Wall clock time and date at job start Mon Mar 30 2020 02:57:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 110.01996 * 2 1 4 4 C 1.54269 * 110.03414 * 238.55825 * 2 1 3 5 5 C 1.54882 * 104.19831 * 264.32705 * 4 2 1 6 6 C 1.54888 * 102.74855 * 322.05471 * 5 4 2 7 7 H 1.09001 * 110.49097 * 279.26569 * 6 5 4 8 8 N 1.46902 * 110.48779 * 156.62025 * 6 5 4 9 9 C 1.46897 * 111.00183 * 90.22878 * 8 6 5 10 10 C 1.52997 * 109.47426 * 180.02562 * 9 8 6 11 11 C 1.50695 * 109.47231 * 179.97438 * 10 9 8 12 12 H 1.08004 * 119.99854 * 0.02562 * 11 10 9 13 13 C 1.37877 * 120.00061 * 179.97438 * 11 10 9 14 14 N 1.31511 * 120.00029 * 180.02562 * 13 11 10 15 15 Si 1.86797 * 119.99951 * 0.02562 * 13 11 10 16 16 H 1.48491 * 109.47578 * 89.99507 * 15 13 11 17 17 H 1.48500 * 109.46978 * 210.00007 * 15 13 11 18 18 H 1.48498 * 109.47174 * 329.99146 * 15 13 11 19 19 C 1.53873 * 110.03228 * 121.39308 * 2 1 3 20 20 H 1.09002 * 110.03070 * 0.02562 * 19 2 1 21 21 C 1.53000 * 110.03127 * 238.61799 * 19 2 1 22 22 H 1.08994 * 109.47309 * 298.60550 * 1 2 3 23 23 H 1.09001 * 109.46733 * 58.61023 * 1 2 3 24 24 H 1.08996 * 109.46830 * 178.60312 * 1 2 3 25 25 H 1.09000 * 110.48429 * 23.01018 * 4 2 1 26 26 H 1.08998 * 110.48673 * 145.51198 * 4 2 1 27 27 H 1.08998 * 110.75605 * 80.36842 * 5 4 2 28 28 H 1.09003 * 110.75885 * 203.74658 * 5 4 2 29 29 H 1.00905 * 110.99864 * 214.18293 * 8 6 5 30 30 H 1.09004 * 109.46734 * 300.00583 * 9 8 6 31 31 H 1.09004 * 109.47183 * 59.99650 * 9 8 6 32 32 H 1.08995 * 109.46991 * 300.00049 * 10 9 8 33 33 H 1.09003 * 109.46609 * 59.99834 * 10 9 8 34 34 H 0.97004 * 120.00329 * 180.02562 * 14 13 11 35 35 H 1.08998 * 109.46874 * 62.09574 * 21 19 2 36 36 H 1.09005 * 109.46909 * 182.08823 * 21 19 2 37 37 H 1.08993 * 109.47621 * 302.08973 * 21 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9031 1.0242 0.0000 4 6 2.0585 -0.7560 -1.2365 5 6 2.3281 -2.1904 -0.7183 6 6 2.8875 -1.9404 0.7043 7 1 3.9440 -1.6764 0.6578 8 7 2.6889 -3.1247 1.5504 9 6 3.8403 -4.0329 1.4635 10 6 3.5969 -5.2518 2.3555 11 6 4.7778 -6.1837 2.2658 12 1 5.6181 -5.9315 1.6359 13 6 4.7860 -7.3578 2.9887 14 7 5.8167 -8.1708 2.9108 15 14 3.3329 -7.7935 4.0787 16 1 2.3423 -8.5738 3.2947 17 1 3.8035 -8.6054 5.2297 18 1 2.6980 -6.5477 4.5787 19 6 2.0571 -0.7530 1.2340 20 1 1.2228 -1.1189 1.8326 21 6 2.9398 0.1716 2.0747 22 1 -0.3633 0.4920 0.9022 23 1 -0.3633 0.5353 -0.8773 24 1 -0.3633 -1.0273 -0.0251 25 1 1.3062 -0.7704 -2.0252 26 1 2.9798 -0.2993 -1.5979 27 1 1.4031 -2.7654 -0.6740 28 1 3.0676 -2.6937 -1.3411 29 1 2.5090 -2.8595 2.5072 30 1 3.9691 -4.3583 0.4311 31 1 4.7390 -3.5129 1.7953 32 1 3.4678 -4.9266 3.3877 33 1 2.6983 -5.7716 2.0231 34 1 5.8223 -8.9969 3.4191 35 1 2.3468 1.0129 2.4331 36 1 3.3379 -0.3811 2.9257 37 1 3.7636 0.5414 1.4643 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000252089862.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:35 Heat of formation + Delta-G solvation = -34.264924 kcal Electronic energy + Delta-G solvation = -14228.969020 eV Core-core repulsion = 12004.596167 eV Total energy + Delta-G solvation = -2224.372853 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.14467 -35.18707 -32.74951 -31.25726 -30.67763 -28.82077 -25.42106 -23.91862 -23.25407 -20.52777 -19.97030 -19.19454 -16.74888 -15.58216 -15.33483 -14.59176 -14.14365 -13.80153 -13.68997 -13.21005 -12.89222 -12.63215 -12.52926 -12.39790 -11.88739 -11.59097 -11.35469 -11.04814 -10.75151 -10.60657 -10.55976 -10.41307 -10.32556 -10.05227 -9.76312 -9.60361 -9.19437 -8.51250 -7.86878 -6.02114 -4.00191 3.34681 3.41214 3.46355 4.48460 4.52559 4.58702 4.67412 4.97381 5.28358 5.31661 5.32618 5.42896 5.46229 5.53458 5.57894 5.68132 5.82654 5.87613 5.96078 6.05605 6.06936 6.17441 6.19213 6.27190 6.28792 6.33548 6.47639 6.53942 6.83108 7.21369 7.42922 7.68581 7.81917 7.97319 8.56150 9.02190 9.60517 11.11337 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.049895 B = 0.005938 C = 0.005838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 561.048617 B = 4714.615928 C = 4795.246766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.089 4.089 3 H 0.067 0.933 4 C -0.121 4.121 5 C -0.111 4.111 6 C 0.085 3.915 7 H 0.046 0.954 8 N -0.687 5.687 9 C 0.074 3.926 10 C -0.010 4.010 11 C -0.520 4.520 12 H 0.070 0.930 13 C 0.067 3.933 14 N -0.905 5.905 15 Si 0.883 3.117 16 H -0.277 1.277 17 H -0.289 1.289 18 H -0.265 1.265 19 C -0.097 4.097 20 H 0.080 0.920 21 C -0.146 4.146 22 H 0.051 0.949 23 H 0.050 0.950 24 H 0.058 0.942 25 H 0.063 0.937 26 H 0.061 0.939 27 H 0.075 0.925 28 H 0.061 0.939 29 H 0.334 0.666 30 H 0.063 0.937 31 H 0.020 0.980 32 H 0.012 0.988 33 H 0.020 0.980 34 H 0.263 0.737 35 H 0.052 0.948 36 H 0.054 0.946 37 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.221 16.856 -4.640 19.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.108 4.108 3 H 0.085 0.915 4 C -0.159 4.159 5 C -0.150 4.150 6 C -0.026 4.026 7 H 0.064 0.936 8 N -0.318 5.318 9 C -0.054 4.054 10 C -0.048 4.048 11 C -0.559 4.559 12 H 0.088 0.912 13 C -0.134 4.134 14 N -0.544 5.544 15 Si 0.710 3.290 16 H -0.202 1.202 17 H -0.215 1.215 18 H -0.190 1.190 19 C -0.116 4.116 20 H 0.099 0.901 21 C -0.203 4.203 22 H 0.070 0.930 23 H 0.069 0.931 24 H 0.077 0.923 25 H 0.082 0.918 26 H 0.079 0.921 27 H 0.094 0.906 28 H 0.079 0.921 29 H 0.151 0.849 30 H 0.081 0.919 31 H 0.038 0.962 32 H 0.031 0.969 33 H 0.039 0.961 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -9.505 16.344 -5.040 19.567 hybrid contribution 0.083 0.087 1.124 1.130 sum -9.421 16.431 -3.916 19.341 Atomic orbital electron populations 1.21870 0.95135 1.01998 1.01014 1.21731 0.95614 0.98790 0.94683 0.91464 1.22412 1.00417 0.96148 0.96921 1.22492 1.01488 0.95705 0.95288 1.22444 0.97085 0.89184 0.93839 0.93567 1.60709 1.42478 1.15370 1.13238 1.21979 0.89058 0.93493 1.00883 1.19546 0.97633 0.93176 0.94432 1.21087 1.03386 1.03696 1.27726 0.91161 1.25007 0.95899 0.96066 0.96464 1.69918 1.30172 1.11918 1.42390 0.86728 0.83097 0.78720 0.80434 1.20248 1.21523 1.19005 1.22031 0.98327 0.94968 0.96265 0.90139 1.21902 0.99488 0.99169 0.99776 0.93021 0.93093 0.92267 0.91797 0.92063 0.90623 0.92057 0.84861 0.91859 0.96159 0.96945 0.96136 0.92757 0.92846 0.92738 0.92785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 8.83 37.16 0.33 -1.03 16 2 C -0.09 -0.93 3.16 -89.50 -0.28 -1.21 16 3 H 0.07 0.65 7.67 -51.93 -0.40 0.25 16 4 C -0.12 -1.31 6.37 -25.07 -0.16 -1.47 16 5 C -0.11 -1.51 6.57 -24.74 -0.16 -1.67 16 6 C 0.08 1.22 2.73 -66.05 -0.18 1.04 16 7 H 0.05 0.71 7.54 -51.93 -0.39 0.31 16 8 N -0.69 -11.88 6.33 -104.97 -0.66 -12.54 16 9 C 0.07 1.54 5.49 -3.83 -0.02 1.52 16 10 C -0.01 -0.25 4.30 -27.89 -0.12 -0.37 16 11 C -0.52 -15.19 9.66 -34.44 -0.33 -15.53 16 12 H 0.07 2.20 7.99 -52.48 -0.42 1.78 16 13 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 14 N -0.90 -28.36 13.96 55.43 0.77 -27.59 16 15 Si 0.88 22.25 27.47 -169.99 -4.67 17.58 16 16 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 17 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 18 H -0.27 -6.45 6.54 56.52 0.37 -6.08 16 19 C -0.10 -1.15 2.62 -89.50 -0.23 -1.38 16 20 H 0.08 1.00 7.46 -51.93 -0.39 0.61 16 21 C -0.15 -1.58 8.84 37.16 0.33 -1.25 16 22 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 23 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.06 0.63 7.84 -51.93 -0.41 0.23 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 28 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 29 H 0.33 5.50 8.33 -39.29 -0.33 5.17 16 30 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 31 H 0.02 0.43 8.08 -51.93 -0.42 0.01 16 32 H 0.01 0.30 7.20 -51.93 -0.37 -0.07 16 33 H 0.02 0.51 7.57 -51.93 -0.39 0.12 16 34 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 35 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 291.95 15.07 4.40 4.40 Total: -1.00 -30.29 291.95 -8.01 -38.30 By element: Atomic # 1 Polarization: 6.24 SS G_CDS: -6.91 Total: -0.68 kcal Atomic # 6 Polarization: -18.53 SS G_CDS: -0.93 Total: -19.47 kcal Atomic # 7 Polarization: -40.24 SS G_CDS: 0.11 Total: -40.13 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -4.67 Total: 17.58 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -30.29 -8.01 -38.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252089862.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.031 kcal (2) G-P(sol) polarization free energy of solvation -30.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds