Wall clock time and date at job start Mon Mar 30 2020 03:16:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53007 * 109.46672 * 2 1 4 4 C 1.53001 * 109.47419 * 120.00098 * 2 1 3 5 5 N 1.46900 * 109.46804 * 65.28594 * 4 2 1 6 6 C 1.47843 * 111.00084 * 65.67244 * 5 4 2 7 7 C 1.54904 * 104.79510 * 146.36020 * 6 5 4 8 8 C 1.55138 * 101.65680 * 322.92995 * 7 6 5 9 9 H 1.08999 * 110.70326 * 277.27450 * 8 7 6 10 10 C 1.50696 * 110.70859 * 154.03645 * 8 7 6 11 11 H 1.08003 * 120.00139 * 246.40128 * 10 8 7 12 12 C 1.37879 * 120.00205 * 66.39845 * 10 8 7 13 13 N 1.31513 * 119.99555 * 0.02562 * 12 10 8 14 14 Si 1.86797 * 120.00037 * 179.97438 * 12 10 8 15 15 H 1.48500 * 109.47099 * 60.00358 * 14 12 10 16 16 H 1.48503 * 109.46837 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.47122 * 300.00236 * 14 12 10 18 18 C 1.47444 * 110.99577 * 186.51311 * 5 4 2 19 19 H 1.09008 * 109.89135 * 117.33538 * 18 5 4 20 20 C 1.52996 * 109.89148 * 356.31242 * 18 5 4 21 21 H 1.08999 * 109.46959 * 299.99230 * 1 2 3 22 22 H 1.08997 * 109.47617 * 60.00190 * 1 2 3 23 23 H 1.09007 * 109.46585 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47323 * 240.00393 * 2 1 3 25 25 H 1.08997 * 109.46738 * 64.89838 * 3 2 1 26 26 H 1.08999 * 109.46774 * 184.89360 * 3 2 1 27 27 H 1.08994 * 109.47113 * 304.89968 * 3 2 1 28 28 H 1.08997 * 109.47067 * 305.28755 * 4 2 1 29 29 H 1.09001 * 109.46938 * 185.28553 * 4 2 1 30 30 H 1.09002 * 110.37266 * 265.18978 * 6 5 4 31 31 H 1.08999 * 110.37585 * 27.41834 * 6 5 4 32 32 H 1.09004 * 110.99204 * 81.02026 * 7 6 5 33 33 H 1.08998 * 110.98785 * 204.79654 * 7 6 5 34 34 H 0.97000 * 119.99691 * 179.97438 * 13 12 10 35 35 H 1.08998 * 109.47722 * 61.73030 * 20 18 5 36 36 H 1.08999 * 109.47271 * 181.73384 * 20 18 5 37 37 H 1.09001 * 109.46752 * 301.73110 * 20 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 1.6574 -2.1382 1.1870 6 6 2.3431 -2.8237 0.0710 7 6 2.5862 -4.2656 0.5821 8 6 2.9148 -4.0168 2.0777 9 1 3.9627 -3.7439 2.2018 10 6 2.5766 -5.2292 2.9064 11 1 1.7804 -5.1806 3.6346 12 6 3.2835 -6.4005 2.7350 13 7 4.2532 -6.4595 1.8486 14 14 2.8647 -7.9031 3.7628 15 1 1.4543 -8.2956 3.5139 16 1 3.7642 -9.0242 3.3898 17 1 3.0430 -7.5837 5.2020 18 6 1.9956 -2.8323 2.4431 19 1 1.0870 -3.2012 2.9193 20 6 2.7254 -1.8746 3.3870 21 1 -0.3633 0.5137 0.8901 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0278 0.0005 24 1 1.8934 -0.5137 -0.8900 25 1 1.7500 1.9304 0.9306 26 1 3.1264 1.4439 -0.0877 27 1 1.6067 1.9811 -0.8428 28 1 1.6015 -0.2651 2.1367 29 1 3.1260 -0.6400 1.2977 30 1 1.7071 -2.8370 -0.8142 31 1 3.2907 -2.3331 -0.1509 32 1 1.6882 -4.8743 0.4756 33 1 3.4301 -4.7251 0.0675 34 1 4.7508 -7.2834 1.7283 35 1 2.0713 -1.0383 3.6332 36 1 2.9993 -2.4028 4.3002 37 1 3.6258 -1.5004 2.8998 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259785728.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:33 Heat of formation + Delta-G solvation = -31.959221 kcal Electronic energy + Delta-G solvation = -14844.375884 eV Core-core repulsion = 12620.103014 eV Total energy + Delta-G solvation = -2224.272870 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.44332 -36.68929 -34.67200 -32.30128 -31.52681 -27.90041 -27.69179 -26.18575 -24.90642 -22.24648 -20.90023 -19.82160 -18.63042 -16.72786 -16.55956 -16.27554 -15.78629 -14.99341 -14.48171 -14.40562 -14.15294 -13.69037 -13.23834 -13.20191 -13.00082 -12.85982 -12.75164 -12.58329 -12.36497 -12.10095 -11.97626 -11.71562 -11.57333 -11.44349 -11.21105 -10.94480 -10.90394 -10.47572 -9.02038 -8.13646 -6.22743 1.41236 1.42702 1.50238 2.42953 3.17681 3.21364 3.92554 4.10706 4.16408 4.30948 4.34565 4.40304 4.53139 4.62419 4.72055 4.77071 4.81199 4.88556 4.91927 5.01413 5.08232 5.12322 5.18868 5.21592 5.32739 5.38011 5.45377 5.54503 5.59988 5.61843 5.73973 5.91021 6.24327 6.38039 6.45092 6.86188 7.44425 8.95797 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.058251 B = 0.007442 C = 0.007215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 480.563910 B = 3761.281212 C = 3879.973367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.094 4.094 3 C -0.140 4.140 4 C 0.054 3.946 5 N -0.526 5.526 6 C 0.052 3.948 7 C -0.102 4.102 8 C 0.036 3.964 9 H -0.001 1.001 10 C -0.527 4.527 11 H 0.054 0.946 12 C 0.012 3.988 13 N -0.922 5.922 14 Si 0.954 3.046 15 H -0.271 1.271 16 H -0.285 1.285 17 H -0.270 1.270 18 C 0.074 3.926 19 H 0.062 0.938 20 C -0.149 4.149 21 H 0.053 0.947 22 H 0.058 0.942 23 H 0.047 0.953 24 H 0.058 0.942 25 H 0.060 0.940 26 H 0.050 0.950 27 H 0.067 0.933 28 H 0.081 0.919 29 H 0.024 0.976 30 H 0.077 0.923 31 H 0.034 0.966 32 H 0.039 0.961 33 H 0.042 0.958 34 H 0.260 0.740 35 H 0.073 0.927 36 H 0.049 0.951 37 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.577 12.359 -2.467 13.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.113 4.113 3 C -0.198 4.198 4 C -0.074 4.074 5 N -0.250 5.250 6 C -0.075 4.075 7 C -0.141 4.141 8 C 0.017 3.983 9 H 0.018 0.982 10 C -0.565 4.565 11 H 0.072 0.928 12 C -0.186 4.186 13 N -0.561 5.561 14 Si 0.780 3.220 15 H -0.196 1.196 16 H -0.210 1.210 17 H -0.195 1.195 18 C -0.034 4.034 19 H 0.080 0.920 20 C -0.207 4.207 21 H 0.072 0.928 22 H 0.077 0.923 23 H 0.066 0.934 24 H 0.077 0.923 25 H 0.079 0.921 26 H 0.069 0.931 27 H 0.086 0.914 28 H 0.099 0.901 29 H 0.042 0.958 30 H 0.095 0.905 31 H 0.052 0.948 32 H 0.058 0.942 33 H 0.061 0.939 34 H 0.069 0.931 35 H 0.092 0.908 36 H 0.068 0.932 37 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -4.989 12.240 -2.611 13.473 hybrid contribution 1.070 -1.247 0.570 1.739 sum -3.919 10.993 -2.041 11.848 Atomic orbital electron populations 1.21649 0.94340 1.01552 1.01306 1.21141 0.96977 0.96199 0.96944 1.21772 1.00699 0.94812 1.02505 1.22481 0.97295 0.88403 0.99252 1.63726 1.56017 1.02345 1.02896 1.22965 0.95942 0.93987 0.94627 1.22440 0.98822 0.94484 0.98369 1.19795 0.93098 0.92725 0.92690 0.98244 1.21409 1.17478 0.96799 1.20842 0.92820 1.25761 0.94828 1.01619 0.96437 1.70080 1.22590 1.27872 1.35558 0.85668 0.78164 0.78883 0.79301 1.19634 1.21039 1.19527 1.22391 0.97286 0.93832 0.89867 0.91973 1.22178 0.99942 0.99204 0.99357 0.92789 0.92306 0.93420 0.92338 0.92091 0.93061 0.91442 0.90096 0.95795 0.90470 0.94782 0.94237 0.93882 0.93092 0.90779 0.93198 0.93385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.09 9.08 71.98 0.65 -2.44 16 2 C -0.09 -2.33 2.88 -10.79 -0.03 -2.36 16 3 C -0.14 -2.73 9.19 71.98 0.66 -2.07 16 4 C 0.05 1.60 3.06 86.30 0.26 1.87 16 5 N -0.53 -19.52 4.65 -860.54 -4.01 -23.52 16 6 C 0.05 2.05 5.55 86.77 0.48 2.53 16 7 C -0.10 -4.98 5.94 31.98 0.19 -4.79 16 8 C 0.04 1.86 2.31 -10.36 -0.02 1.83 16 9 H 0.00 -0.03 7.86 -2.39 -0.02 -0.05 16 10 C -0.53 -29.54 8.47 25.60 0.22 -29.32 16 11 H 0.05 2.96 7.53 -2.91 -0.02 2.93 16 12 C 0.01 0.69 5.36 84.66 0.45 1.14 16 13 N -0.92 -54.50 12.49 21.45 0.27 -54.23 16 14 Si 0.95 44.25 29.54 68.60 2.03 46.27 16 15 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 16 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 17 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 18 C 0.07 3.13 3.60 45.26 0.16 3.29 16 19 H 0.06 2.79 7.63 -2.38 -0.02 2.77 16 20 C -0.15 -5.36 7.85 71.98 0.57 -4.80 16 21 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 22 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 23 H 0.05 1.32 7.76 -2.38 -0.02 1.30 16 24 H 0.06 1.56 7.18 -2.39 -0.02 1.54 16 25 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 26 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.08 2.27 6.32 -2.39 -0.02 2.25 16 29 H 0.02 0.76 6.69 -2.39 -0.02 0.74 16 30 H 0.08 2.74 8.10 -2.39 -0.02 2.72 16 31 H 0.03 1.30 7.68 -2.39 -0.02 1.28 16 32 H 0.04 2.00 8.04 -2.38 -0.02 1.98 16 33 H 0.04 2.26 7.76 -2.39 -0.02 2.24 16 34 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 35 H 0.07 2.22 6.52 -2.39 -0.02 2.20 16 36 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.05 1.70 6.79 -2.39 -0.02 1.69 16 Total: -1.00 -59.86 284.32 2.88 -56.97 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: 1.00 Total: 9.62 kcal Atomic # 6 Polarization: -38.70 SS G_CDS: 3.60 Total: -35.11 kcal Atomic # 7 Polarization: -74.02 SS G_CDS: -3.74 Total: -77.76 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.27 kcal Total: -59.86 2.88 -56.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259785728.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.014 kcal (2) G-P(sol) polarization free energy of solvation -59.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds