Wall clock time and date at job start Mon Mar 30 2020 03:01:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.46889 * 2 1 4 4 C 1.50705 * 109.46959 * 239.99802 * 2 1 3 5 5 H 1.07997 * 120.00061 * 239.99791 * 4 2 1 6 6 C 1.37879 * 119.99691 * 60.00209 * 4 2 1 7 7 N 1.31511 * 120.00186 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99930 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47067 * 59.99700 * 8 6 4 10 10 H 1.48498 * 109.47161 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.46904 * 300.00315 * 8 6 4 12 12 N 1.46900 * 109.47001 * 120.00019 * 2 1 3 13 13 C 1.46853 * 110.99979 * 60.30658 * 12 2 1 14 14 C 1.53039 * 109.52135 * 174.15932 * 13 12 2 15 15 H 1.09002 * 109.50266 * 299.23565 * 14 13 12 16 16 C 1.52993 * 109.50174 * 179.12002 * 14 13 12 17 17 C 1.53116 * 109.27782 * 59.17845 * 14 13 12 18 18 C 1.53121 * 109.16297 * 302.34271 * 17 14 13 19 19 C 1.46840 * 111.00079 * 296.09400 * 12 2 1 20 20 H 1.09007 * 109.46472 * 65.82564 * 19 12 2 21 21 C 1.53004 * 109.46414 * 305.85661 * 19 12 2 22 22 H 1.09000 * 109.46866 * 174.92496 * 1 2 3 23 23 H 1.09000 * 109.46839 * 54.93245 * 1 2 3 24 24 H 1.08997 * 109.47045 * 294.92670 * 1 2 3 25 25 H 0.97001 * 120.00038 * 179.97438 * 7 6 4 26 26 H 1.08995 * 109.45768 * 294.17660 * 13 12 2 27 27 H 1.08992 * 109.46335 * 54.15414 * 13 12 2 28 28 H 1.09000 * 109.47200 * 59.99705 * 16 14 13 29 29 H 1.09001 * 109.47158 * 180.02562 * 16 14 13 30 30 H 1.09000 * 109.47192 * 299.99939 * 16 14 13 31 31 H 1.09001 * 109.52336 * 62.24987 * 17 14 13 32 32 H 1.09000 * 109.52555 * 182.43864 * 17 14 13 33 33 H 1.08999 * 109.50723 * 177.59395 * 18 17 14 34 34 H 1.08996 * 109.50678 * 297.67598 * 18 17 14 35 35 H 1.08999 * 109.46807 * 66.71317 * 21 19 12 36 36 H 1.09001 * 109.47114 * 186.71189 * 21 19 12 37 37 H 1.08997 * 109.47083 * 306.71413 * 21 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3224 -1.1196 -4.0080 9 1 1.8280 -2.5199 -4.0082 10 1 1.8278 -0.4192 -5.2205 11 1 3.8074 -1.1191 -4.0077 12 7 2.0197 -0.6925 1.1994 13 6 1.5548 -2.0852 1.2297 14 6 2.1998 -2.8141 2.4107 15 1 3.2836 -2.8079 2.2942 16 6 1.6983 -4.2588 2.4548 17 6 1.8214 -2.1016 3.7121 18 6 2.2737 -0.6408 3.6353 19 6 1.6266 0.0251 2.4187 20 1 0.5419 -0.0034 2.5233 21 6 2.0916 1.4799 2.3264 22 1 -0.3633 -1.0237 -0.0909 23 1 -0.3633 0.5904 -0.8411 24 1 -0.3633 0.4331 0.9319 25 1 0.7096 1.1618 -3.4844 26 1 0.4706 -2.1037 1.3397 27 1 1.8341 -2.5815 0.3004 28 1 1.9648 -4.7644 1.5266 29 1 2.1576 -4.7774 3.2963 30 1 0.6147 -4.2639 2.5730 31 1 0.7407 -2.1417 3.8484 32 1 2.3137 -2.5916 4.5521 33 1 1.9692 -0.1173 4.5416 34 1 3.3586 -0.6003 3.5388 35 1 1.5410 1.9877 1.5345 36 1 1.9069 1.9813 3.2765 37 1 3.1579 1.5069 2.1025 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251699660.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:51 Heat of formation + Delta-G solvation = -16.430859 kcal Electronic energy + Delta-G solvation = -15210.306447 eV Core-core repulsion = 12986.706937 eV Total energy + Delta-G solvation = -2223.599510 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.90582 -34.75116 -33.02556 -31.56792 -28.37394 -28.11503 -25.16651 -24.34550 -23.26387 -20.98277 -19.68048 -18.34682 -16.15440 -15.27365 -14.58095 -14.14611 -13.96658 -13.64361 -13.49095 -12.56100 -12.43125 -12.27108 -11.91933 -11.42596 -11.27184 -11.12680 -11.07534 -10.93372 -10.74046 -10.66313 -10.33971 -10.13307 -10.03616 -10.00041 -9.69589 -9.21677 -8.74534 -8.31330 -7.00400 -5.96482 -3.99113 3.34881 3.39016 3.42103 4.44927 4.94302 5.21605 5.34079 5.34814 5.37531 5.56167 5.84095 5.90606 5.95798 6.04805 6.16325 6.21134 6.24159 6.29578 6.32915 6.45669 6.53050 6.64082 6.73533 6.77032 6.81968 6.94223 6.96789 6.98521 7.23356 7.63039 7.78738 7.90213 8.23524 8.48360 8.71839 9.07054 9.65408 11.11005 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.032765 B = 0.010639 C = 0.008805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.361358 B = 2631.254317 C = 3179.216263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.208 3.792 3 H 0.046 0.954 4 C -0.500 4.500 5 H 0.061 0.939 6 C 0.058 3.942 7 N -0.895 5.895 8 Si 0.894 3.106 9 H -0.279 1.279 10 H -0.289 1.289 11 H -0.277 1.277 12 N -0.527 5.527 13 C 0.070 3.930 14 C -0.094 4.094 15 H 0.072 0.928 16 C -0.143 4.143 17 C -0.112 4.112 18 C -0.110 4.110 19 C 0.079 3.921 20 H 0.030 0.970 21 C -0.142 4.142 22 H 0.028 0.972 23 H 0.083 0.917 24 H 0.007 0.993 25 H 0.260 0.740 26 H 0.020 0.980 27 H 0.082 0.918 28 H 0.054 0.946 29 H 0.048 0.952 30 H 0.049 0.951 31 H 0.052 0.948 32 H 0.052 0.948 33 H 0.053 0.947 34 H 0.065 0.935 35 H 0.060 0.940 36 H 0.043 0.957 37 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.679 -4.112 9.882 10.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.102 3.898 3 H 0.064 0.936 4 C -0.539 4.539 5 H 0.079 0.921 6 C -0.143 4.143 7 N -0.535 5.535 8 Si 0.723 3.277 9 H -0.204 1.204 10 H -0.215 1.215 11 H -0.203 1.203 12 N -0.252 5.252 13 C -0.058 4.058 14 C -0.113 4.113 15 H 0.091 0.909 16 C -0.201 4.201 17 C -0.149 4.149 18 C -0.148 4.148 19 C -0.030 4.030 20 H 0.048 0.952 21 C -0.200 4.200 22 H 0.047 0.953 23 H 0.102 0.898 24 H 0.026 0.974 25 H 0.069 0.931 26 H 0.039 0.961 27 H 0.100 0.900 28 H 0.073 0.927 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.084 0.916 35 H 0.079 0.921 36 H 0.063 0.937 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.115 -3.984 9.710 10.555 hybrid contribution -0.708 -0.415 -0.885 1.207 sum 0.407 -4.399 8.826 9.870 Atomic orbital electron populations 1.22378 1.01156 0.99899 0.99403 1.19336 0.89502 0.95019 0.85908 0.93601 1.21121 1.30506 1.12391 0.89837 0.92085 1.24916 0.95286 0.95142 0.98908 1.69888 1.37155 1.23044 1.23366 0.86621 0.79225 0.79614 0.82281 1.20432 1.21455 1.20273 1.62267 1.59722 1.01216 1.01953 1.21957 0.95913 0.90324 0.97609 1.21241 1.00931 0.93841 0.95243 0.90927 1.21774 1.00720 0.96461 1.01138 1.21604 1.00241 0.95899 0.97177 1.21621 1.01110 0.95095 0.96935 1.21498 0.96480 0.93745 0.91321 0.95215 1.21843 1.02211 0.95458 1.00448 0.95301 0.89847 0.97365 0.93060 0.96135 0.90010 0.92697 0.93332 0.93203 0.92882 0.92886 0.92809 0.91597 0.92100 0.93749 0.92142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.17 8.18 37.16 0.30 -3.87 16 2 C 0.21 5.26 1.94 -68.86 -0.13 5.12 16 3 H 0.05 1.26 6.13 -51.93 -0.32 0.94 16 4 C -0.50 -13.75 7.86 -34.44 -0.27 -14.02 16 5 H 0.06 1.68 6.68 -52.49 -0.35 1.33 16 6 C 0.06 1.62 5.30 -17.82 -0.09 1.52 16 7 N -0.90 -25.65 11.38 55.43 0.63 -25.02 16 8 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 9 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 10 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 12 N -0.53 -11.44 4.48 -220.13 -0.99 -12.43 16 13 C 0.07 1.41 3.97 -3.83 -0.02 1.39 16 14 C -0.09 -1.52 2.88 -90.54 -0.26 -1.78 16 15 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 16 C -0.14 -1.97 9.20 37.15 0.34 -1.63 16 17 C -0.11 -1.64 5.29 -26.61 -0.14 -1.79 16 18 C -0.11 -1.71 5.37 -26.65 -0.14 -1.85 16 19 C 0.08 1.47 1.98 -67.72 -0.13 1.33 16 20 H 0.03 0.59 6.59 -51.92 -0.34 0.25 16 21 C -0.14 -2.53 8.53 37.16 0.32 -2.22 16 22 H 0.03 0.70 6.83 -51.93 -0.35 0.34 16 23 H 0.08 2.25 6.22 -51.93 -0.32 1.93 16 24 H 0.01 0.17 6.38 -51.93 -0.33 -0.16 16 25 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 26 H 0.02 0.43 6.75 -51.93 -0.35 0.07 16 27 H 0.08 1.80 6.27 -51.93 -0.33 1.47 16 28 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 35 H 0.06 1.19 6.65 -51.93 -0.35 0.85 16 36 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 LS Contribution 275.45 15.07 4.15 4.15 Total: -1.00 -27.85 275.45 -7.86 -35.71 By element: Atomic # 1 Polarization: 5.26 SS G_CDS: -6.40 Total: -1.15 kcal Atomic # 6 Polarization: -17.54 SS G_CDS: -0.23 Total: -17.77 kcal Atomic # 7 Polarization: -37.09 SS G_CDS: -0.36 Total: -37.45 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -27.85 -7.86 -35.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251699660.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.277 kcal (2) G-P(sol) polarization free energy of solvation -27.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds