Wall clock time and date at job start Mon Mar 30 2020 03:16:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53007 * 109.46672 * 2 1 4 4 C 1.53001 * 109.47419 * 120.00098 * 2 1 3 5 5 N 1.46900 * 109.46804 * 65.28594 * 4 2 1 6 6 C 1.47843 * 111.00084 * 65.67244 * 5 4 2 7 7 C 1.54904 * 104.79510 * 146.36020 * 6 5 4 8 8 C 1.55138 * 101.65680 * 322.92995 * 7 6 5 9 9 H 1.08999 * 110.70326 * 277.27450 * 8 7 6 10 10 C 1.50696 * 110.70859 * 154.03645 * 8 7 6 11 11 H 1.08003 * 120.00139 * 246.40128 * 10 8 7 12 12 C 1.37879 * 120.00205 * 66.39845 * 10 8 7 13 13 N 1.31513 * 119.99555 * 0.02562 * 12 10 8 14 14 Si 1.86797 * 120.00037 * 179.97438 * 12 10 8 15 15 H 1.48500 * 109.47099 * 60.00358 * 14 12 10 16 16 H 1.48503 * 109.46837 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.47122 * 300.00236 * 14 12 10 18 18 C 1.47444 * 110.99577 * 186.51311 * 5 4 2 19 19 H 1.09008 * 109.89135 * 117.33538 * 18 5 4 20 20 C 1.52996 * 109.89148 * 356.31242 * 18 5 4 21 21 H 1.08999 * 109.46959 * 299.99230 * 1 2 3 22 22 H 1.08997 * 109.47617 * 60.00190 * 1 2 3 23 23 H 1.09007 * 109.46585 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47323 * 240.00393 * 2 1 3 25 25 H 1.08997 * 109.46738 * 64.89838 * 3 2 1 26 26 H 1.08999 * 109.46774 * 184.89360 * 3 2 1 27 27 H 1.08994 * 109.47113 * 304.89968 * 3 2 1 28 28 H 1.08997 * 109.47067 * 305.28755 * 4 2 1 29 29 H 1.09001 * 109.46938 * 185.28553 * 4 2 1 30 30 H 1.09002 * 110.37266 * 265.18978 * 6 5 4 31 31 H 1.08999 * 110.37585 * 27.41834 * 6 5 4 32 32 H 1.09004 * 110.99204 * 81.02026 * 7 6 5 33 33 H 1.08998 * 110.98785 * 204.79654 * 7 6 5 34 34 H 0.97000 * 119.99691 * 179.97438 * 13 12 10 35 35 H 1.08998 * 109.47722 * 61.73030 * 20 18 5 36 36 H 1.08999 * 109.47271 * 181.73384 * 20 18 5 37 37 H 1.09001 * 109.46752 * 301.73110 * 20 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 1.6574 -2.1382 1.1870 6 6 2.3431 -2.8237 0.0710 7 6 2.5862 -4.2656 0.5821 8 6 2.9148 -4.0168 2.0777 9 1 3.9627 -3.7439 2.2018 10 6 2.5766 -5.2292 2.9064 11 1 1.7804 -5.1806 3.6346 12 6 3.2835 -6.4005 2.7350 13 7 4.2532 -6.4595 1.8486 14 14 2.8647 -7.9031 3.7628 15 1 1.4543 -8.2956 3.5139 16 1 3.7642 -9.0242 3.3898 17 1 3.0430 -7.5837 5.2020 18 6 1.9956 -2.8323 2.4431 19 1 1.0870 -3.2012 2.9193 20 6 2.7254 -1.8746 3.3870 21 1 -0.3633 0.5137 0.8901 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0278 0.0005 24 1 1.8934 -0.5137 -0.8900 25 1 1.7500 1.9304 0.9306 26 1 3.1264 1.4439 -0.0877 27 1 1.6067 1.9811 -0.8428 28 1 1.6015 -0.2651 2.1367 29 1 3.1260 -0.6400 1.2977 30 1 1.7071 -2.8370 -0.8142 31 1 3.2907 -2.3331 -0.1509 32 1 1.6882 -4.8743 0.4756 33 1 3.4301 -4.7251 0.0675 34 1 4.7508 -7.2834 1.7283 35 1 2.0713 -1.0383 3.6332 36 1 2.9993 -2.4028 4.3002 37 1 3.6258 -1.5004 2.8998 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259785728.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:33 Heat of formation + Delta-G solvation = -15.996188 kcal Electronic energy + Delta-G solvation = -14843.683675 eV Core-core repulsion = 12620.103014 eV Total energy + Delta-G solvation = -2223.580661 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.84583 -35.35586 -32.72681 -30.62101 -29.80141 -26.90691 -25.86873 -24.72715 -23.07619 -20.70155 -19.28179 -18.32693 -16.58332 -15.20600 -14.87980 -14.57859 -14.31211 -13.48934 -13.15097 -12.85519 -12.60252 -12.21932 -11.97911 -11.59841 -11.53333 -11.31782 -10.94819 -10.80719 -10.74143 -10.54969 -10.54068 -10.37388 -10.14248 -9.89120 -9.58026 -9.12133 -8.83655 -8.35732 -7.44406 -5.99880 -4.01965 3.33666 3.38099 3.40949 4.45262 4.70581 5.09046 5.21066 5.33221 5.42912 5.70448 5.78473 5.88221 5.92214 5.93701 6.02802 6.05289 6.08968 6.17495 6.28049 6.28180 6.33779 6.44591 6.59966 6.63322 6.75604 6.76075 6.95289 7.25213 7.28108 7.64761 7.69770 7.93173 7.96596 8.06172 8.45937 8.99618 9.61641 11.10246 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.058251 B = 0.007442 C = 0.007215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 480.563910 B = 3761.281212 C = 3879.973367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.096 4.096 3 C -0.145 4.145 4 C 0.054 3.946 5 N -0.527 5.527 6 C 0.038 3.962 7 C -0.107 4.107 8 C 0.042 3.958 9 H 0.031 0.969 10 C -0.509 4.509 11 H 0.056 0.944 12 C 0.062 3.938 13 N -0.892 5.892 14 Si 0.890 3.110 15 H -0.277 1.277 16 H -0.288 1.288 17 H -0.278 1.278 18 C 0.069 3.931 19 H 0.076 0.924 20 C -0.158 4.158 21 H 0.046 0.954 22 H 0.040 0.960 23 H 0.068 0.932 24 H 0.067 0.933 25 H 0.052 0.948 26 H 0.050 0.950 27 H 0.051 0.949 28 H 0.070 0.930 29 H 0.029 0.971 30 H 0.058 0.942 31 H 0.029 0.971 32 H 0.055 0.945 33 H 0.067 0.933 34 H 0.260 0.740 35 H 0.044 0.956 36 H 0.059 0.941 37 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.682 10.945 -2.628 11.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.115 4.115 3 C -0.203 4.203 4 C -0.074 4.074 5 N -0.250 5.250 6 C -0.089 4.089 7 C -0.145 4.145 8 C 0.023 3.977 9 H 0.049 0.951 10 C -0.547 4.547 11 H 0.074 0.926 12 C -0.139 4.139 13 N -0.530 5.530 14 Si 0.718 3.282 15 H -0.202 1.202 16 H -0.214 1.214 17 H -0.203 1.203 18 C -0.038 4.038 19 H 0.094 0.906 20 C -0.216 4.216 21 H 0.065 0.935 22 H 0.059 0.941 23 H 0.087 0.913 24 H 0.085 0.915 25 H 0.071 0.929 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.088 0.912 29 H 0.047 0.953 30 H 0.077 0.923 31 H 0.048 0.952 32 H 0.074 0.926 33 H 0.086 0.914 34 H 0.070 0.930 35 H 0.063 0.937 36 H 0.078 0.922 37 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -4.085 10.809 -2.774 11.883 hybrid contribution 0.788 -0.825 0.636 1.306 sum -3.297 9.984 -2.138 10.729 Atomic orbital electron populations 1.21692 0.94931 1.02547 1.00051 1.21152 0.96533 0.95024 0.98772 1.21818 1.00620 0.96517 1.01339 1.22360 0.97427 0.90330 0.97301 1.63724 1.56193 1.00832 1.04298 1.23111 0.95180 0.96742 0.93911 1.22632 1.00748 0.92211 0.98943 1.19844 0.94132 0.91683 0.92037 0.95105 1.21049 1.17555 0.95570 1.20559 0.92592 1.24972 0.94933 0.98705 0.95310 1.69953 1.21663 1.27192 1.34193 0.86684 0.78289 0.82490 0.80690 1.20239 1.21389 1.20333 1.22602 0.98635 0.94275 0.88303 0.90636 1.22275 0.99657 0.99072 1.00586 0.93475 0.94069 0.91340 0.91505 0.92925 0.93115 0.92978 0.91157 0.95254 0.92330 0.95221 0.92581 0.91431 0.93049 0.93716 0.92241 0.93474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.78 9.08 37.16 0.34 -1.44 16 2 C -0.10 -1.32 2.88 -90.61 -0.26 -1.58 16 3 C -0.15 -1.66 9.19 37.16 0.34 -1.32 16 4 C 0.05 0.87 3.06 -3.82 -0.01 0.86 16 5 N -0.53 -10.06 4.65 -223.35 -1.04 -11.10 16 6 C 0.04 0.75 5.55 -2.30 -0.01 0.74 16 7 C -0.11 -2.53 5.94 -24.60 -0.15 -2.67 16 8 C 0.04 1.06 2.31 -89.95 -0.21 0.85 16 9 H 0.03 0.85 7.86 -51.93 -0.41 0.44 16 10 C -0.51 -13.98 8.47 -34.44 -0.29 -14.27 16 11 H 0.06 1.52 7.53 -52.48 -0.40 1.12 16 12 C 0.06 1.74 5.36 -17.82 -0.10 1.64 16 13 N -0.89 -25.75 12.49 55.43 0.69 -25.05 16 14 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 15 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 16 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 17 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 18 C 0.07 1.47 3.60 -66.73 -0.24 1.23 16 19 H 0.08 1.70 7.63 -51.92 -0.40 1.30 16 20 C -0.16 -2.93 7.85 37.16 0.29 -2.64 16 21 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 22 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 23 H 0.07 1.02 7.76 -51.93 -0.40 0.62 16 24 H 0.07 0.97 7.18 -51.93 -0.37 0.60 16 25 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 27 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.07 1.09 6.32 -51.93 -0.33 0.77 16 29 H 0.03 0.49 6.69 -51.93 -0.35 0.15 16 30 H 0.06 1.07 8.10 -51.93 -0.42 0.65 16 31 H 0.03 0.58 7.68 -51.93 -0.40 0.18 16 32 H 0.06 1.38 8.04 -51.93 -0.42 0.97 16 33 H 0.07 1.71 7.76 -51.93 -0.40 1.30 16 34 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 35 H 0.04 0.72 6.52 -51.93 -0.34 0.39 16 36 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.05 0.86 6.79 -51.93 -0.35 0.51 16 LS Contribution 284.32 15.07 4.28 4.28 Total: -1.00 -27.75 284.32 -8.03 -35.78 By element: Atomic # 1 Polarization: 4.95 SS G_CDS: -6.65 Total: -1.70 kcal Atomic # 6 Polarization: -18.30 SS G_CDS: -0.29 Total: -18.60 kcal Atomic # 7 Polarization: -35.80 SS G_CDS: -0.35 Total: -36.15 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -27.75 -8.03 -35.78 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259785728.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.789 kcal (2) G-P(sol) polarization free energy of solvation -27.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds