Wall clock time and date at job start Mon Mar 30 2020 03:05:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08998 * 109.47558 * 2 1 4 4 C 1.50700 * 109.46861 * 240.00173 * 2 1 3 5 5 H 1.08002 * 120.00172 * 245.53101 * 4 2 1 6 6 C 1.37879 * 120.00146 * 65.53744 * 4 2 1 7 7 N 1.31514 * 119.99778 * 8.88567 * 6 4 2 8 8 Si 1.86799 * 119.99993 * 188.88902 * 6 4 2 9 9 H 1.48503 * 109.47135 * 84.99396 * 8 6 4 10 10 H 1.48505 * 109.46867 * 204.99112 * 8 6 4 11 11 H 1.48498 * 109.47495 * 324.99185 * 8 6 4 12 12 N 1.46897 * 109.47158 * 120.00651 * 2 1 3 13 13 C 1.46852 * 111.00234 * 176.04539 * 12 2 1 14 14 C 1.53036 * 109.52263 * 185.83709 * 13 12 2 15 15 C 1.53115 * 109.27938 * 300.82045 * 14 13 12 16 16 C 1.53114 * 109.16376 * 57.65599 * 15 14 13 17 17 H 1.09000 * 109.50197 * 62.28842 * 16 15 14 18 18 C 1.53006 * 109.50500 * 182.36877 * 16 15 14 19 19 C 1.46851 * 111.00072 * 300.25274 * 12 2 1 20 20 H 1.09000 * 109.45858 * 54.14300 * 19 12 2 21 21 C 1.52998 * 109.45929 * 294.17971 * 19 12 2 22 22 H 1.09003 * 109.47453 * 185.74793 * 1 2 3 23 23 H 1.09007 * 109.47123 * 305.74569 * 1 2 3 24 24 H 1.09003 * 109.47278 * 65.74394 * 1 2 3 25 25 H 0.97001 * 119.99808 * 180.02562 * 7 6 4 26 26 H 1.08997 * 109.46068 * 65.82169 * 13 12 2 27 27 H 1.09001 * 109.44944 * 305.84842 * 13 12 2 28 28 H 1.09006 * 109.50300 * 180.87586 * 14 13 12 29 29 H 1.09002 * 109.53567 * 60.78215 * 14 13 12 30 30 H 1.08999 * 109.51853 * 297.74777 * 15 14 13 31 31 H 1.09006 * 109.52235 * 177.56435 * 15 14 13 32 32 H 1.09000 * 109.46959 * 59.91587 * 18 16 15 33 33 H 1.08994 * 109.46632 * 179.97438 * 18 16 15 34 34 H 1.08998 * 109.46781 * 299.91955 * 18 16 15 35 35 H 1.09003 * 109.47372 * 299.94265 * 21 19 12 36 36 H 1.08999 * 109.47686 * 59.94772 * 21 19 12 37 37 H 1.09004 * 109.46926 * 179.97438 * 21 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2305 5 1 2.5774 -1.6377 -1.1340 6 6 1.7958 -0.1765 -2.4795 7 7 1.2896 1.0320 -2.5930 8 14 2.1945 -1.1697 -4.0105 9 1 1.0525 -2.0628 -4.3325 10 1 2.4383 -0.2479 -5.1490 11 1 3.4095 -1.9881 -3.7673 12 7 2.0196 -0.6926 1.1993 13 6 3.4845 -0.7947 1.1870 14 6 3.9480 -1.6450 2.3719 15 6 3.4738 -0.9967 3.6755 16 6 1.9494 -0.8579 3.6424 17 1 1.4952 -1.8468 3.5792 18 6 1.4724 -0.1572 4.9162 19 6 1.5438 -0.0304 2.4206 20 1 0.4580 0.0583 2.3862 21 6 2.1660 1.3639 2.5199 22 1 -0.3634 -1.0225 0.1029 23 1 -0.3634 0.6004 0.8341 24 1 -0.3634 0.4222 -0.9370 25 1 1.1229 1.4075 -3.4717 26 1 3.9186 0.2022 1.2635 27 1 3.8080 -1.2612 0.2565 28 1 5.0362 -1.7077 2.3713 29 1 3.5258 -2.6466 2.2890 30 1 3.9273 -0.0108 3.7779 31 1 3.7645 -1.6218 4.5199 32 1 1.9269 0.8316 4.9788 33 1 0.3872 -0.0583 4.8917 34 1 1.7633 -0.7465 5.7857 35 1 3.2519 1.2756 2.5548 36 1 1.8772 1.9535 1.6498 37 1 1.8126 1.8558 3.4261 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000252196256.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:53 Heat of formation + Delta-G solvation = -29.630797 kcal Electronic energy + Delta-G solvation = -15261.459131 eV Core-core repulsion = 13037.287228 eV Total energy + Delta-G solvation = -2224.171902 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.70742 -36.41773 -34.06737 -33.40183 -30.83226 -28.80392 -27.46278 -26.44670 -24.46644 -22.51302 -21.49506 -19.06611 -18.35867 -17.27379 -16.26307 -16.23846 -15.54936 -14.85553 -14.66769 -14.39001 -14.06178 -13.59609 -13.51806 -13.36251 -12.88383 -12.86587 -12.79649 -12.57144 -12.35848 -12.15828 -12.05638 -11.82138 -11.50272 -11.29638 -11.28055 -10.73026 -10.63740 -10.51543 -8.76248 -8.13427 -6.20725 1.40284 1.42119 1.50955 2.42257 3.16878 3.39776 3.88236 4.06488 4.13851 4.30940 4.48706 4.54157 4.58713 4.70646 4.79206 4.82983 4.91535 4.96091 4.99167 5.04476 5.07597 5.10165 5.15824 5.21058 5.35014 5.36192 5.46271 5.48029 5.57560 5.68105 5.76420 5.83553 6.25067 6.48950 6.88314 6.97516 7.47329 8.95001 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.045946 B = 0.009397 C = 0.008481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.269421 B = 2978.801112 C = 3300.744693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.214 3.786 3 H -0.026 1.026 4 C -0.518 4.518 5 H 0.056 0.944 6 C 0.012 3.988 7 N -0.922 5.922 8 Si 0.955 3.045 9 H -0.275 1.275 10 H -0.285 1.285 11 H -0.269 1.269 12 N -0.535 5.535 13 C 0.062 3.938 14 C -0.110 4.110 15 C -0.108 4.108 16 C -0.079 4.079 17 H 0.066 0.934 18 C -0.140 4.140 19 C 0.078 3.922 20 H 0.066 0.934 21 C -0.177 4.177 22 H 0.036 0.964 23 H 0.030 0.970 24 H 0.040 0.960 25 H 0.261 0.739 26 H 0.012 0.988 27 H 0.054 0.946 28 H 0.074 0.926 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.080 0.920 32 H 0.059 0.941 33 H 0.054 0.946 34 H 0.070 0.930 35 H 0.057 0.943 36 H 0.025 0.975 37 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.687 -2.725 12.524 13.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.107 3.893 3 H -0.009 1.009 4 C -0.556 4.556 5 H 0.074 0.926 6 C -0.187 4.187 7 N -0.562 5.562 8 Si 0.781 3.219 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.194 1.194 12 N -0.259 5.259 13 C -0.066 4.066 14 C -0.148 4.148 15 C -0.146 4.146 16 C -0.098 4.098 17 H 0.084 0.916 18 C -0.198 4.198 19 C -0.031 4.031 20 H 0.084 0.916 21 C -0.236 4.236 22 H 0.056 0.944 23 H 0.049 0.951 24 H 0.059 0.941 25 H 0.070 0.930 26 H 0.030 0.970 27 H 0.073 0.927 28 H 0.093 0.907 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.099 0.901 32 H 0.078 0.922 33 H 0.073 0.927 34 H 0.089 0.911 35 H 0.076 0.924 36 H 0.044 0.956 37 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 2.444 -3.077 12.375 12.984 hybrid contribution 0.293 0.731 -1.438 1.640 sum 2.737 -2.345 10.937 11.515 Atomic orbital electron populations 1.21572 0.97879 0.98776 0.98933 1.19004 0.91975 0.91001 0.87278 1.00894 1.21406 1.35173 1.07710 0.91314 0.92626 1.25700 0.95544 0.95554 1.01896 1.70092 1.46230 1.15603 1.24262 0.85619 0.78726 0.78601 0.78991 1.20061 1.21077 1.19355 1.62176 1.09741 1.51990 1.01945 1.21924 0.88365 0.97492 0.98832 1.21578 1.00245 0.98998 0.93972 1.21631 0.94956 1.00832 0.97155 1.21125 0.96280 0.98861 0.93535 0.91563 1.21822 1.01055 1.00702 0.96202 1.21776 0.98844 0.91808 0.90687 0.91614 1.22424 1.01438 0.98557 1.01151 0.94443 0.95116 0.94140 0.93041 0.96985 0.92708 0.90714 0.92037 0.92133 0.90118 0.92244 0.92713 0.91091 0.92446 0.95583 0.90364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.65 8.68 71.98 0.62 -5.03 16 2 C 0.21 11.18 1.65 44.17 0.07 11.25 16 3 H -0.03 -1.55 6.42 -2.39 -0.02 -1.56 16 4 C -0.52 -29.21 7.63 25.60 0.20 -29.02 16 5 H 0.06 3.14 6.67 -2.91 -0.02 3.12 16 6 C 0.01 0.66 5.16 84.66 0.44 1.10 16 7 N -0.92 -54.69 12.14 21.45 0.26 -54.42 16 8 Si 0.95 44.68 29.55 68.60 2.03 46.70 16 9 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 10 H -0.29 -13.07 7.11 99.48 0.71 -12.37 16 11 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 12 N -0.53 -23.29 4.47 -850.41 -3.80 -27.08 16 13 C 0.06 2.51 4.92 86.32 0.42 2.93 16 14 C -0.11 -3.35 6.09 30.64 0.19 -3.16 16 15 C -0.11 -2.79 4.98 30.67 0.15 -2.64 16 16 C -0.08 -2.21 2.66 -10.74 -0.03 -2.24 16 17 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 18 C -0.14 -3.03 8.83 71.98 0.64 -2.39 16 19 C 0.08 2.79 2.22 44.94 0.10 2.89 16 20 H 0.07 2.48 6.12 -2.39 -0.01 2.46 16 21 C -0.18 -6.13 7.81 71.98 0.56 -5.56 16 22 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 23 H 0.03 1.36 6.59 -2.38 -0.02 1.34 16 24 H 0.04 2.20 6.77 -2.39 -0.02 2.18 16 25 H 0.26 14.70 8.31 -92.71 -0.77 13.93 16 26 H 0.01 0.50 6.19 -2.39 -0.01 0.49 16 27 H 0.05 2.48 6.15 -2.39 -0.01 2.47 16 28 H 0.07 1.96 8.14 -2.38 -0.02 1.95 16 29 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.06 1.54 6.56 -2.39 -0.02 1.53 16 31 H 0.08 1.68 8.14 -2.38 -0.02 1.66 16 32 H 0.06 1.24 6.41 -2.39 -0.02 1.22 16 33 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.06 1.95 4.80 -2.39 -0.01 1.94 16 36 H 0.03 1.05 6.55 -2.39 -0.02 1.03 16 37 H 0.08 2.21 6.41 -2.38 -0.02 2.19 16 Total: -1.00 -61.37 269.04 2.88 -58.49 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: 1.03 Total: 8.19 kcal Atomic # 6 Polarization: -35.23 SS G_CDS: 3.36 Total: -31.87 kcal Atomic # 7 Polarization: -77.97 SS G_CDS: -3.54 Total: -81.51 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.70 kcal Total: -61.37 2.88 -58.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252196256.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.860 kcal (2) G-P(sol) polarization free energy of solvation -61.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds