Wall clock time and date at job start Mon Mar 30 2020 02:55:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52999 * 109.47317 * 119.99641 * 2 1 3 5 5 C 1.53002 * 109.47628 * 180.02562 * 4 2 1 6 6 C 1.53000 * 109.46806 * 300.00074 * 5 4 2 7 7 H 1.08992 * 109.47399 * 299.99952 * 6 5 4 8 8 N 1.46901 * 109.46769 * 179.97438 * 6 5 4 9 9 C 1.46894 * 110.99800 * 85.00337 * 8 6 5 10 10 C 1.53008 * 109.47186 * 179.97438 * 9 8 6 11 11 C 1.50702 * 109.47037 * 180.02562 * 10 9 8 12 12 H 1.07999 * 119.99960 * 359.97438 * 11 10 9 13 13 C 1.37875 * 119.99470 * 180.02562 * 11 10 9 14 14 N 1.31515 * 120.00471 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 119.99680 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.47291 * 359.97438 * 15 13 11 17 17 H 1.48505 * 109.47338 * 119.99645 * 15 13 11 18 18 H 1.48503 * 109.47084 * 239.99763 * 15 13 11 19 19 C 1.53002 * 109.46911 * 59.99917 * 6 5 4 20 20 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 21 21 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 23 23 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 24 24 H 1.09001 * 109.47362 * 300.00732 * 4 2 1 25 25 H 1.09002 * 109.46716 * 60.00091 * 4 2 1 26 26 H 1.09001 * 109.47142 * 180.02562 * 5 4 2 27 27 H 1.09002 * 109.46838 * 59.99718 * 5 4 2 28 28 H 1.00892 * 111.00435 * 321.04633 * 8 6 5 29 29 H 1.08996 * 109.47550 * 299.99592 * 9 8 6 30 30 H 1.09006 * 109.47152 * 59.99992 * 9 8 6 31 31 H 1.09003 * 109.46851 * 299.99647 * 10 9 8 32 32 H 1.08993 * 109.46704 * 59.99795 * 10 9 8 33 33 H 0.97002 * 120.00057 * 180.02562 * 14 13 11 34 34 H 1.09004 * 109.46930 * 179.97438 * 19 6 5 35 35 H 1.09002 * 109.47067 * 59.99825 * 19 6 5 36 36 H 1.09002 * 109.47103 * 300.00247 * 20 2 1 37 37 H 1.09001 * 109.47066 * 60.00169 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5700 -0.7206 1.2497 6 6 4.0805 -1.4416 0.0004 7 1 3.7176 -2.4693 0.0002 8 7 5.5495 -1.4406 0.0005 9 6 6.0767 -2.5636 0.7871 10 6 7.6062 -2.5295 0.7633 11 6 8.1469 -3.6820 1.5698 12 1 7.4677 -4.3697 2.0515 13 6 9.5088 -3.8577 1.6935 14 7 10.3360 -3.0200 1.1073 15 14 10.1792 -5.2859 2.6937 16 1 9.0500 -6.0758 3.2471 17 1 11.0106 -6.1540 1.8217 18 1 11.0098 -4.7629 3.8081 19 6 3.5705 -0.7204 -1.2488 20 6 2.0400 -0.7212 -1.2491 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 0.5139 0.8900 24 1 1.6766 -0.2074 2.1393 25 1 1.6767 -1.7488 1.2493 26 1 3.9333 -1.2348 2.1395 27 1 3.9330 0.3072 1.2498 28 1 5.9105 -0.5613 0.3387 29 1 5.7271 -2.4821 1.8163 30 1 5.7278 -3.5030 0.3582 31 1 7.9554 -2.6113 -0.2660 32 1 7.9553 -1.5901 1.1919 33 1 11.2941 -3.1439 1.1940 34 1 3.9346 -1.2337 -2.1388 35 1 3.9335 0.3074 -1.2486 36 1 1.6767 -1.7489 -1.2491 37 1 1.6768 -0.2074 -2.1391 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000253138276.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:38 Heat of formation + Delta-G solvation = -61.390106 kcal Electronic energy + Delta-G solvation = -14067.954115 eV Core-core repulsion = 11842.405026 eV Total energy + Delta-G solvation = -2225.549089 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.04811 -36.94485 -35.05013 -32.74259 -31.64195 -30.17904 -26.87327 -25.18789 -23.57574 -22.49959 -21.80916 -20.61035 -18.52946 -16.95155 -16.40947 -15.92952 -15.57784 -15.13863 -15.07626 -14.59417 -14.32796 -14.21005 -13.39362 -13.20707 -13.06873 -12.98917 -12.85066 -12.57841 -12.37697 -12.09240 -11.90899 -11.74724 -11.57851 -11.40879 -11.30092 -11.03056 -10.89330 -10.57968 -9.19094 -8.21395 -6.33230 1.39679 1.40347 1.53785 2.39882 3.11917 3.33434 3.76424 3.83993 4.05952 4.17323 4.29606 4.49405 4.50124 4.58141 4.61358 4.63835 4.69720 4.83847 4.94193 5.01579 5.04656 5.07210 5.17095 5.20422 5.27841 5.31619 5.42783 5.45874 5.51637 5.60696 5.67442 5.79032 6.15523 6.31571 6.57307 6.84167 7.36253 8.91091 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.071961 B = 0.005039 C = 0.004878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 389.008456 B = 5555.445717 C = 5738.210576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.091 4.091 3 H 0.069 0.931 4 C -0.105 4.105 5 C -0.144 4.144 6 C 0.086 3.914 7 H 0.063 0.937 8 N -0.695 5.695 9 C 0.086 3.914 10 C 0.031 3.969 11 C -0.545 4.545 12 H 0.059 0.941 13 C 0.000 4.000 14 N -0.932 5.932 15 Si 0.968 3.032 16 H -0.262 1.262 17 H -0.277 1.277 18 H -0.277 1.277 19 C -0.102 4.102 20 C -0.108 4.108 21 H 0.054 0.946 22 H 0.061 0.939 23 H 0.058 0.942 24 H 0.068 0.932 25 H 0.060 0.940 26 H 0.046 0.954 27 H 0.063 0.937 28 H 0.337 0.663 29 H 0.017 0.983 30 H 0.053 0.947 31 H -0.007 1.007 32 H -0.009 1.009 33 H 0.264 0.736 34 H 0.056 0.944 35 H 0.060 0.940 36 H 0.061 0.939 37 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.645 5.645 -1.495 19.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.109 4.109 3 H 0.087 0.913 4 C -0.143 4.143 5 C -0.184 4.184 6 C -0.024 4.024 7 H 0.081 0.919 8 N -0.325 5.325 9 C -0.043 4.043 10 C -0.007 4.007 11 C -0.583 4.583 12 H 0.078 0.922 13 C -0.197 4.197 14 N -0.572 5.572 15 Si 0.793 3.207 16 H -0.186 1.186 17 H -0.202 1.202 18 H -0.202 1.202 19 C -0.140 4.140 20 C -0.146 4.146 21 H 0.073 0.927 22 H 0.080 0.920 23 H 0.077 0.923 24 H 0.087 0.913 25 H 0.078 0.922 26 H 0.064 0.936 27 H 0.082 0.918 28 H 0.155 0.845 29 H 0.036 0.964 30 H 0.072 0.928 31 H 0.012 0.988 32 H 0.009 0.991 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -18.416 5.334 -2.128 19.291 hybrid contribution 0.782 -0.319 1.333 1.578 sum -17.634 5.014 -0.796 18.350 Atomic orbital electron populations 1.21799 0.94138 1.02008 1.02134 1.21139 0.96184 0.99359 0.94246 0.91291 1.21512 0.93544 1.00881 0.98376 1.22211 0.97624 1.00624 0.97892 1.21663 0.86436 0.99123 0.95155 0.91873 1.60629 1.07587 1.06250 1.57987 1.21761 0.95587 0.93169 0.93747 1.18936 0.91186 0.95290 0.95241 1.21640 0.92330 1.12423 1.31954 0.92242 1.25991 0.97454 0.99376 0.96926 1.70118 1.03163 1.38728 1.45201 0.85351 0.78406 0.78712 0.78268 1.18595 1.20243 1.20208 1.21466 0.95747 1.00174 0.96583 1.21577 0.93933 1.00886 0.98167 0.92664 0.91970 0.92313 0.91343 0.92153 0.93568 0.91784 0.84528 0.96444 0.92827 0.98827 0.99076 0.92697 0.92480 0.92127 0.92073 0.90680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.03 9.19 71.98 0.66 -1.37 16 2 C -0.09 -1.60 2.72 -10.80 -0.03 -1.63 16 3 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 4 C -0.10 -2.12 5.20 30.59 0.16 -1.96 16 5 C -0.14 -3.70 5.17 30.60 0.16 -3.54 16 6 C 0.09 2.52 2.47 44.92 0.11 2.63 16 7 H 0.06 1.95 7.80 -2.39 -0.02 1.93 16 8 N -0.70 -25.81 6.25 -491.57 -3.07 -28.88 16 9 C 0.09 3.80 5.42 86.31 0.47 4.27 16 10 C 0.03 1.71 5.23 29.85 0.16 1.86 16 11 C -0.55 -31.95 9.11 25.60 0.23 -31.72 16 12 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 13 C 0.00 0.03 5.46 84.65 0.46 0.49 16 14 N -0.93 -57.88 13.29 21.45 0.28 -57.60 16 15 Si 0.97 44.92 29.54 68.60 2.03 46.95 16 16 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 17 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 18 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 19 C -0.10 -2.51 5.53 30.61 0.17 -2.34 16 20 C -0.11 -2.06 5.21 30.61 0.16 -1.90 16 21 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 22 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 23 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 24 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 25 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 26 H 0.05 1.32 7.45 -2.39 -0.02 1.30 16 27 H 0.06 1.60 8.13 -2.39 -0.02 1.58 16 28 H 0.34 12.25 8.47 -89.70 -0.76 11.49 16 29 H 0.02 0.75 7.44 -2.39 -0.02 0.73 16 30 H 0.05 2.37 8.06 -2.38 -0.02 2.35 16 31 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 32 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 33 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 34 H 0.06 1.53 8.14 -2.38 -0.02 1.51 16 35 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 Total: -1.00 -63.80 292.21 2.19 -61.61 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: 0.24 Total: 13.14 kcal Atomic # 6 Polarization: -37.92 SS G_CDS: 2.71 Total: -35.22 kcal Atomic # 7 Polarization: -83.69 SS G_CDS: -2.79 Total: -86.48 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Total: -63.80 2.19 -61.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000253138276.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.216 kcal (2) G-P(sol) polarization free energy of solvation -63.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds