Wall clock time and date at job start Mon Mar 30 2020 02:57:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08998 * 110.43762 * 2 1 4 4 C 1.54892 * 110.59607 * 237.38168 * 2 1 3 5 5 C 1.54892 * 102.74865 * 203.32258 * 4 2 1 6 6 C 1.54273 * 104.19338 * 37.94236 * 5 4 2 7 7 H 1.09004 * 110.07209 * 95.70114 * 6 5 4 8 8 N 1.46901 * 110.03125 * 217.10670 * 6 5 4 9 9 C 1.46905 * 110.99870 * 272.16709 * 8 6 5 10 10 C 1.52993 * 109.47039 * 180.02562 * 9 8 6 11 11 C 1.50698 * 109.47393 * 180.02562 * 10 9 8 12 12 H 1.08010 * 119.99765 * 359.97438 * 11 10 9 13 13 C 1.37872 * 120.00736 * 179.97438 * 11 10 9 14 14 N 1.31509 * 120.00590 * 179.97438 * 13 11 10 15 15 Si 1.86807 * 119.99710 * 0.02562 * 13 11 10 16 16 H 1.48499 * 109.47209 * 89.99893 * 15 13 11 17 17 H 1.48500 * 109.47295 * 209.99804 * 15 13 11 18 18 H 1.48503 * 109.47210 * 329.99849 * 15 13 11 19 19 C 1.53876 * 106.59734 * 336.38981 * 6 5 4 20 20 H 1.09004 * 110.02839 * 119.28530 * 19 6 5 21 21 C 1.52997 * 110.02867 * 240.66078 * 19 6 5 22 22 H 1.09006 * 109.47091 * 297.45593 * 1 2 3 23 23 H 1.09001 * 109.47309 * 57.45853 * 1 2 3 24 24 H 1.09002 * 109.47634 * 177.46091 * 1 2 3 25 25 H 1.08992 * 110.75714 * 321.63900 * 4 2 1 26 26 H 1.08995 * 110.75492 * 85.01375 * 4 2 1 27 27 H 1.09004 * 110.48689 * 279.26975 * 5 4 2 28 28 H 1.08991 * 110.48834 * 156.61993 * 5 4 2 29 29 H 1.00901 * 111.00067 * 36.11884 * 8 6 5 30 30 H 1.09001 * 109.46798 * 300.00327 * 9 8 6 31 31 H 1.08998 * 109.46961 * 60.00043 * 9 8 6 32 32 H 1.09001 * 109.47393 * 299.99719 * 10 9 8 33 33 H 1.08998 * 109.47408 * 60.00073 * 10 9 8 34 34 H 0.97002 * 120.00416 * 179.97438 * 14 13 11 35 35 H 1.09006 * 109.46985 * 60.00846 * 21 19 6 36 36 H 1.09005 * 109.46773 * 179.97438 * 21 19 6 37 37 H 1.08993 * 109.47638 * 300.00279 * 21 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9105 1.0214 0.0000 4 6 2.0748 -0.7816 -1.2212 5 6 3.4937 -1.1948 -0.7573 6 6 3.3184 -1.5370 0.7368 7 1 3.1733 -2.6102 0.8602 8 7 4.4977 -1.0985 1.4951 9 6 5.5304 -2.1432 1.5129 10 6 6.7398 -1.6513 2.3105 11 6 7.7995 -2.7226 2.3282 12 1 7.6273 -3.6608 1.8215 13 6 8.9887 -2.5052 2.9911 14 7 9.9132 -3.4404 3.0069 15 14 9.2861 -0.8828 3.8680 16 1 8.8095 -0.9837 5.2708 17 1 10.7388 -0.5747 3.8597 18 1 8.5465 0.1997 3.1705 19 6 2.0698 -0.7773 1.2182 20 1 1.3184 -1.4820 1.5745 21 6 2.4474 0.1957 2.3369 22 1 -0.3633 0.4738 0.9120 23 1 -0.3634 0.5528 -0.8663 24 1 -0.3634 -1.0266 -0.0455 25 1 1.4626 -1.6608 -1.4216 26 1 2.1278 -0.1380 -2.0993 27 1 4.1914 -0.3662 -0.8795 28 1 3.8368 -2.0686 -1.3111 29 1 4.8642 -0.2340 1.1258 30 1 5.1292 -3.0428 1.9797 31 1 5.8360 -2.3693 0.4913 32 1 7.1411 -0.7515 1.8440 33 1 6.4339 -1.4254 3.3320 34 1 10.7500 -3.2873 3.4730 35 1 3.1805 0.9112 1.9640 36 1 1.5571 0.7289 2.6705 37 1 2.8736 -0.3591 3.1726 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000252089860.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:32 Heat of formation + Delta-G solvation = -28.970769 kcal Electronic energy + Delta-G solvation = -14293.369111 eV Core-core repulsion = 12069.225829 eV Total energy + Delta-G solvation = -2224.143281 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.18852 -35.13720 -32.78064 -31.09917 -30.82041 -28.58331 -25.25105 -23.83366 -23.38583 -20.58985 -20.33056 -18.86155 -16.75255 -15.54410 -15.40814 -14.34369 -14.09470 -13.86092 -13.64787 -13.40185 -12.85799 -12.49168 -12.45653 -12.31145 -11.71578 -11.52683 -11.31860 -10.98364 -10.81325 -10.70982 -10.57521 -10.38526 -10.15631 -10.10560 -9.76763 -9.58640 -9.19705 -8.51445 -7.79276 -6.02243 -4.00333 3.34484 3.41114 3.46097 4.48254 4.51559 4.65570 4.72385 4.95254 5.28408 5.32521 5.41072 5.43911 5.53344 5.59784 5.66508 5.74612 5.80914 5.85419 5.97334 6.04440 6.11454 6.17074 6.26007 6.31541 6.38330 6.43126 6.54816 6.73004 6.82830 7.20767 7.43415 7.68465 7.81828 7.97596 8.56020 9.02095 9.60436 11.11217 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.056231 B = 0.006083 C = 0.005751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 497.823867 B = 4601.664448 C = 4867.721500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.096 4.096 3 H 0.072 0.928 4 C -0.117 4.117 5 C -0.153 4.153 6 C 0.085 3.915 7 H 0.075 0.925 8 N -0.684 5.684 9 C 0.072 3.928 10 C -0.010 4.010 11 C -0.520 4.520 12 H 0.070 0.930 13 C 0.067 3.933 14 N -0.905 5.905 15 Si 0.883 3.117 16 H -0.277 1.277 17 H -0.289 1.289 18 H -0.265 1.265 19 C -0.083 4.083 20 H 0.067 0.933 21 C -0.122 4.122 22 H 0.053 0.947 23 H 0.050 0.950 24 H 0.053 0.947 25 H 0.065 0.935 26 H 0.060 0.940 27 H 0.065 0.935 28 H 0.062 0.938 29 H 0.335 0.665 30 H 0.062 0.938 31 H 0.020 0.980 32 H 0.012 0.988 33 H 0.020 0.980 34 H 0.263 0.737 35 H 0.051 0.949 36 H 0.034 0.966 37 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.032 7.589 -6.091 19.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.114 4.114 3 H 0.091 0.909 4 C -0.155 4.155 5 C -0.192 4.192 6 C -0.026 4.026 7 H 0.093 0.907 8 N -0.313 5.313 9 C -0.056 4.056 10 C -0.048 4.048 11 C -0.559 4.559 12 H 0.088 0.912 13 C -0.134 4.134 14 N -0.544 5.544 15 Si 0.710 3.290 16 H -0.203 1.203 17 H -0.215 1.215 18 H -0.190 1.190 19 C -0.102 4.102 20 H 0.086 0.914 21 C -0.179 4.179 22 H 0.072 0.928 23 H 0.069 0.931 24 H 0.072 0.928 25 H 0.083 0.917 26 H 0.079 0.921 27 H 0.084 0.916 28 H 0.081 0.919 29 H 0.153 0.847 30 H 0.080 0.920 31 H 0.039 0.961 32 H 0.030 0.970 33 H 0.038 0.962 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.053 0.947 37 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -17.096 7.351 -5.393 19.375 hybrid contribution 0.706 0.739 -0.493 1.135 sum -16.390 8.090 -5.886 19.202 Atomic orbital electron populations 1.21789 0.95397 1.01511 1.01235 1.22084 0.95065 0.99324 0.94974 0.90937 1.22490 0.96211 0.99572 0.97254 1.23121 0.97059 1.01119 0.97915 1.22214 0.91534 0.98972 0.89857 0.90684 1.60810 1.07669 1.06741 1.56114 1.21970 0.91618 0.93643 0.98338 1.19538 0.92733 0.96840 0.95639 1.21090 0.99140 1.01786 1.33869 0.91184 1.25007 0.95897 0.96625 0.95906 1.69916 1.07144 1.33623 1.43735 0.86731 0.77010 0.84779 0.80457 1.20252 1.21543 1.19011 1.21834 0.96111 0.97152 0.95107 0.91444 1.21522 0.99257 0.98481 0.98660 0.92799 0.93114 0.92808 0.91653 0.92106 0.91610 0.91871 0.84715 0.91957 0.96141 0.96985 0.96166 0.92761 0.92981 0.94676 0.91414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.27 9.12 37.15 0.34 -0.93 16 2 C -0.10 -1.01 2.98 -88.97 -0.27 -1.27 16 3 H 0.07 0.78 7.84 -51.93 -0.41 0.37 16 4 C -0.12 -1.24 6.33 -24.74 -0.16 -1.39 16 5 C -0.15 -1.93 6.46 -25.07 -0.16 -2.09 16 6 C 0.09 1.20 3.21 -66.59 -0.21 0.98 16 7 H 0.07 1.11 7.81 -51.93 -0.41 0.71 16 8 N -0.68 -11.44 4.44 -105.54 -0.47 -11.91 16 9 C 0.07 1.48 5.45 -3.82 -0.02 1.46 16 10 C -0.01 -0.24 4.30 -27.89 -0.12 -0.36 16 11 C -0.52 -15.12 9.66 -34.44 -0.33 -15.45 16 12 H 0.07 2.18 7.99 -52.48 -0.42 1.76 16 13 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 14 N -0.91 -28.32 13.96 55.43 0.77 -27.54 16 15 Si 0.88 22.18 27.47 -169.99 -4.67 17.51 16 16 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 17 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 18 H -0.27 -6.43 6.54 56.52 0.37 -6.06 16 19 C -0.08 -1.01 3.07 -89.51 -0.27 -1.28 16 20 H 0.07 0.81 7.84 -51.93 -0.41 0.40 16 21 C -0.12 -1.55 8.06 37.16 0.30 -1.25 16 22 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 23 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 24 H 0.05 0.47 8.12 -51.93 -0.42 0.05 16 25 H 0.06 0.66 8.05 -51.93 -0.42 0.24 16 26 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.07 0.85 7.56 -51.93 -0.39 0.46 16 28 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.33 5.42 7.67 -39.29 -0.30 5.12 16 30 H 0.06 1.31 8.07 -51.93 -0.42 0.89 16 31 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.01 0.29 7.20 -51.93 -0.37 -0.08 16 33 H 0.02 0.50 7.57 -51.93 -0.39 0.11 16 34 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 35 H 0.05 0.68 7.49 -51.93 -0.39 0.29 16 36 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.07 0.98 7.81 -51.93 -0.41 0.58 16 LS Contribution 288.91 15.07 4.35 4.35 Total: -1.00 -29.92 288.91 -7.87 -37.79 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: -6.86 Total: -0.49 kcal Atomic # 6 Polarization: -18.70 SS G_CDS: -1.01 Total: -19.71 kcal Atomic # 7 Polarization: -39.76 SS G_CDS: 0.31 Total: -39.46 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -4.67 Total: 17.51 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -29.92 -7.87 -37.79 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252089860.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.824 kcal (2) G-P(sol) polarization free energy of solvation -29.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds