Wall clock time and date at job start Mon Mar 30 2020 03:33:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.46866 * 2 1 4 4 C 1.53004 * 109.46914 * 120.00070 * 2 1 3 5 5 C 1.50699 * 109.46843 * 295.00026 * 4 2 1 6 6 H 1.08002 * 120.00516 * 359.97438 * 5 4 2 7 7 C 1.37884 * 119.99783 * 180.02562 * 5 4 2 8 8 N 1.31514 * 119.99707 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 119.99956 * 180.27458 * 7 5 4 10 10 H 1.48497 * 109.47172 * 179.72730 * 9 7 5 11 11 H 1.48506 * 109.47132 * 299.72429 * 9 7 5 12 12 H 1.48501 * 109.47173 * 59.72550 * 9 7 5 13 13 C 1.52999 * 109.47141 * 240.00071 * 2 1 3 14 14 H 1.09000 * 109.50198 * 299.99590 * 13 2 1 15 15 C 1.53114 * 109.50433 * 60.07901 * 13 2 1 16 16 C 1.53126 * 109.16020 * 177.59758 * 15 13 2 17 17 C 1.53041 * 109.27273 * 302.34167 * 16 15 13 18 18 N 1.46844 * 109.52291 * 59.18255 * 17 16 15 19 19 C 1.46900 * 110.99781 * 174.15337 * 18 17 16 20 20 C 1.46841 * 111.23130 * 298.27306 * 18 17 16 21 21 H 1.08998 * 109.47348 * 299.99780 * 1 2 3 22 22 H 1.09001 * 109.47203 * 60.00346 * 1 2 3 23 23 H 1.09006 * 109.47197 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46361 * 175.00368 * 4 2 1 25 25 H 1.08997 * 109.46991 * 55.00258 * 4 2 1 26 26 H 0.97005 * 119.99656 * 179.97438 * 8 7 5 27 27 H 1.09002 * 109.52277 * 297.49722 * 15 13 2 28 28 H 1.08992 * 109.52530 * 57.62648 * 15 13 2 29 29 H 1.08996 * 109.50514 * 62.28744 * 16 15 13 30 30 H 1.09005 * 109.50072 * 182.36425 * 16 15 13 31 31 H 1.09000 * 109.45870 * 179.19618 * 17 16 15 32 32 H 1.08994 * 109.46450 * 299.16069 * 17 16 15 33 33 H 1.08996 * 109.47045 * 63.95823 * 19 18 17 34 34 H 1.09004 * 109.46919 * 183.95490 * 19 18 17 35 35 H 1.08995 * 109.47576 * 303.95307 * 19 18 17 36 36 H 1.08989 * 109.43356 * 301.68352 * 20 18 17 37 37 H 1.09004 * 109.49322 * 181.71540 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 1.6412 0.0570 2.4766 6 1 1.0806 0.9746 2.3757 7 6 1.9931 -0.4017 3.7283 8 7 2.6771 -1.5183 3.8511 9 14 1.4923 0.5590 5.2500 10 1 1.9831 -0.1435 6.4627 11 1 2.0836 1.9200 5.1930 12 1 0.0120 0.6642 5.3040 13 6 2.0400 -0.7212 -1.2492 14 1 1.6770 -1.7490 -1.2497 15 6 1.5317 0.0011 -2.4999 16 6 2.0953 -0.6910 -3.7441 17 6 3.6241 -0.6896 -3.6739 18 7 4.0603 -1.3927 -2.4607 19 6 5.5224 -1.5321 -2.4301 20 6 3.5704 -0.7199 -1.2510 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 3.1263 -0.7994 1.2056 25 1 1.6053 -1.7198 1.2951 26 1 2.9250 -1.8408 4.7317 27 1 0.4425 -0.0358 -2.5246 28 1 1.8605 1.0401 -2.4795 29 1 1.7337 -1.7185 -3.7842 30 1 1.7709 -0.1559 -4.6366 31 1 4.0284 -1.1944 -4.5514 32 1 3.9856 0.3383 -3.6478 33 1 5.9804 -0.5447 -2.3747 34 1 5.8133 -2.1170 -1.5575 35 1 5.8582 -2.0383 -3.3351 36 1 3.9327 0.3079 -1.2357 37 1 3.9350 -1.2465 -0.3690 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260498886.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:15 Heat of formation + Delta-G solvation = -27.832436 kcal Electronic energy + Delta-G solvation = -14676.567926 eV Core-core repulsion = 12452.474006 eV Total energy + Delta-G solvation = -2224.093920 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.99212 -35.46320 -32.96819 -31.91116 -29.24023 -27.26823 -26.09517 -23.94955 -22.61471 -21.79207 -19.53340 -18.83379 -16.37883 -15.38447 -14.95862 -14.50808 -14.31842 -13.87379 -13.33624 -12.99639 -12.86375 -12.44185 -12.23817 -11.87077 -11.66684 -11.31536 -11.05207 -10.88251 -10.80365 -10.68238 -10.49271 -10.24848 -10.08488 -9.80848 -9.54037 -8.91010 -8.82299 -8.27406 -8.05626 -5.93885 -3.94882 3.35785 3.40351 3.42662 4.20419 4.50275 5.07932 5.14753 5.22816 5.41061 5.43861 5.58414 5.62939 5.75270 5.78438 5.91669 6.02550 6.05370 6.09436 6.18018 6.18928 6.34799 6.38753 6.43301 6.64808 6.67930 6.77228 7.11850 7.17499 7.27089 7.37084 7.40380 7.75700 7.92256 8.07357 8.51165 9.11584 9.68015 11.17303 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.041799 B = 0.007618 C = 0.006719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.715344 B = 3674.449951 C = 4166.532054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.081 4.081 3 H 0.052 0.948 4 C 0.027 3.973 5 C -0.515 4.515 6 H 0.054 0.946 7 C 0.056 3.944 8 N -0.896 5.896 9 Si 0.888 3.112 10 H -0.288 1.288 11 H -0.278 1.278 12 H -0.278 1.278 13 C -0.076 4.076 14 H 0.072 0.928 15 C -0.118 4.118 16 C -0.116 4.116 17 C 0.057 3.943 18 N -0.545 5.545 19 C 0.026 3.974 20 C 0.061 3.939 21 H 0.059 0.941 22 H 0.032 0.968 23 H 0.044 0.956 24 H 0.018 0.982 25 H 0.015 0.985 26 H 0.259 0.741 27 H 0.064 0.936 28 H 0.053 0.947 29 H 0.068 0.932 30 H 0.059 0.941 31 H 0.066 0.934 32 H 0.027 0.973 33 H 0.021 0.979 34 H 0.069 0.931 35 H 0.061 0.939 36 H 0.028 0.972 37 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.111 1.676 -13.250 13.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.100 4.100 3 H 0.071 0.929 4 C -0.010 4.010 5 C -0.553 4.553 6 H 0.072 0.928 7 C -0.145 4.145 8 N -0.536 5.536 9 Si 0.716 3.284 10 H -0.214 1.214 11 H -0.204 1.204 12 H -0.203 1.203 13 C -0.095 4.095 14 H 0.090 0.910 15 C -0.155 4.155 16 C -0.154 4.154 17 C -0.072 4.072 18 N -0.270 5.270 19 C -0.122 4.122 20 C -0.066 4.066 21 H 0.078 0.922 22 H 0.051 0.949 23 H 0.063 0.937 24 H 0.036 0.964 25 H 0.034 0.966 26 H 0.069 0.931 27 H 0.083 0.917 28 H 0.072 0.928 29 H 0.087 0.913 30 H 0.078 0.922 31 H 0.085 0.915 32 H 0.045 0.955 33 H 0.039 0.961 34 H 0.088 0.912 35 H 0.080 0.920 36 H 0.046 0.954 37 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 0.993 1.085 -13.127 13.209 hybrid contribution 0.197 1.306 0.981 1.645 sum 1.190 2.392 -12.146 12.436 Atomic orbital electron populations 1.21744 0.96385 1.00770 1.00050 1.21206 0.95026 0.98926 0.94872 0.92912 1.19184 0.96170 0.95405 0.90232 1.21254 1.34628 1.08252 0.91202 0.92786 1.25012 0.95391 0.95082 0.98996 1.69958 1.39030 1.21177 1.23403 0.86726 0.78904 0.80093 0.82665 1.21377 1.20389 1.20319 1.21241 0.93645 1.00139 0.94504 0.90987 1.21713 1.00372 0.98910 0.94522 1.21591 0.94564 1.01389 0.97857 1.22058 0.96217 0.96050 0.92837 1.61931 1.10636 1.51709 1.02698 1.22321 0.87700 0.99793 1.02375 1.22267 0.96054 0.96411 0.91914 0.92199 0.94859 0.93694 0.96391 0.96621 0.93086 0.91729 0.92778 0.91344 0.92247 0.91546 0.95468 0.96085 0.91188 0.91973 0.95410 0.89450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.53 8.65 37.16 0.32 -2.21 16 2 C -0.08 -1.67 1.92 -90.62 -0.17 -1.85 16 3 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 4 C 0.03 0.69 4.23 -27.88 -0.12 0.57 16 5 C -0.52 -14.50 8.41 -34.44 -0.29 -14.79 16 6 H 0.05 1.48 7.06 -52.49 -0.37 1.11 16 7 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 8 N -0.90 -27.07 13.29 55.43 0.74 -26.33 16 9 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 10 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 11 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 12 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 13 C -0.08 -1.36 1.93 -90.54 -0.18 -1.53 16 14 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 15 C -0.12 -1.74 4.86 -26.61 -0.13 -1.87 16 16 C -0.12 -1.50 6.09 -26.64 -0.16 -1.66 16 17 C 0.06 0.75 5.47 -3.83 -0.02 0.73 16 18 N -0.55 -8.45 4.91 -242.97 -1.19 -9.64 16 19 C 0.03 0.35 9.59 60.06 0.58 0.93 16 20 C 0.06 1.07 4.38 -3.84 -0.02 1.06 16 21 H 0.06 1.23 6.95 -51.93 -0.36 0.86 16 22 H 0.03 0.54 6.49 -51.93 -0.34 0.20 16 23 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 24 H 0.02 0.48 6.20 -51.93 -0.32 0.16 16 25 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 27 H 0.06 0.92 6.58 -51.93 -0.34 0.57 16 28 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.77 8.09 -51.93 -0.42 0.35 16 32 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 34 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 35 H 0.06 0.70 8.10 -51.93 -0.42 0.28 16 36 H 0.03 0.50 8.14 -51.94 -0.42 0.07 16 37 H 0.09 1.74 6.35 -51.93 -0.33 1.41 16 LS Contribution 283.73 15.07 4.28 4.28 Total: -1.00 -29.48 283.73 -8.18 -37.65 By element: Atomic # 1 Polarization: 3.03 SS G_CDS: -6.69 Total: -3.66 kcal Atomic # 6 Polarization: -18.82 SS G_CDS: -0.29 Total: -19.11 kcal Atomic # 7 Polarization: -35.52 SS G_CDS: -0.46 Total: -35.98 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -29.48 -8.18 -37.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260498886.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.821 kcal (2) G-P(sol) polarization free energy of solvation -29.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds