Wall clock time and date at job start Mon Mar 30 2020 02:45:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 110.01031 * 2 1 4 4 C 1.54265 * 110.03376 * 121.43995 * 2 1 3 5 5 C 1.54890 * 104.19358 * 142.89562 * 4 2 1 6 6 C 1.54894 * 102.74813 * 322.05537 * 5 4 2 7 7 C 1.53870 * 110.02858 * 238.61040 * 2 1 3 8 8 H 1.09000 * 110.03284 * 121.38310 * 7 2 1 9 9 C 1.52997 * 110.03686 * 359.97438 * 7 2 1 10 10 N 1.46899 * 109.47254 * 174.99996 * 9 7 2 11 11 C 1.46904 * 111.00029 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.46950 * 180.02562 * 11 10 9 13 13 C 1.50698 * 109.47092 * 180.02562 * 12 11 10 14 14 H 1.08009 * 119.99873 * 0.02562 * 13 12 11 15 15 C 1.37879 * 120.00054 * 180.02562 * 13 12 11 16 16 N 1.31519 * 119.99652 * 180.02562 * 15 13 12 17 17 Si 1.86797 * 120.00237 * 359.97438 * 15 13 12 18 18 H 1.48503 * 109.47105 * 89.99867 * 17 15 13 19 19 H 1.48491 * 109.47273 * 210.00139 * 17 15 13 20 20 H 1.48503 * 109.46704 * 330.00145 * 17 15 13 21 21 H 1.08998 * 109.46934 * 181.39307 * 1 2 3 22 22 H 1.09003 * 109.47211 * 301.38893 * 1 2 3 23 23 H 1.08996 * 109.47441 * 61.38846 * 1 2 3 24 24 H 1.09000 * 110.48786 * 261.57354 * 4 2 1 25 25 H 1.09005 * 110.48342 * 24.21783 * 4 2 1 26 26 H 1.08998 * 110.75426 * 80.37434 * 5 4 2 27 27 H 1.09006 * 110.75333 * 203.74371 * 5 4 2 28 28 H 1.08994 * 110.48714 * 279.26294 * 6 5 4 29 29 H 1.08998 * 110.48108 * 156.61627 * 6 5 4 30 30 H 1.09002 * 109.47153 * 54.99992 * 9 7 2 31 31 H 1.09001 * 109.46832 * 295.00183 * 9 7 2 32 32 H 1.00902 * 111.00582 * 303.95797 * 10 9 7 33 33 H 1.08995 * 109.47167 * 300.00240 * 11 10 9 34 34 H 1.09003 * 109.46442 * 60.00214 * 11 10 9 35 35 H 1.09005 * 109.47424 * 300.00229 * 12 11 10 36 36 H 1.09004 * 109.47266 * 59.99979 * 12 11 10 37 37 H 0.96998 * 119.99638 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9031 1.0242 0.0000 4 6 2.0585 -0.7560 1.2365 5 6 3.3138 -1.5010 0.7184 6 6 2.8875 -1.9403 -0.7044 7 6 2.0570 -0.7530 -1.2341 8 1 2.6860 -0.0943 -1.8330 9 6 0.8861 -1.2664 -2.0744 10 7 1.3994 -1.8776 -3.3077 11 6 0.3007 -2.3836 -4.1413 12 6 0.8733 -3.0118 -5.4134 13 6 -0.2538 -3.5304 -6.2688 14 1 -1.2764 -3.4222 -5.9383 15 6 0.0203 -4.1429 -7.4732 16 7 -0.9635 -4.5950 -8.2199 17 14 1.7888 -4.3293 -8.0451 18 1 2.3363 -5.6174 -7.5488 19 1 1.8336 -4.3115 -9.5293 20 1 2.6023 -3.2073 -7.5118 21 1 -0.3633 -1.0274 0.0250 22 1 -0.3634 0.5353 0.8773 23 1 -0.3634 0.4921 -0.9021 24 1 2.3298 -0.0544 2.0254 25 1 1.3143 -1.4667 1.5960 26 1 4.1710 -0.8292 0.6747 27 1 3.5326 -2.3684 1.3412 28 1 2.2772 -2.8423 -0.6584 29 1 3.7637 -2.1030 -1.3319 30 1 0.2283 -0.4350 -2.3274 31 1 0.3289 -2.0103 -1.5049 32 1 1.9737 -1.2266 -3.8221 33 1 -0.2602 -3.1353 -3.5859 34 1 -0.3615 -1.5600 -4.4086 35 1 1.4345 -2.2604 -5.9689 36 1 1.5353 -3.8354 -5.1456 37 1 -0.7706 -5.0255 -9.0675 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000230676335.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:31 Heat of formation + Delta-G solvation = -50.258301 kcal Electronic energy + Delta-G solvation = -14067.957460 eV Core-core repulsion = 11842.891082 eV Total energy + Delta-G solvation = -2225.066378 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.03405 -37.11877 -34.92638 -32.60761 -32.01965 -29.74393 -26.38629 -25.72110 -24.04379 -22.29941 -21.54210 -19.48066 -18.97518 -17.07951 -16.73979 -16.30983 -15.71405 -15.29349 -14.97027 -14.62378 -14.54241 -14.42485 -13.46011 -13.35680 -13.09845 -12.93457 -12.70550 -12.20696 -11.93877 -11.79231 -11.68781 -11.59279 -11.51809 -11.43104 -11.39393 -11.24728 -11.05543 -10.77775 -9.25528 -8.30999 -6.35828 1.37150 1.38292 1.51208 2.36270 3.04606 3.29666 3.73751 3.77055 3.90167 4.29517 4.42556 4.45446 4.53302 4.55141 4.62015 4.67015 4.74862 4.78981 4.93437 4.94492 4.97634 5.04386 5.12867 5.18737 5.26594 5.33435 5.38145 5.46402 5.48510 5.58011 5.61176 5.63210 6.16739 6.25264 6.55996 6.73148 7.29251 8.85854 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.054659 B = 0.005524 C = 0.005175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.146533 B = 5067.577873 C = 5409.520716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.089 4.089 3 H 0.078 0.922 4 C -0.117 4.117 5 C -0.124 4.124 6 C -0.108 4.108 7 C -0.083 4.083 8 H 0.070 0.930 9 C 0.066 3.934 10 N -0.694 5.694 11 C 0.088 3.912 12 C -0.003 4.003 13 C -0.536 4.536 14 H 0.030 0.970 15 C 0.005 3.995 16 N -0.951 5.951 17 Si 0.956 3.044 18 H -0.267 1.267 19 H -0.282 1.282 20 H -0.247 1.247 21 H 0.050 0.950 22 H 0.062 0.938 23 H 0.051 0.949 24 H 0.075 0.925 25 H 0.063 0.937 26 H 0.071 0.929 27 H 0.068 0.932 28 H 0.052 0.948 29 H 0.058 0.942 30 H 0.030 0.970 31 H 0.063 0.937 32 H 0.340 0.660 33 H 0.052 0.948 34 H 0.014 0.986 35 H 0.020 0.980 36 H 0.021 0.979 37 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.191 9.846 18.331 22.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.108 4.108 3 H 0.097 0.903 4 C -0.154 4.154 5 C -0.162 4.162 6 C -0.145 4.145 7 C -0.102 4.102 8 H 0.088 0.912 9 C -0.062 4.062 10 N -0.325 5.325 11 C -0.042 4.042 12 C -0.041 4.041 13 C -0.574 4.574 14 H 0.049 0.951 15 C -0.191 4.191 16 N -0.592 5.592 17 Si 0.779 3.221 18 H -0.192 1.192 19 H -0.208 1.208 20 H -0.170 1.170 21 H 0.069 0.931 22 H 0.081 0.919 23 H 0.070 0.930 24 H 0.094 0.906 25 H 0.081 0.919 26 H 0.090 0.910 27 H 0.087 0.913 28 H 0.071 0.929 29 H 0.077 0.923 30 H 0.048 0.952 31 H 0.081 0.919 32 H 0.158 0.842 33 H 0.070 0.930 34 H 0.032 0.968 35 H 0.038 0.962 36 H 0.039 0.961 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 9.254 9.158 18.477 22.603 hybrid contribution -0.346 0.376 -1.150 1.258 sum 8.908 9.533 17.327 21.691 Atomic orbital electron populations 1.21972 0.95309 1.01641 1.01672 1.21754 0.95641 0.99366 0.94033 0.90318 1.22441 0.97164 0.98951 0.96882 1.22519 0.97883 1.00068 0.95685 1.22259 0.98966 0.97181 0.96132 1.21789 0.95640 0.96916 0.95874 0.91150 1.22256 0.96564 0.96749 0.90667 1.60494 1.22004 1.42382 1.07619 1.21600 0.92081 0.97116 0.93363 1.19430 0.95485 0.96056 0.93152 1.21425 0.93653 1.37989 1.04377 0.95135 1.26016 1.02340 0.94327 0.96456 1.70070 1.34301 1.41127 1.13686 0.85573 0.79421 0.79932 0.77168 1.19249 1.20815 1.17043 0.93084 0.91854 0.93023 0.90590 0.91856 0.91001 0.91309 0.92897 0.92320 0.95215 0.91855 0.84241 0.92966 0.96796 0.96204 0.96070 0.92391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.74 7.88 71.98 0.57 -2.17 16 2 C -0.09 -1.60 3.50 -10.07 -0.04 -1.63 16 3 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 4 C -0.12 -1.88 6.36 31.67 0.20 -1.68 16 5 C -0.12 -2.13 6.91 31.89 0.22 -1.91 16 6 C -0.11 -2.39 6.19 31.67 0.20 -2.20 16 7 C -0.08 -1.83 3.09 -10.07 -0.03 -1.86 16 8 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 9 C 0.07 1.81 3.79 86.30 0.33 2.14 16 10 N -0.69 -23.07 6.32 -513.89 -3.25 -26.32 16 11 C 0.09 3.62 5.62 86.30 0.49 4.11 16 12 C 0.00 -0.17 4.30 29.85 0.13 -0.04 16 13 C -0.54 -31.89 9.66 25.60 0.25 -31.65 16 14 H 0.03 1.99 7.99 -2.91 -0.02 1.97 16 15 C 0.01 0.33 5.47 84.65 0.46 0.79 16 16 N -0.95 -60.74 13.96 21.45 0.30 -60.44 16 17 Si 0.96 45.33 27.47 68.60 1.88 47.21 16 18 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 19 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 20 H -0.25 -10.89 6.54 99.48 0.65 -10.24 16 21 H 0.05 1.02 6.85 -2.39 -0.02 1.01 16 22 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 23 H 0.05 1.01 6.62 -2.39 -0.02 1.00 16 24 H 0.08 1.00 8.14 -2.39 -0.02 0.99 16 25 H 0.06 1.06 7.84 -2.38 -0.02 1.04 16 26 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 27 H 0.07 1.10 8.14 -2.38 -0.02 1.08 16 28 H 0.05 1.34 7.76 -2.39 -0.02 1.33 16 29 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.03 0.81 6.42 -2.39 -0.02 0.79 16 31 H 0.06 1.82 6.91 -2.39 -0.02 1.80 16 32 H 0.34 10.54 8.73 -89.69 -0.78 9.76 16 33 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 34 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 35 H 0.02 0.93 7.20 -2.38 -0.02 0.91 16 36 H 0.02 1.02 7.57 -2.39 -0.02 1.00 16 37 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 Total: -1.00 -64.93 286.75 1.88 -63.05 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: 0.18 Total: 12.61 kcal Atomic # 6 Polarization: -38.88 SS G_CDS: 2.77 Total: -36.11 kcal Atomic # 7 Polarization: -83.81 SS G_CDS: -2.95 Total: -86.76 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 1.88 Total: 47.21 kcal Total: -64.93 1.88 -63.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230676335.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.788 kcal (2) G-P(sol) polarization free energy of solvation -64.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds