Wall clock time and date at job start Mon Mar 30 2020 02:57:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08998 * 110.43762 * 2 1 4 4 C 1.54892 * 110.59607 * 237.38168 * 2 1 3 5 5 C 1.54892 * 102.74865 * 203.32258 * 4 2 1 6 6 C 1.54273 * 104.19338 * 37.94236 * 5 4 2 7 7 H 1.09004 * 110.07209 * 95.70114 * 6 5 4 8 8 N 1.46901 * 110.03125 * 217.10670 * 6 5 4 9 9 C 1.46905 * 110.99870 * 272.16709 * 8 6 5 10 10 C 1.52993 * 109.47039 * 180.02562 * 9 8 6 11 11 C 1.50698 * 109.47393 * 180.02562 * 10 9 8 12 12 H 1.08010 * 119.99765 * 359.97438 * 11 10 9 13 13 C 1.37872 * 120.00736 * 179.97438 * 11 10 9 14 14 N 1.31509 * 120.00590 * 179.97438 * 13 11 10 15 15 Si 1.86807 * 119.99710 * 0.02562 * 13 11 10 16 16 H 1.48499 * 109.47209 * 89.99893 * 15 13 11 17 17 H 1.48500 * 109.47295 * 209.99804 * 15 13 11 18 18 H 1.48503 * 109.47210 * 329.99849 * 15 13 11 19 19 C 1.53876 * 106.59734 * 336.38981 * 6 5 4 20 20 H 1.09004 * 110.02839 * 119.28530 * 19 6 5 21 21 C 1.52997 * 110.02867 * 240.66078 * 19 6 5 22 22 H 1.09006 * 109.47091 * 297.45593 * 1 2 3 23 23 H 1.09001 * 109.47309 * 57.45853 * 1 2 3 24 24 H 1.09002 * 109.47634 * 177.46091 * 1 2 3 25 25 H 1.08992 * 110.75714 * 321.63900 * 4 2 1 26 26 H 1.08995 * 110.75492 * 85.01375 * 4 2 1 27 27 H 1.09004 * 110.48689 * 279.26975 * 5 4 2 28 28 H 1.08991 * 110.48834 * 156.61993 * 5 4 2 29 29 H 1.00901 * 111.00067 * 36.11884 * 8 6 5 30 30 H 1.09001 * 109.46798 * 300.00327 * 9 8 6 31 31 H 1.08998 * 109.46961 * 60.00043 * 9 8 6 32 32 H 1.09001 * 109.47393 * 299.99719 * 10 9 8 33 33 H 1.08998 * 109.47408 * 60.00073 * 10 9 8 34 34 H 0.97002 * 120.00416 * 179.97438 * 14 13 11 35 35 H 1.09006 * 109.46985 * 60.00846 * 21 19 6 36 36 H 1.09005 * 109.46773 * 179.97438 * 21 19 6 37 37 H 1.08993 * 109.47638 * 300.00279 * 21 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9105 1.0214 0.0000 4 6 2.0748 -0.7816 -1.2212 5 6 3.4937 -1.1948 -0.7573 6 6 3.3184 -1.5370 0.7368 7 1 3.1733 -2.6102 0.8602 8 7 4.4977 -1.0985 1.4951 9 6 5.5304 -2.1432 1.5129 10 6 6.7398 -1.6513 2.3105 11 6 7.7995 -2.7226 2.3282 12 1 7.6273 -3.6608 1.8215 13 6 8.9887 -2.5052 2.9911 14 7 9.9132 -3.4404 3.0069 15 14 9.2861 -0.8828 3.8680 16 1 8.8095 -0.9837 5.2708 17 1 10.7388 -0.5747 3.8597 18 1 8.5465 0.1997 3.1705 19 6 2.0698 -0.7773 1.2182 20 1 1.3184 -1.4820 1.5745 21 6 2.4474 0.1957 2.3369 22 1 -0.3633 0.4738 0.9120 23 1 -0.3634 0.5528 -0.8663 24 1 -0.3634 -1.0266 -0.0455 25 1 1.4626 -1.6608 -1.4216 26 1 2.1278 -0.1380 -2.0993 27 1 4.1914 -0.3662 -0.8795 28 1 3.8368 -2.0686 -1.3111 29 1 4.8642 -0.2340 1.1258 30 1 5.1292 -3.0428 1.9797 31 1 5.8360 -2.3693 0.4913 32 1 7.1411 -0.7515 1.8440 33 1 6.4339 -1.4254 3.3320 34 1 10.7500 -3.2873 3.4730 35 1 3.1805 0.9112 1.9640 36 1 1.5571 0.7289 2.6705 37 1 2.8736 -0.3591 3.1726 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000252089860.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:31 Heat of formation + Delta-G solvation = -46.755395 kcal Electronic energy + Delta-G solvation = -14294.140310 eV Core-core repulsion = 12069.225829 eV Total energy + Delta-G solvation = -2224.914481 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.23646 -36.65165 -34.77441 -32.36779 -32.06825 -30.00465 -26.61454 -25.18151 -24.56628 -22.31342 -21.44404 -19.93085 -18.92924 -16.79718 -16.53540 -16.27471 -15.53824 -14.94812 -14.87964 -14.71195 -14.45406 -13.95083 -13.53904 -13.31742 -13.26121 -12.88626 -12.72386 -12.44777 -12.13939 -11.84211 -11.67517 -11.65396 -11.59531 -11.41748 -11.29344 -11.28545 -10.99922 -10.77830 -9.18263 -8.30762 -6.35471 1.37001 1.38085 1.50938 2.36201 3.04935 3.32569 3.67942 3.75172 3.98272 4.32523 4.39917 4.49381 4.50506 4.57942 4.66200 4.74241 4.77563 4.82474 4.89227 4.96619 5.01118 5.05595 5.15618 5.27174 5.30935 5.34978 5.40990 5.45288 5.51339 5.60547 5.62603 5.72719 6.21624 6.28623 6.57931 6.73875 7.29625 8.86118 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.056231 B = 0.006083 C = 0.005751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 497.823867 B = 4601.664448 C = 4867.721500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.090 4.090 3 H 0.073 0.927 4 C -0.111 4.111 5 C -0.152 4.152 6 C 0.080 3.920 7 H 0.063 0.937 8 N -0.679 5.679 9 C 0.088 3.912 10 C -0.003 4.003 11 C -0.535 4.535 12 H 0.030 0.970 13 C 0.006 3.994 14 N -0.952 5.952 15 Si 0.956 3.044 16 H -0.267 1.267 17 H -0.283 1.283 18 H -0.247 1.247 19 C -0.079 4.079 20 H 0.071 0.929 21 C -0.118 4.118 22 H 0.056 0.944 23 H 0.062 0.938 24 H 0.055 0.945 25 H 0.071 0.929 26 H 0.074 0.926 27 H 0.063 0.937 28 H 0.055 0.945 29 H 0.340 0.660 30 H 0.050 0.950 31 H 0.013 0.987 32 H 0.019 0.981 33 H 0.021 0.979 34 H 0.267 0.733 35 H 0.048 0.952 36 H 0.051 0.949 37 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.633 9.811 -6.223 21.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.109 4.109 3 H 0.092 0.908 4 C -0.149 4.149 5 C -0.191 4.191 6 C -0.030 4.030 7 H 0.081 0.919 8 N -0.310 5.310 9 C -0.041 4.041 10 C -0.041 4.041 11 C -0.573 4.573 12 H 0.048 0.952 13 C -0.191 4.191 14 N -0.592 5.592 15 Si 0.779 3.221 16 H -0.193 1.193 17 H -0.209 1.209 18 H -0.170 1.170 19 C -0.098 4.098 20 H 0.089 0.911 21 C -0.176 4.176 22 H 0.076 0.924 23 H 0.081 0.919 24 H 0.074 0.926 25 H 0.090 0.910 26 H 0.092 0.908 27 H 0.081 0.919 28 H 0.074 0.926 29 H 0.159 0.841 30 H 0.069 0.931 31 H 0.031 0.969 32 H 0.037 0.963 33 H 0.039 0.961 34 H 0.076 0.924 35 H 0.067 0.933 36 H 0.070 0.930 37 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -18.726 9.577 -5.540 21.750 hybrid contribution 1.189 -0.050 -0.489 1.287 sum -17.537 9.527 -6.030 20.849 Atomic orbital electron populations 1.21764 0.93928 1.01954 1.02004 1.22041 0.96216 0.98917 0.93708 0.90815 1.22474 0.94546 1.00091 0.97744 1.23071 0.98638 1.00765 0.96659 1.22325 0.91160 0.98712 0.90820 0.91862 1.60746 1.07138 1.05812 1.57265 1.21618 0.91303 0.94162 0.97059 1.19420 0.92856 0.95462 0.96322 1.21427 1.00853 1.01664 1.33402 0.95206 1.26008 0.95463 1.00891 0.96762 1.70066 1.07924 1.36213 1.45030 0.85580 0.77329 0.79870 0.79347 1.19262 1.20875 1.17029 1.21817 0.95049 0.97145 0.95835 0.91056 1.21470 0.99825 0.98302 0.97995 0.92446 0.91944 0.92598 0.91005 0.90779 0.91867 0.92572 0.84090 0.93120 0.96879 0.96314 0.96083 0.92415 0.93318 0.92959 0.93541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.05 9.12 71.98 0.66 -1.39 16 2 C -0.09 -1.64 2.98 -9.72 -0.03 -1.67 16 3 H 0.07 1.35 7.84 -2.39 -0.02 1.34 16 4 C -0.11 -2.05 6.33 31.89 0.20 -1.84 16 5 C -0.15 -3.62 6.46 31.67 0.20 -3.42 16 6 C 0.08 2.17 3.21 45.64 0.15 2.32 16 7 H 0.06 1.86 7.81 -2.38 -0.02 1.84 16 8 N -0.68 -22.16 4.44 -487.81 -2.16 -24.32 16 9 C 0.09 3.60 5.45 86.30 0.47 4.07 16 10 C 0.00 -0.14 4.30 29.85 0.13 -0.01 16 11 C -0.53 -31.78 9.66 25.60 0.25 -31.53 16 12 H 0.03 1.94 7.99 -2.91 -0.02 1.92 16 13 C 0.01 0.33 5.47 84.65 0.46 0.79 16 14 N -0.95 -60.79 13.96 21.44 0.30 -60.49 16 15 Si 0.96 45.31 27.47 68.60 1.88 47.20 16 16 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 17 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 18 H -0.25 -10.88 6.54 99.48 0.65 -10.23 16 19 C -0.08 -1.78 3.07 -10.07 -0.03 -1.81 16 20 H 0.07 1.56 7.84 -2.38 -0.02 1.54 16 21 C -0.12 -2.79 8.06 71.98 0.58 -2.21 16 22 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 23 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 24 H 0.05 0.81 8.12 -2.39 -0.02 0.79 16 25 H 0.07 1.25 8.05 -2.39 -0.02 1.23 16 26 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 27 H 0.06 1.54 7.56 -2.39 -0.02 1.52 16 28 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.34 10.53 7.67 -89.69 -0.69 9.84 16 30 H 0.05 2.18 8.07 -2.39 -0.02 2.16 16 31 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.02 0.88 7.20 -2.39 -0.02 0.86 16 33 H 0.02 1.01 7.57 -2.39 -0.02 0.99 16 34 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 35 H 0.05 1.16 7.49 -2.38 -0.02 1.15 16 36 H 0.05 1.04 8.14 -2.38 -0.02 1.02 16 37 H 0.05 1.29 7.81 -2.39 -0.02 1.27 16 Total: -1.00 -64.56 288.91 3.32 -61.24 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: 0.26 Total: 13.08 kcal Atomic # 6 Polarization: -39.74 SS G_CDS: 3.04 Total: -36.70 kcal Atomic # 7 Polarization: -82.95 SS G_CDS: -1.87 Total: -84.81 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 1.88 Total: 47.20 kcal Total: -64.56 3.32 -61.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252089860.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.484 kcal (2) G-P(sol) polarization free energy of solvation -64.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds