Wall clock time and date at job start Mon Mar 30 2020 03:05:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08998 * 109.47558 * 2 1 4 4 C 1.50700 * 109.46861 * 240.00173 * 2 1 3 5 5 H 1.08002 * 120.00172 * 245.53101 * 4 2 1 6 6 C 1.37879 * 120.00146 * 65.53744 * 4 2 1 7 7 N 1.31514 * 119.99778 * 8.88567 * 6 4 2 8 8 Si 1.86799 * 119.99993 * 188.88902 * 6 4 2 9 9 H 1.48503 * 109.47135 * 84.99396 * 8 6 4 10 10 H 1.48505 * 109.46867 * 204.99112 * 8 6 4 11 11 H 1.48498 * 109.47495 * 324.99185 * 8 6 4 12 12 N 1.46897 * 109.47158 * 120.00651 * 2 1 3 13 13 C 1.46852 * 111.00234 * 176.04539 * 12 2 1 14 14 C 1.53036 * 109.52263 * 185.83709 * 13 12 2 15 15 C 1.53115 * 109.27938 * 300.82045 * 14 13 12 16 16 C 1.53114 * 109.16376 * 57.65599 * 15 14 13 17 17 H 1.09000 * 109.50197 * 62.28842 * 16 15 14 18 18 C 1.53006 * 109.50500 * 182.36877 * 16 15 14 19 19 C 1.46851 * 111.00072 * 300.25274 * 12 2 1 20 20 H 1.09000 * 109.45858 * 54.14300 * 19 12 2 21 21 C 1.52998 * 109.45929 * 294.17971 * 19 12 2 22 22 H 1.09003 * 109.47453 * 185.74793 * 1 2 3 23 23 H 1.09007 * 109.47123 * 305.74569 * 1 2 3 24 24 H 1.09003 * 109.47278 * 65.74394 * 1 2 3 25 25 H 0.97001 * 119.99808 * 180.02562 * 7 6 4 26 26 H 1.08997 * 109.46068 * 65.82169 * 13 12 2 27 27 H 1.09001 * 109.44944 * 305.84842 * 13 12 2 28 28 H 1.09006 * 109.50300 * 180.87586 * 14 13 12 29 29 H 1.09002 * 109.53567 * 60.78215 * 14 13 12 30 30 H 1.08999 * 109.51853 * 297.74777 * 15 14 13 31 31 H 1.09006 * 109.52235 * 177.56435 * 15 14 13 32 32 H 1.09000 * 109.46959 * 59.91587 * 18 16 15 33 33 H 1.08994 * 109.46632 * 179.97438 * 18 16 15 34 34 H 1.08998 * 109.46781 * 299.91955 * 18 16 15 35 35 H 1.09003 * 109.47372 * 299.94265 * 21 19 12 36 36 H 1.08999 * 109.47686 * 59.94772 * 21 19 12 37 37 H 1.09004 * 109.46926 * 179.97438 * 21 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2305 5 1 2.5774 -1.6377 -1.1340 6 6 1.7958 -0.1765 -2.4795 7 7 1.2896 1.0320 -2.5930 8 14 2.1945 -1.1697 -4.0105 9 1 1.0525 -2.0628 -4.3325 10 1 2.4383 -0.2479 -5.1490 11 1 3.4095 -1.9881 -3.7673 12 7 2.0196 -0.6926 1.1993 13 6 3.4845 -0.7947 1.1870 14 6 3.9480 -1.6450 2.3719 15 6 3.4738 -0.9967 3.6755 16 6 1.9494 -0.8579 3.6424 17 1 1.4952 -1.8468 3.5792 18 6 1.4724 -0.1572 4.9162 19 6 1.5438 -0.0304 2.4206 20 1 0.4580 0.0583 2.3862 21 6 2.1660 1.3639 2.5199 22 1 -0.3634 -1.0225 0.1029 23 1 -0.3634 0.6004 0.8341 24 1 -0.3634 0.4222 -0.9370 25 1 1.1229 1.4075 -3.4717 26 1 3.9186 0.2022 1.2635 27 1 3.8080 -1.2612 0.2565 28 1 5.0362 -1.7077 2.3713 29 1 3.5258 -2.6466 2.2890 30 1 3.9273 -0.0108 3.7779 31 1 3.7645 -1.6218 4.5199 32 1 1.9269 0.8316 4.9788 33 1 0.3872 -0.0583 4.8917 34 1 1.7633 -0.7465 5.7857 35 1 3.2519 1.2756 2.5548 36 1 1.8772 1.9535 1.6498 37 1 1.8126 1.8558 3.4261 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000252196256.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:53 Heat of formation + Delta-G solvation = -12.736355 kcal Electronic energy + Delta-G solvation = -15260.726533 eV Core-core repulsion = 13037.287228 eV Total energy + Delta-G solvation = -2223.439304 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.20455 -34.68515 -32.24677 -31.92641 -29.06791 -27.33053 -25.69744 -24.79188 -22.90581 -21.09292 -19.71609 -17.63080 -16.28878 -15.58376 -14.76481 -14.39978 -13.94801 -13.57011 -13.10447 -12.68103 -12.48777 -12.22190 -12.00130 -11.66787 -11.59618 -11.18461 -11.05816 -10.89506 -10.56936 -10.38104 -10.34917 -10.18311 -9.92478 -9.82891 -9.76387 -9.23578 -8.74292 -8.38577 -6.99154 -5.99587 -3.99850 3.33687 3.39722 3.42596 4.44689 4.95869 5.14310 5.31830 5.34234 5.43169 5.62551 5.80272 5.86208 5.89294 6.05934 6.06187 6.15904 6.22122 6.31102 6.36238 6.42537 6.49682 6.58322 6.72315 6.77333 6.84245 6.90513 7.03239 7.10260 7.21284 7.55805 7.79524 7.88176 8.23889 8.38262 8.71915 9.08239 9.63780 11.09446 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.045946 B = 0.009397 C = 0.008481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.269421 B = 2978.801112 C = 3300.744693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.209 3.791 3 H 0.010 0.990 4 C -0.504 4.504 5 H 0.062 0.938 6 C 0.060 3.940 7 N -0.892 5.892 8 Si 0.892 3.108 9 H -0.280 1.280 10 H -0.289 1.289 11 H -0.275 1.275 12 N -0.528 5.528 13 C 0.062 3.938 14 C -0.117 4.117 15 C -0.113 4.113 16 C -0.084 4.084 17 H 0.071 0.929 18 C -0.146 4.146 19 C 0.083 3.917 20 H 0.076 0.924 21 C -0.187 4.187 22 H 0.035 0.965 23 H 0.011 0.989 24 H 0.066 0.934 25 H 0.260 0.740 26 H 0.022 0.978 27 H 0.083 0.917 28 H 0.053 0.947 29 H 0.063 0.937 30 H 0.056 0.944 31 H 0.050 0.950 32 H 0.054 0.946 33 H 0.051 0.949 34 H 0.048 0.952 35 H 0.055 0.945 36 H 0.059 0.941 37 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.135 -1.775 10.796 11.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.103 3.897 3 H 0.028 0.972 4 C -0.542 4.542 5 H 0.080 0.920 6 C -0.141 4.141 7 N -0.531 5.531 8 Si 0.720 3.280 9 H -0.206 1.206 10 H -0.215 1.215 11 H -0.200 1.200 12 N -0.252 5.252 13 C -0.067 4.067 14 C -0.155 4.155 15 C -0.150 4.150 16 C -0.102 4.102 17 H 0.090 0.910 18 C -0.204 4.204 19 C -0.026 4.026 20 H 0.094 0.906 21 C -0.246 4.246 22 H 0.054 0.946 23 H 0.030 0.970 24 H 0.085 0.915 25 H 0.069 0.931 26 H 0.040 0.960 27 H 0.101 0.899 28 H 0.072 0.928 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.067 0.933 35 H 0.074 0.926 36 H 0.078 0.922 37 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 1.888 -2.118 10.626 10.999 hybrid contribution 0.459 0.416 -0.929 1.116 sum 2.347 -1.702 9.698 10.122 Atomic orbital electron populations 1.21756 0.98362 0.98694 0.99609 1.19233 0.91645 0.92876 0.85934 0.97250 1.21133 1.35209 1.07874 0.90019 0.91983 1.24932 0.95566 0.94682 0.98962 1.69972 1.45255 1.14262 1.23635 0.86617 0.78734 0.80000 0.82666 1.20619 1.21500 1.20018 1.62216 1.08792 1.52184 1.01990 1.21932 0.89245 0.97472 0.98013 1.21628 0.98966 1.00044 0.94899 1.21633 0.95795 1.00215 0.97372 1.21150 0.95533 0.99552 0.94007 0.91013 1.21870 1.00866 1.00481 0.97152 1.21630 0.99439 0.90871 0.90693 0.90577 1.22526 1.01418 0.99274 1.01334 0.94600 0.97001 0.91492 0.93062 0.95967 0.89870 0.92818 0.91795 0.92485 0.93081 0.92690 0.92952 0.93320 0.92592 0.92221 0.93271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.07 8.68 37.15 0.32 -2.75 16 2 C 0.21 5.28 1.65 -68.87 -0.11 5.17 16 3 H 0.01 0.28 6.42 -51.93 -0.33 -0.06 16 4 C -0.50 -13.86 7.63 -34.44 -0.26 -14.12 16 5 H 0.06 1.71 6.67 -52.49 -0.35 1.36 16 6 C 0.06 1.67 5.16 -17.82 -0.09 1.58 16 7 N -0.89 -25.78 12.14 55.43 0.67 -25.10 16 8 Si 0.89 21.51 29.55 -169.99 -5.02 16.49 16 9 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 10 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 12 N -0.53 -11.40 4.47 -220.14 -0.98 -12.38 16 13 C 0.06 1.24 4.92 -3.83 -0.02 1.22 16 14 C -0.12 -1.91 6.09 -26.65 -0.16 -2.07 16 15 C -0.11 -1.64 4.98 -26.61 -0.13 -1.77 16 16 C -0.08 -1.28 2.66 -90.54 -0.24 -1.52 16 17 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 18 C -0.15 -1.85 8.83 37.16 0.33 -1.52 16 19 C 0.08 1.53 2.22 -67.72 -0.15 1.37 16 20 H 0.08 1.46 6.12 -51.93 -0.32 1.14 16 21 C -0.19 -3.29 7.81 37.16 0.29 -3.00 16 22 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 23 H 0.01 0.25 6.59 -51.92 -0.34 -0.09 16 24 H 0.07 1.78 6.77 -51.93 -0.35 1.42 16 25 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 26 H 0.02 0.46 6.19 -51.93 -0.32 0.14 16 27 H 0.08 1.84 6.15 -51.93 -0.32 1.52 16 28 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 29 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 30 H 0.06 0.83 6.56 -51.93 -0.34 0.49 16 31 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.05 0.68 6.41 -51.93 -0.33 0.35 16 33 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.06 0.97 4.80 -51.93 -0.25 0.72 16 36 H 0.06 1.19 6.55 -51.93 -0.34 0.85 16 37 H 0.05 0.74 6.41 -51.93 -0.33 0.41 16 LS Contribution 269.04 15.07 4.05 4.05 Total: -1.00 -28.04 269.04 -7.54 -35.57 By element: Atomic # 1 Polarization: 4.81 SS G_CDS: -6.03 Total: -1.21 kcal Atomic # 6 Polarization: -17.18 SS G_CDS: -0.23 Total: -17.41 kcal Atomic # 7 Polarization: -37.18 SS G_CDS: -0.31 Total: -37.49 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -28.04 -7.54 -35.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252196256.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.837 kcal (2) G-P(sol) polarization free energy of solvation -28.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds