Wall clock time and date at job start Mon Mar 30 2020 02:55:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52999 * 109.47317 * 119.99641 * 2 1 3 5 5 C 1.53002 * 109.47628 * 180.02562 * 4 2 1 6 6 C 1.53000 * 109.46806 * 300.00074 * 5 4 2 7 7 H 1.08992 * 109.47399 * 299.99952 * 6 5 4 8 8 N 1.46901 * 109.46769 * 179.97438 * 6 5 4 9 9 C 1.46894 * 110.99800 * 85.00337 * 8 6 5 10 10 C 1.53008 * 109.47186 * 179.97438 * 9 8 6 11 11 C 1.50702 * 109.47037 * 180.02562 * 10 9 8 12 12 H 1.07999 * 119.99960 * 359.97438 * 11 10 9 13 13 C 1.37875 * 119.99470 * 180.02562 * 11 10 9 14 14 N 1.31515 * 120.00471 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 119.99680 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.47291 * 359.97438 * 15 13 11 17 17 H 1.48505 * 109.47338 * 119.99645 * 15 13 11 18 18 H 1.48503 * 109.47084 * 239.99763 * 15 13 11 19 19 C 1.53002 * 109.46911 * 59.99917 * 6 5 4 20 20 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 21 21 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 23 23 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 24 24 H 1.09001 * 109.47362 * 300.00732 * 4 2 1 25 25 H 1.09002 * 109.46716 * 60.00091 * 4 2 1 26 26 H 1.09001 * 109.47142 * 180.02562 * 5 4 2 27 27 H 1.09002 * 109.46838 * 59.99718 * 5 4 2 28 28 H 1.00892 * 111.00435 * 321.04633 * 8 6 5 29 29 H 1.08996 * 109.47550 * 299.99592 * 9 8 6 30 30 H 1.09006 * 109.47152 * 59.99992 * 9 8 6 31 31 H 1.09003 * 109.46851 * 299.99647 * 10 9 8 32 32 H 1.08993 * 109.46704 * 59.99795 * 10 9 8 33 33 H 0.97002 * 120.00057 * 180.02562 * 14 13 11 34 34 H 1.09004 * 109.46930 * 179.97438 * 19 6 5 35 35 H 1.09002 * 109.47067 * 59.99825 * 19 6 5 36 36 H 1.09002 * 109.47103 * 300.00247 * 20 2 1 37 37 H 1.09001 * 109.47066 * 60.00169 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5700 -0.7206 1.2497 6 6 4.0805 -1.4416 0.0004 7 1 3.7176 -2.4693 0.0002 8 7 5.5495 -1.4406 0.0005 9 6 6.0767 -2.5636 0.7871 10 6 7.6062 -2.5295 0.7633 11 6 8.1469 -3.6820 1.5698 12 1 7.4677 -4.3697 2.0515 13 6 9.5088 -3.8577 1.6935 14 7 10.3360 -3.0200 1.1073 15 14 10.1792 -5.2859 2.6937 16 1 9.0500 -6.0758 3.2471 17 1 11.0106 -6.1540 1.8217 18 1 11.0098 -4.7629 3.8081 19 6 3.5705 -0.7204 -1.2488 20 6 2.0400 -0.7212 -1.2491 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 0.5139 0.8900 24 1 1.6766 -0.2074 2.1393 25 1 1.6767 -1.7488 1.2493 26 1 3.9333 -1.2348 2.1395 27 1 3.9330 0.3072 1.2498 28 1 5.9105 -0.5613 0.3387 29 1 5.7271 -2.4821 1.8163 30 1 5.7278 -3.5030 0.3582 31 1 7.9554 -2.6113 -0.2660 32 1 7.9553 -1.5901 1.1919 33 1 11.2941 -3.1439 1.1940 34 1 3.9346 -1.2337 -2.1388 35 1 3.9335 0.3074 -1.2486 36 1 1.6767 -1.7489 -1.2491 37 1 1.6768 -0.2074 -2.1391 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000253138276.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:38 Heat of formation + Delta-G solvation = -43.542957 kcal Electronic energy + Delta-G solvation = -14067.180205 eV Core-core repulsion = 11842.405026 eV Total energy + Delta-G solvation = -2224.775179 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.97529 -35.48216 -33.08326 -31.24631 -30.65016 -28.53854 -25.46127 -23.53270 -22.57071 -20.73870 -20.65266 -19.57103 -16.32158 -15.65589 -14.54980 -14.44189 -14.29743 -14.10957 -14.06427 -13.42382 -12.78739 -12.52822 -12.12558 -12.09761 -11.95656 -11.61516 -11.11931 -11.01100 -10.92564 -10.74305 -10.63000 -10.48582 -10.22621 -10.08398 -9.88381 -9.29235 -9.08612 -8.33289 -7.69087 -5.97541 -3.99925 3.32550 3.39763 3.43989 4.44768 4.61787 4.71632 4.76217 5.03616 5.16154 5.30644 5.38434 5.47806 5.54412 5.57829 5.59597 5.64038 5.78389 5.88276 5.91674 6.07518 6.13378 6.21383 6.24740 6.27990 6.40983 6.44408 6.54040 6.60764 7.02938 7.56790 7.77886 7.87864 8.03086 8.13031 8.47049 9.07751 9.63799 11.13978 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.071961 B = 0.005039 C = 0.004878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 389.008456 B = 5555.445717 C = 5738.210576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.093 4.093 3 H 0.067 0.933 4 C -0.109 4.109 5 C -0.149 4.149 6 C 0.087 3.913 7 H 0.071 0.929 8 N -0.688 5.688 9 C 0.066 3.934 10 C 0.024 3.976 11 C -0.520 4.520 12 H 0.054 0.946 13 C 0.057 3.943 14 N -0.894 5.894 15 Si 0.892 3.108 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.284 1.284 19 C -0.106 4.106 20 C -0.113 4.113 21 H 0.053 0.947 22 H 0.052 0.948 23 H 0.051 0.949 24 H 0.056 0.944 25 H 0.060 0.940 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.335 0.665 29 H 0.014 0.986 30 H 0.056 0.944 31 H 0.025 0.975 32 H 0.013 0.987 33 H 0.260 0.740 34 H 0.067 0.933 35 H 0.058 0.942 36 H 0.060 0.940 37 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.164 5.923 -2.010 18.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.112 4.112 3 H 0.086 0.914 4 C -0.147 4.147 5 C -0.189 4.189 6 C -0.024 4.024 7 H 0.089 0.911 8 N -0.317 5.317 9 C -0.062 4.062 10 C -0.013 4.013 11 C -0.559 4.559 12 H 0.073 0.927 13 C -0.144 4.144 14 N -0.533 5.533 15 Si 0.720 3.280 16 H -0.198 1.198 17 H -0.210 1.210 18 H -0.210 1.210 19 C -0.145 4.145 20 C -0.151 4.151 21 H 0.072 0.928 22 H 0.071 0.929 23 H 0.070 0.930 24 H 0.075 0.925 25 H 0.079 0.921 26 H 0.080 0.920 27 H 0.079 0.921 28 H 0.153 0.847 29 H 0.033 0.967 30 H 0.075 0.925 31 H 0.043 0.957 32 H 0.031 0.969 33 H 0.069 0.931 34 H 0.086 0.914 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -16.908 5.604 -2.639 18.007 hybrid contribution 0.317 -0.451 1.532 1.629 sum -16.591 5.153 -1.106 17.408 Atomic orbital electron populations 1.21837 0.95662 1.01629 1.01296 1.21153 0.94961 0.99682 0.95358 0.91415 1.21527 0.95570 1.00458 0.97143 1.22295 0.95768 1.01082 0.99708 1.21567 0.88855 0.98843 0.93096 0.91095 1.60688 1.05068 1.07209 1.58763 1.22164 0.99014 0.91928 0.93070 1.19081 0.87733 0.96800 0.97723 1.21227 0.91587 1.11657 1.31433 0.92746 1.25005 0.97150 0.96376 0.95863 1.69987 1.02647 1.36744 1.43923 0.86541 0.78976 0.82530 0.79972 1.19780 1.20967 1.21045 1.21515 0.93891 1.00697 0.98347 1.21602 0.96042 1.00413 0.97024 0.92806 0.92900 0.92979 0.92477 0.92130 0.91996 0.92072 0.84739 0.96730 0.92541 0.95691 0.96868 0.93072 0.91413 0.92278 0.92147 0.92234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.19 37.16 0.34 -0.91 16 2 C -0.09 -0.94 2.72 -90.63 -0.25 -1.18 16 3 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 4 C -0.11 -1.21 5.20 -26.73 -0.14 -1.34 16 5 C -0.15 -1.98 5.17 -26.73 -0.14 -2.12 16 6 C 0.09 1.29 2.47 -67.71 -0.17 1.13 16 7 H 0.07 1.11 7.80 -51.93 -0.41 0.71 16 8 N -0.69 -12.63 6.25 -106.73 -0.67 -13.29 16 9 C 0.07 1.44 5.42 -3.82 -0.02 1.42 16 10 C 0.02 0.64 5.23 -27.88 -0.15 0.50 16 11 C -0.52 -15.05 9.11 -34.44 -0.31 -15.36 16 12 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 13 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 14 N -0.89 -27.32 13.29 55.43 0.74 -26.59 16 15 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 16 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 17 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 18 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 19 C -0.11 -1.37 5.53 -26.71 -0.15 -1.52 16 20 C -0.11 -1.20 5.21 -26.71 -0.14 -1.34 16 21 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 22 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 23 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 24 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 26 H 0.06 0.90 7.45 -51.93 -0.39 0.51 16 27 H 0.06 0.80 8.13 -51.93 -0.42 0.37 16 28 H 0.34 5.99 8.47 -39.30 -0.33 5.66 16 29 H 0.01 0.31 7.44 -51.93 -0.39 -0.08 16 30 H 0.06 1.24 8.06 -51.93 -0.42 0.82 16 31 H 0.02 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 34 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 292.21 15.07 4.40 4.40 Total: -1.00 -29.78 292.21 -8.73 -38.50 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: -6.97 Total: -0.77 kcal Atomic # 6 Polarization: -17.96 SS G_CDS: -1.21 Total: -19.17 kcal Atomic # 7 Polarization: -39.95 SS G_CDS: 0.07 Total: -39.88 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -29.78 -8.73 -38.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000253138276.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.038 kcal (2) G-P(sol) polarization free energy of solvation -29.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds