Wall clock time and date at job start Mon Mar 30 2020 03:05:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.47340 * 2 1 4 4 C 1.50703 * 109.46676 * 239.99902 * 2 1 3 5 5 H 1.08006 * 119.99695 * 239.99667 * 4 2 1 6 6 C 1.37877 * 119.99992 * 60.00507 * 4 2 1 7 7 N 1.31513 * 120.00154 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99824 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47021 * 89.99542 * 8 6 4 10 10 H 1.48502 * 109.47186 * 209.99990 * 8 6 4 11 11 H 1.48500 * 109.46892 * 329.99898 * 8 6 4 12 12 N 1.46904 * 109.46782 * 120.00109 * 2 1 3 13 13 C 1.44264 * 110.99957 * 290.23386 * 12 2 1 14 14 C 1.54059 * 111.91862 * 219.34795 * 13 12 2 15 15 C 1.54235 * 112.32262 * 318.78903 * 14 13 12 16 16 C 1.50457 * 113.07096 * 318.43089 * 15 14 13 17 17 H 1.08997 * 109.57427 * 332.27483 * 16 15 14 18 18 C 1.53000 * 109.57252 * 211.89797 * 16 15 14 19 19 C 1.54506 * 108.84813 * 92.08778 * 16 15 14 20 20 C 1.45859 * 111.59379 * 282.81113 * 19 16 15 21 21 H 1.08999 * 109.47250 * 173.36511 * 1 2 3 22 22 H 1.08999 * 109.46839 * 293.36643 * 1 2 3 23 23 H 1.09001 * 109.46971 * 53.36917 * 1 2 3 24 24 H 0.96997 * 120.00101 * 179.97438 * 7 6 4 25 25 H 1.08998 * 108.98056 * 339.95163 * 13 12 2 26 26 H 1.09004 * 108.97826 * 98.74476 * 13 12 2 27 27 H 1.09001 * 108.92057 * 79.59008 * 14 13 12 28 28 H 1.09005 * 108.92254 * 198.14696 * 14 13 12 29 29 H 1.09000 * 108.80152 * 197.46655 * 15 14 13 30 30 H 1.09002 * 108.60514 * 79.26109 * 15 14 13 31 31 H 1.09001 * 109.47528 * 300.63209 * 18 16 15 32 32 H 1.09000 * 109.47468 * 60.63904 * 18 16 15 33 33 H 1.09005 * 109.47132 * 180.63542 * 18 16 15 34 34 H 1.08997 * 109.05182 * 162.26289 * 19 16 15 35 35 H 1.08996 * 109.05342 * 43.35694 * 19 16 15 36 36 H 1.09000 * 108.79346 * 300.43366 * 20 19 16 37 37 H 1.09001 * 108.79255 * 182.21926 * 20 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6992 -0.2394 -2.4828 7 7 0.9428 0.8297 -2.6034 8 14 2.3224 -1.1196 -4.0080 9 1 1.3446 -2.1616 -4.4123 10 1 2.4872 -0.1403 -5.1121 11 1 3.6307 -1.7567 -3.7119 12 7 2.0196 -0.6926 1.1995 13 6 1.7528 0.0805 2.3879 14 6 2.9211 0.0163 3.3901 15 6 3.5189 -1.4010 3.5030 16 6 2.4727 -2.4821 3.5248 17 1 1.5462 -2.0854 3.9399 18 6 2.9620 -3.6515 4.3817 19 6 2.2262 -2.9674 2.0788 20 6 1.3990 -2.0274 1.3308 21 1 -0.3634 -1.0208 -0.1187 22 1 -0.3633 0.4076 0.9434 23 1 -0.3633 0.6132 -0.8247 24 1 0.7088 1.1613 -3.4844 25 1 1.5854 1.1196 2.1047 26 1 0.8530 -0.3054 2.8672 27 1 3.7017 0.7053 3.0676 28 1 2.5622 0.3261 4.3717 29 1 4.1062 -1.4626 4.4192 30 1 4.1790 -1.5687 2.6520 31 1 3.8913 -4.0420 3.9670 32 1 3.1353 -3.3073 5.4013 33 1 2.2077 -4.4384 4.3872 34 1 1.7265 -3.9357 2.1088 35 1 3.1850 -3.0788 1.5726 36 1 0.4410 -1.9208 1.8395 37 1 1.2216 -2.4318 0.3342 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000252127451.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:08 Heat of formation + Delta-G solvation = -29.547635 kcal Electronic energy + Delta-G solvation = -15092.048439 eV Core-core repulsion = 12867.880143 eV Total energy + Delta-G solvation = -2224.168296 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.40472 -36.96360 -34.55526 -33.30290 -31.24142 -28.76087 -27.34406 -26.10370 -24.20882 -22.97847 -20.72406 -19.98827 -18.28738 -17.10998 -16.31561 -15.94594 -15.58509 -15.37563 -14.71952 -14.42484 -14.05535 -13.77014 -13.51173 -13.16136 -13.01800 -12.76300 -12.54463 -12.49389 -12.32834 -12.14847 -12.10532 -11.72387 -11.32941 -11.25698 -11.13213 -10.89158 -10.83016 -10.49352 -8.81210 -8.10724 -6.20374 1.41395 1.42360 1.53246 2.43159 3.18546 3.38064 3.87396 4.07633 4.14157 4.35940 4.46285 4.47628 4.58262 4.75248 4.77044 4.79651 4.86548 4.91244 4.96744 5.09238 5.09510 5.20015 5.22099 5.30476 5.38719 5.48985 5.53910 5.56275 5.61823 5.67162 5.76753 5.80604 6.24732 6.54184 6.87158 6.94157 7.48809 8.96142 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.040742 B = 0.008980 C = 0.008183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.082577 B = 3117.380590 C = 3420.767272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.215 3.785 3 H 0.003 0.997 4 C -0.510 4.510 5 H 0.054 0.946 6 C 0.010 3.990 7 N -0.923 5.923 8 Si 0.958 3.042 9 H -0.276 1.276 10 H -0.284 1.284 11 H -0.270 1.270 12 N -0.528 5.528 13 C 0.055 3.945 14 C -0.103 4.103 15 C -0.098 4.098 16 C -0.084 4.084 17 H 0.061 0.939 18 C -0.137 4.137 19 C -0.103 4.103 20 C 0.067 3.933 21 H 0.029 0.971 22 H 0.023 0.977 23 H 0.056 0.944 24 H 0.261 0.739 25 H 0.039 0.961 26 H 0.033 0.967 27 H 0.050 0.950 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.044 0.956 31 H 0.053 0.947 32 H 0.064 0.936 33 H 0.058 0.942 34 H 0.071 0.929 35 H 0.052 0.948 36 H 0.020 0.980 37 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.181 -6.150 11.932 13.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.108 3.892 3 H 0.021 0.979 4 C -0.549 4.549 5 H 0.072 0.928 6 C -0.188 4.188 7 N -0.563 5.563 8 Si 0.784 3.216 9 H -0.202 1.202 10 H -0.209 1.209 11 H -0.195 1.195 12 N -0.252 5.252 13 C -0.074 4.074 14 C -0.142 4.142 15 C -0.136 4.136 16 C -0.103 4.103 17 H 0.080 0.920 18 C -0.194 4.194 19 C -0.141 4.141 20 C -0.061 4.061 21 H 0.048 0.952 22 H 0.042 0.958 23 H 0.075 0.925 24 H 0.070 0.930 25 H 0.057 0.943 26 H 0.051 0.949 27 H 0.069 0.931 28 H 0.092 0.908 29 H 0.088 0.912 30 H 0.063 0.937 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.077 0.923 34 H 0.090 0.910 35 H 0.071 0.929 36 H 0.039 0.961 37 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 2.636 -6.091 11.745 13.491 hybrid contribution -0.837 0.187 -1.217 1.489 sum 1.800 -5.904 10.528 12.204 Atomic orbital electron populations 1.22192 1.00248 0.99613 0.98882 1.19184 0.89923 0.92533 0.87586 0.97909 1.21345 1.30373 1.12244 0.90898 0.92770 1.25697 0.95484 0.95829 1.01835 1.70028 1.38100 1.24246 1.23951 0.85554 0.78815 0.78250 0.78999 1.20154 1.20949 1.19464 1.61809 1.58365 1.02938 1.02047 1.21903 0.97145 0.96691 0.91707 1.21906 0.97133 0.97526 0.97609 1.21193 0.97878 0.93471 1.01063 1.20872 0.98792 0.96036 0.94560 0.92015 1.21817 1.01162 0.97250 0.99215 1.20653 1.00161 0.97726 0.95581 1.20816 0.95043 0.90788 0.99437 0.95180 0.95839 0.92532 0.93033 0.94267 0.94914 0.93124 0.90803 0.91237 0.93682 0.92742 0.91727 0.92296 0.91002 0.92896 0.96141 0.93220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.46 8.13 71.98 0.59 -6.88 16 2 C 0.21 11.18 2.13 44.17 0.09 11.27 16 3 H 0.00 0.17 7.77 -2.39 -0.02 0.16 16 4 C -0.51 -28.64 7.63 25.60 0.20 -28.45 16 5 H 0.05 3.06 7.54 -2.91 -0.02 3.04 16 6 C 0.01 0.55 5.30 84.65 0.45 0.99 16 7 N -0.92 -54.03 11.40 21.45 0.24 -53.78 16 8 Si 0.96 44.47 29.54 68.60 2.03 46.50 16 9 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 10 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 11 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 12 N -0.53 -22.91 4.17 -890.92 -3.71 -26.62 16 13 C 0.05 2.03 4.15 87.15 0.36 2.39 16 14 C -0.10 -3.09 6.14 31.37 0.19 -2.90 16 15 C -0.10 -2.73 4.98 30.19 0.15 -2.58 16 16 C -0.08 -2.21 2.40 -11.10 -0.03 -2.24 16 17 H 0.06 1.65 7.15 -2.39 -0.02 1.64 16 18 C -0.14 -2.78 8.90 71.98 0.64 -2.14 16 19 C -0.10 -3.25 4.91 28.92 0.14 -3.11 16 20 C 0.07 2.60 3.46 83.94 0.29 2.89 16 21 H 0.03 1.45 6.99 -2.39 -0.02 1.43 16 22 H 0.02 1.03 7.34 -2.39 -0.02 1.01 16 23 H 0.06 3.11 6.28 -2.39 -0.01 3.09 16 24 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 25 H 0.04 1.55 7.36 -2.39 -0.02 1.53 16 26 H 0.03 1.15 6.50 -2.39 -0.02 1.14 16 27 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.07 1.82 8.14 -2.38 -0.02 1.80 16 29 H 0.07 1.59 7.69 -2.39 -0.02 1.57 16 30 H 0.04 1.45 7.38 -2.39 -0.02 1.43 16 31 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.06 1.12 8.10 -2.39 -0.02 1.10 16 33 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 34 H 0.07 1.97 8.02 -2.39 -0.02 1.95 16 35 H 0.05 1.80 7.59 -2.39 -0.02 1.79 16 36 H 0.02 0.77 7.00 -2.39 -0.02 0.76 16 37 H 0.05 2.20 6.31 -2.39 -0.02 2.19 16 Total: -1.00 -59.75 274.46 2.64 -57.11 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: 1.01 Total: 7.53 kcal Atomic # 6 Polarization: -33.81 SS G_CDS: 3.08 Total: -30.74 kcal Atomic # 7 Polarization: -76.94 SS G_CDS: -3.47 Total: -80.40 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Total: -59.75 2.64 -57.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252127451.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.562 kcal (2) G-P(sol) polarization free energy of solvation -59.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds