Wall clock time and date at job start Mon Mar 30 2020 03:05:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.47340 * 2 1 4 4 C 1.50703 * 109.46676 * 239.99902 * 2 1 3 5 5 H 1.08006 * 119.99695 * 239.99667 * 4 2 1 6 6 C 1.37877 * 119.99992 * 60.00507 * 4 2 1 7 7 N 1.31513 * 120.00154 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99824 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47021 * 89.99542 * 8 6 4 10 10 H 1.48502 * 109.47186 * 209.99990 * 8 6 4 11 11 H 1.48500 * 109.46892 * 329.99898 * 8 6 4 12 12 N 1.46904 * 109.46782 * 120.00109 * 2 1 3 13 13 C 1.44264 * 110.99957 * 290.23386 * 12 2 1 14 14 C 1.54059 * 111.91862 * 219.34795 * 13 12 2 15 15 C 1.54235 * 112.32262 * 318.78903 * 14 13 12 16 16 C 1.50457 * 113.07096 * 318.43089 * 15 14 13 17 17 H 1.08997 * 109.57427 * 332.27483 * 16 15 14 18 18 C 1.53000 * 109.57252 * 211.89797 * 16 15 14 19 19 C 1.54506 * 108.84813 * 92.08778 * 16 15 14 20 20 C 1.45859 * 111.59379 * 282.81113 * 19 16 15 21 21 H 1.08999 * 109.47250 * 173.36511 * 1 2 3 22 22 H 1.08999 * 109.46839 * 293.36643 * 1 2 3 23 23 H 1.09001 * 109.46971 * 53.36917 * 1 2 3 24 24 H 0.96997 * 120.00101 * 179.97438 * 7 6 4 25 25 H 1.08998 * 108.98056 * 339.95163 * 13 12 2 26 26 H 1.09004 * 108.97826 * 98.74476 * 13 12 2 27 27 H 1.09001 * 108.92057 * 79.59008 * 14 13 12 28 28 H 1.09005 * 108.92254 * 198.14696 * 14 13 12 29 29 H 1.09000 * 108.80152 * 197.46655 * 15 14 13 30 30 H 1.09002 * 108.60514 * 79.26109 * 15 14 13 31 31 H 1.09001 * 109.47528 * 300.63209 * 18 16 15 32 32 H 1.09000 * 109.47468 * 60.63904 * 18 16 15 33 33 H 1.09005 * 109.47132 * 180.63542 * 18 16 15 34 34 H 1.08997 * 109.05182 * 162.26289 * 19 16 15 35 35 H 1.08996 * 109.05342 * 43.35694 * 19 16 15 36 36 H 1.09000 * 108.79346 * 300.43366 * 20 19 16 37 37 H 1.09001 * 108.79255 * 182.21926 * 20 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6992 -0.2394 -2.4828 7 7 0.9428 0.8297 -2.6034 8 14 2.3224 -1.1196 -4.0080 9 1 1.3446 -2.1616 -4.4123 10 1 2.4872 -0.1403 -5.1121 11 1 3.6307 -1.7567 -3.7119 12 7 2.0196 -0.6926 1.1995 13 6 1.7528 0.0805 2.3879 14 6 2.9211 0.0163 3.3901 15 6 3.5189 -1.4010 3.5030 16 6 2.4727 -2.4821 3.5248 17 1 1.5462 -2.0854 3.9399 18 6 2.9620 -3.6515 4.3817 19 6 2.2262 -2.9674 2.0788 20 6 1.3990 -2.0274 1.3308 21 1 -0.3634 -1.0208 -0.1187 22 1 -0.3633 0.4076 0.9434 23 1 -0.3633 0.6132 -0.8247 24 1 0.7088 1.1613 -3.4844 25 1 1.5854 1.1196 2.1047 26 1 0.8530 -0.3054 2.8672 27 1 3.7017 0.7053 3.0676 28 1 2.5622 0.3261 4.3717 29 1 4.1062 -1.4626 4.4192 30 1 4.1790 -1.5687 2.6520 31 1 3.8913 -4.0420 3.9670 32 1 3.1353 -3.3073 5.4013 33 1 2.2077 -4.4384 4.3872 34 1 1.7265 -3.9357 2.1088 35 1 3.1850 -3.0788 1.5726 36 1 0.4410 -1.9208 1.8395 37 1 1.2216 -2.4318 0.3342 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000252127451.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:08 Heat of formation + Delta-G solvation = -13.657051 kcal Electronic energy + Delta-G solvation = -15091.359371 eV Core-core repulsion = 12867.880143 eV Total energy + Delta-G solvation = -2223.479229 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.88058 -35.39457 -32.65653 -31.86511 -29.52971 -27.31604 -25.29749 -24.56052 -22.87429 -21.24996 -19.30642 -18.45464 -16.25190 -15.28173 -14.73528 -14.21714 -14.17246 -14.03422 -13.16563 -12.81158 -12.71257 -12.16019 -12.04888 -11.45400 -11.38115 -11.19883 -10.95346 -10.75440 -10.60949 -10.45298 -10.23524 -10.13648 -10.06003 -9.88112 -9.56640 -9.49780 -8.80385 -8.35579 -7.08459 -5.97492 -3.99902 3.32840 3.39483 3.43932 4.44895 4.94495 5.12533 5.26497 5.34667 5.39491 5.66470 5.70675 5.83719 5.90138 6.01896 6.09244 6.15564 6.18558 6.28366 6.36432 6.56625 6.60446 6.71159 6.75841 6.78404 6.83237 6.87871 6.95809 6.98238 7.20847 7.55280 7.74142 7.92095 8.22659 8.45044 8.71848 9.06912 9.64905 11.10250 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.040742 B = 0.008980 C = 0.008183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.082577 B = 3117.380590 C = 3420.767272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.211 3.789 3 H 0.038 0.962 4 C -0.496 4.496 5 H 0.062 0.938 6 C 0.057 3.943 7 N -0.896 5.896 8 Si 0.895 3.105 9 H -0.283 1.283 10 H -0.288 1.288 11 H -0.274 1.274 12 N -0.521 5.521 13 C 0.058 3.942 14 C -0.107 4.107 15 C -0.101 4.101 16 C -0.089 4.089 17 H 0.061 0.939 18 C -0.143 4.143 19 C -0.105 4.105 20 C 0.060 3.940 21 H 0.031 0.969 22 H 0.004 0.996 23 H 0.082 0.918 24 H 0.259 0.741 25 H 0.054 0.946 26 H 0.025 0.975 27 H 0.056 0.944 28 H 0.046 0.954 29 H 0.043 0.957 30 H 0.067 0.933 31 H 0.052 0.948 32 H 0.047 0.953 33 H 0.048 0.952 34 H 0.051 0.949 35 H 0.065 0.935 36 H 0.017 0.983 37 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.751 -4.865 10.533 11.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.105 3.895 3 H 0.056 0.944 4 C -0.535 4.535 5 H 0.080 0.920 6 C -0.144 4.144 7 N -0.536 5.536 8 Si 0.723 3.277 9 H -0.209 1.209 10 H -0.214 1.214 11 H -0.199 1.199 12 N -0.244 5.244 13 C -0.072 4.072 14 C -0.146 4.146 15 C -0.138 4.138 16 C -0.107 4.107 17 H 0.080 0.920 18 C -0.200 4.200 19 C -0.143 4.143 20 C -0.068 4.068 21 H 0.050 0.950 22 H 0.024 0.976 23 H 0.101 0.899 24 H 0.069 0.931 25 H 0.073 0.927 26 H 0.043 0.957 27 H 0.075 0.925 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.086 0.914 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.070 0.930 35 H 0.084 0.916 36 H 0.035 0.965 37 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 2.203 -4.797 10.327 11.598 hybrid contribution -0.684 -0.243 -0.815 1.091 sum 1.519 -5.041 9.512 10.871 Atomic orbital electron populations 1.22410 1.00778 1.00294 0.99059 1.19427 0.89662 0.94210 0.86234 0.94439 1.21115 1.30351 1.12360 0.89646 0.91986 1.24931 0.95312 0.95146 0.98968 1.69902 1.37263 1.23112 1.23300 0.86548 0.79248 0.79273 0.82639 1.20895 1.21357 1.19864 1.61818 1.58223 1.02086 1.02270 1.21808 0.95231 0.98026 0.92164 1.21933 0.98525 0.96711 0.97421 1.21199 0.97866 0.94006 1.00752 1.20912 0.98887 0.95168 0.95758 0.92006 1.21873 1.00908 0.98220 0.99023 1.20689 1.01346 0.97719 0.94544 1.20821 0.94160 0.91354 1.00435 0.95033 0.97649 0.89939 0.93099 0.92715 0.95716 0.92478 0.93559 0.93823 0.91441 0.92919 0.93356 0.93240 0.92990 0.91601 0.96502 0.90343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.06 8.13 37.16 0.30 -3.75 16 2 C 0.21 5.33 2.13 -68.86 -0.15 5.18 16 3 H 0.04 1.05 7.77 -51.93 -0.40 0.64 16 4 C -0.50 -13.63 7.63 -34.44 -0.26 -13.89 16 5 H 0.06 1.72 7.54 -52.48 -0.40 1.32 16 6 C 0.06 1.59 5.30 -17.82 -0.09 1.49 16 7 N -0.90 -25.72 11.40 55.43 0.63 -25.09 16 8 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 9 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 10 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 12 N -0.52 -11.20 4.17 -232.95 -0.97 -12.17 16 13 C 0.06 1.08 4.15 -4.68 -0.02 1.06 16 14 C -0.11 -1.71 6.14 -25.53 -0.16 -1.86 16 15 C -0.10 -1.51 4.98 -27.35 -0.14 -1.65 16 16 C -0.09 -1.29 2.40 -91.10 -0.22 -1.51 16 17 H 0.06 0.93 7.15 -51.93 -0.37 0.56 16 18 C -0.14 -1.71 8.90 37.16 0.33 -1.38 16 19 C -0.11 -1.73 4.91 -29.32 -0.14 -1.87 16 20 C 0.06 1.18 3.46 -6.71 -0.02 1.16 16 21 H 0.03 0.75 6.99 -51.93 -0.36 0.39 16 22 H 0.00 0.10 7.34 -51.93 -0.38 -0.28 16 23 H 0.08 2.21 6.28 -51.93 -0.33 1.89 16 24 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 25 H 0.05 1.07 7.36 -51.93 -0.38 0.69 16 26 H 0.02 0.45 6.50 -51.93 -0.34 0.12 16 27 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.04 0.58 7.69 -51.93 -0.40 0.18 16 30 H 0.07 1.13 7.38 -51.93 -0.38 0.75 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.05 0.52 8.10 -51.93 -0.42 0.10 16 33 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.05 0.77 8.02 -51.93 -0.42 0.35 16 35 H 0.07 1.15 7.59 -51.93 -0.39 0.75 16 36 H 0.02 0.33 7.00 -51.93 -0.36 -0.04 16 37 H 0.08 1.72 6.31 -51.93 -0.33 1.39 16 LS Contribution 274.46 15.07 4.14 4.14 Total: -1.00 -27.70 274.46 -8.28 -35.98 By element: Atomic # 1 Polarization: 4.17 SS G_CDS: -6.49 Total: -2.32 kcal Atomic # 6 Polarization: -16.46 SS G_CDS: -0.57 Total: -17.03 kcal Atomic # 7 Polarization: -36.92 SS G_CDS: -0.34 Total: -37.26 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -27.70 -8.28 -35.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252127451.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.324 kcal (2) G-P(sol) polarization free energy of solvation -27.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds