Wall clock time and date at job start Mon Mar 30 2020 03:33:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.46866 * 2 1 4 4 C 1.53004 * 109.46914 * 120.00070 * 2 1 3 5 5 C 1.50699 * 109.46843 * 295.00026 * 4 2 1 6 6 H 1.08002 * 120.00516 * 359.97438 * 5 4 2 7 7 C 1.37884 * 119.99783 * 180.02562 * 5 4 2 8 8 N 1.31514 * 119.99707 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 119.99956 * 180.27458 * 7 5 4 10 10 H 1.48497 * 109.47172 * 179.72730 * 9 7 5 11 11 H 1.48506 * 109.47132 * 299.72429 * 9 7 5 12 12 H 1.48501 * 109.47173 * 59.72550 * 9 7 5 13 13 C 1.52999 * 109.47141 * 240.00071 * 2 1 3 14 14 H 1.09000 * 109.50198 * 299.99590 * 13 2 1 15 15 C 1.53114 * 109.50433 * 60.07901 * 13 2 1 16 16 C 1.53126 * 109.16020 * 177.59758 * 15 13 2 17 17 C 1.53041 * 109.27273 * 302.34167 * 16 15 13 18 18 N 1.46844 * 109.52291 * 59.18255 * 17 16 15 19 19 C 1.46900 * 110.99781 * 174.15337 * 18 17 16 20 20 C 1.46841 * 111.23130 * 298.27306 * 18 17 16 21 21 H 1.08998 * 109.47348 * 299.99780 * 1 2 3 22 22 H 1.09001 * 109.47203 * 60.00346 * 1 2 3 23 23 H 1.09006 * 109.47197 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46361 * 175.00368 * 4 2 1 25 25 H 1.08997 * 109.46991 * 55.00258 * 4 2 1 26 26 H 0.97005 * 119.99656 * 179.97438 * 8 7 5 27 27 H 1.09002 * 109.52277 * 297.49722 * 15 13 2 28 28 H 1.08992 * 109.52530 * 57.62648 * 15 13 2 29 29 H 1.08996 * 109.50514 * 62.28744 * 16 15 13 30 30 H 1.09005 * 109.50072 * 182.36425 * 16 15 13 31 31 H 1.09000 * 109.45870 * 179.19618 * 17 16 15 32 32 H 1.08994 * 109.46450 * 299.16069 * 17 16 15 33 33 H 1.08996 * 109.47045 * 63.95823 * 19 18 17 34 34 H 1.09004 * 109.46919 * 183.95490 * 19 18 17 35 35 H 1.08995 * 109.47576 * 303.95307 * 19 18 17 36 36 H 1.08989 * 109.43356 * 301.68352 * 20 18 17 37 37 H 1.09004 * 109.49322 * 181.71540 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 1.6412 0.0570 2.4766 6 1 1.0806 0.9746 2.3757 7 6 1.9931 -0.4017 3.7283 8 7 2.6771 -1.5183 3.8511 9 14 1.4923 0.5590 5.2500 10 1 1.9831 -0.1435 6.4627 11 1 2.0836 1.9200 5.1930 12 1 0.0120 0.6642 5.3040 13 6 2.0400 -0.7212 -1.2492 14 1 1.6770 -1.7490 -1.2497 15 6 1.5317 0.0011 -2.4999 16 6 2.0953 -0.6910 -3.7441 17 6 3.6241 -0.6896 -3.6739 18 7 4.0603 -1.3927 -2.4607 19 6 5.5224 -1.5321 -2.4301 20 6 3.5704 -0.7199 -1.2510 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 3.1263 -0.7994 1.2056 25 1 1.6053 -1.7198 1.2951 26 1 2.9250 -1.8408 4.7317 27 1 0.4425 -0.0358 -2.5246 28 1 1.8605 1.0401 -2.4795 29 1 1.7337 -1.7185 -3.7842 30 1 1.7709 -0.1559 -4.6366 31 1 4.0284 -1.1944 -4.5514 32 1 3.9856 0.3383 -3.6478 33 1 5.9804 -0.5447 -2.3747 34 1 5.8133 -2.1170 -1.5575 35 1 5.8582 -2.0383 -3.3351 36 1 3.9327 0.3079 -1.2357 37 1 3.9350 -1.2465 -0.3690 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260498886.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:14 Heat of formation + Delta-G solvation = -45.810389 kcal Electronic energy + Delta-G solvation = -14677.347508 eV Core-core repulsion = 12452.474006 eV Total energy + Delta-G solvation = -2224.873502 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.30508 -37.04179 -34.75512 -33.44615 -30.73886 -29.04720 -27.39671 -25.72100 -23.98510 -23.25817 -20.84855 -20.45189 -18.48989 -16.70796 -16.56267 -16.19970 -15.55401 -15.06802 -14.90062 -14.57748 -14.40927 -13.98936 -13.56286 -13.36996 -13.16174 -12.88281 -12.75404 -12.59709 -12.37128 -12.17504 -12.01972 -11.75606 -11.58179 -11.44858 -11.21148 -10.78088 -10.59152 -10.45982 -9.26050 -8.15742 -6.25063 1.39182 1.41969 1.49648 2.42340 3.02441 3.16964 3.88579 3.97993 3.99320 4.20768 4.40983 4.47795 4.51339 4.55847 4.59093 4.70980 4.76860 4.85386 4.88834 4.97926 5.02090 5.08212 5.11835 5.18831 5.30552 5.31583 5.47345 5.51995 5.54078 5.65960 5.87694 5.92977 6.12481 6.23342 6.33240 6.91683 7.42771 8.95743 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.041799 B = 0.007618 C = 0.006719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.715344 B = 3674.449951 C = 4166.532054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.074 4.074 3 H 0.049 0.951 4 C 0.034 3.966 5 C -0.532 4.532 6 H 0.060 0.940 7 C -0.002 4.002 8 N -0.935 5.935 9 Si 0.959 3.041 10 H -0.285 1.285 11 H -0.268 1.268 12 H -0.267 1.267 13 C -0.071 4.071 14 H 0.056 0.944 15 C -0.112 4.112 16 C -0.112 4.112 17 C 0.053 3.947 18 N -0.558 5.558 19 C 0.025 3.975 20 C 0.069 3.931 21 H 0.042 0.958 22 H 0.069 0.931 23 H 0.040 0.960 24 H -0.007 1.007 25 H -0.017 1.017 26 H 0.261 0.739 27 H 0.075 0.925 28 H 0.058 0.942 29 H 0.064 0.936 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.030 0.970 33 H 0.024 0.976 34 H 0.057 0.943 35 H 0.087 0.913 36 H 0.023 0.977 37 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.407 2.918 -14.783 15.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.093 4.093 3 H 0.068 0.932 4 C -0.003 4.003 5 C -0.570 4.570 6 H 0.078 0.922 7 C -0.199 4.199 8 N -0.576 5.576 9 Si 0.784 3.216 10 H -0.210 1.210 11 H -0.193 1.193 12 H -0.192 1.192 13 C -0.089 4.089 14 H 0.075 0.925 15 C -0.150 4.150 16 C -0.150 4.150 17 C -0.074 4.074 18 N -0.283 5.283 19 C -0.123 4.123 20 C -0.059 4.059 21 H 0.061 0.939 22 H 0.088 0.912 23 H 0.059 0.941 24 H 0.011 0.989 25 H 0.002 0.998 26 H 0.070 0.930 27 H 0.094 0.906 28 H 0.076 0.924 29 H 0.083 0.917 30 H 0.108 0.892 31 H 0.108 0.892 32 H 0.048 0.952 33 H 0.043 0.957 34 H 0.076 0.924 35 H 0.106 0.894 36 H 0.041 0.959 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 0.285 2.335 -14.679 14.867 hybrid contribution 0.460 0.880 1.434 1.744 sum 0.746 3.215 -13.246 13.651 Atomic orbital electron populations 1.21675 0.94886 1.00790 1.00986 1.21070 0.96243 0.98152 0.93866 0.93225 1.19053 0.94490 0.94179 0.92546 1.21684 1.34449 1.08579 0.92322 0.92221 1.25949 0.95314 0.96086 1.02598 1.70107 1.40268 1.22940 1.24236 0.85592 0.78960 0.78764 0.78288 1.21024 1.19311 1.19207 1.21119 0.93623 0.99296 0.94909 0.92548 1.21668 1.01035 0.98761 0.93504 1.21594 0.94101 1.01370 0.97899 1.22198 0.96677 0.96271 0.92265 1.61923 1.11929 1.51841 1.02572 1.22376 0.86574 1.00135 1.03172 1.22026 0.96126 0.95703 0.92083 0.93894 0.91202 0.94129 0.98875 0.99822 0.93015 0.90616 0.92361 0.91695 0.89192 0.89209 0.95181 0.95709 0.92393 0.89386 0.95913 0.93051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.72 8.65 71.98 0.62 -4.10 16 2 C -0.07 -3.09 1.92 -10.79 -0.02 -3.11 16 3 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 4 C 0.03 1.84 4.23 29.85 0.13 1.97 16 5 C -0.53 -30.64 8.41 25.60 0.22 -30.42 16 6 H 0.06 3.29 7.06 -2.91 -0.02 3.27 16 7 C 0.00 -0.13 5.46 84.66 0.46 0.33 16 8 N -0.93 -58.16 13.29 21.45 0.28 -57.88 16 9 Si 0.96 45.09 29.54 68.60 2.03 47.12 16 10 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 11 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 12 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 13 C -0.07 -2.50 1.93 -10.74 -0.02 -2.53 16 14 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 15 C -0.11 -3.04 4.86 30.67 0.15 -2.89 16 16 C -0.11 -2.53 6.09 30.65 0.19 -2.34 16 17 C 0.05 1.27 5.47 86.33 0.47 1.74 16 18 N -0.56 -16.82 4.91 -922.63 -4.53 -21.34 16 19 C 0.03 0.65 9.59 127.69 1.22 1.88 16 20 C 0.07 2.48 4.38 86.33 0.38 2.86 16 21 H 0.04 1.73 6.95 -2.39 -0.02 1.71 16 22 H 0.07 2.09 6.49 -2.39 -0.02 2.08 16 23 H 0.04 1.52 8.14 -2.38 -0.02 1.50 16 24 H -0.01 -0.41 6.20 -2.39 -0.01 -0.42 16 25 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 26 H 0.26 15.34 8.31 -92.70 -0.77 14.57 16 27 H 0.08 1.89 6.58 -2.39 -0.02 1.88 16 28 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.09 1.54 8.14 -2.38 -0.02 1.52 16 31 H 0.09 1.75 8.09 -2.39 -0.02 1.73 16 32 H 0.03 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.02 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.09 1.80 8.10 -2.39 -0.02 1.78 16 36 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.05 2.19 6.35 -2.39 -0.02 2.18 16 Total: -1.00 -64.74 283.73 2.58 -62.16 By element: Atomic # 1 Polarization: 5.56 SS G_CDS: 1.00 Total: 6.56 kcal Atomic # 6 Polarization: -40.41 SS G_CDS: 3.80 Total: -36.62 kcal Atomic # 7 Polarization: -74.98 SS G_CDS: -4.24 Total: -79.22 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Total: -64.74 2.58 -62.16 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260498886.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.352 kcal (2) G-P(sol) polarization free energy of solvation -64.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds