Wall clock time and date at job start Mon Mar 30 2020 03:33:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47180 * 2 1 4 4 C 1.53003 * 109.47362 * 240.00208 * 2 1 3 5 5 C 1.50703 * 109.46906 * 65.29745 * 4 2 1 6 6 H 1.08000 * 120.00116 * 359.97438 * 5 4 2 7 7 C 1.37879 * 119.99780 * 180.02562 * 5 4 2 8 8 N 1.31511 * 119.99609 * 179.97438 * 7 5 4 9 9 Si 1.86795 * 119.99952 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.47522 * 89.99830 * 9 7 5 11 11 H 1.48504 * 109.46812 * 209.99560 * 9 7 5 12 12 H 1.48496 * 109.47259 * 329.99736 * 9 7 5 13 13 C 1.52998 * 109.47330 * 120.00209 * 2 1 3 14 14 H 1.08998 * 108.74104 * 67.11004 * 13 2 1 15 15 C 1.54176 * 108.85255 * 308.66034 * 13 2 1 16 16 C 1.53868 * 112.00336 * 197.64721 * 15 13 2 17 17 C 1.50819 * 111.59605 * 319.11168 * 16 15 13 18 18 N 1.47634 * 108.08884 * 94.99946 * 17 16 15 19 19 C 1.39780 * 114.76511 * 277.18193 * 18 17 16 20 20 C 1.50751 * 108.85870 * 185.57248 * 13 2 1 21 21 H 1.08996 * 109.47160 * 179.97438 * 1 2 3 22 22 H 1.08994 * 109.47222 * 299.99660 * 1 2 3 23 23 H 1.09006 * 109.46825 * 60.00079 * 1 2 3 24 24 H 1.08998 * 109.47228 * 185.29661 * 4 2 1 25 25 H 1.09005 * 109.47013 * 305.29781 * 4 2 1 26 26 H 0.97004 * 119.99961 * 180.02562 * 8 7 5 27 27 H 1.09002 * 108.97595 * 318.31351 * 15 13 2 28 28 H 1.08992 * 108.98057 * 77.03406 * 15 13 2 29 29 H 1.08994 * 109.12531 * 198.52257 * 16 15 13 30 30 H 1.09002 * 109.00042 * 79.61320 * 16 15 13 31 31 H 1.09000 * 109.74354 * 335.34198 * 17 16 15 32 32 H 1.08997 * 109.74783 * 214.66102 * 17 16 15 33 33 H 1.00903 * 110.99915 * 44.03541 * 18 17 16 34 34 H 1.09001 * 109.01893 * 182.86829 * 19 18 17 35 35 H 1.09007 * 109.01438 * 301.75806 * 19 18 17 36 36 H 1.08996 * 109.54451 * 93.96134 * 20 13 2 37 37 H 1.09003 * 109.61740 * 333.72968 * 20 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 1.6477 0.0610 -2.4762 6 1 1.0899 0.9803 -2.3751 7 6 1.9999 -0.3976 -3.7279 8 7 1.6570 0.2848 -4.7986 9 14 2.9627 -1.9887 -3.9029 10 1 2.0182 -3.1282 -4.0238 11 1 3.8144 -1.9208 -5.1175 12 1 3.8210 -2.1820 -2.7066 13 6 2.0400 -0.7213 1.2492 14 1 1.7783 -1.7768 1.1755 15 6 1.3468 -0.1214 2.4888 16 6 2.0936 -0.4647 3.7895 17 6 2.5818 -1.8917 3.7893 18 7 3.9811 -1.8973 3.3185 19 6 4.1315 -1.8783 1.9290 20 6 3.5411 -0.5943 1.3064 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5137 0.8900 23 1 -0.3633 0.5139 -0.8901 24 1 3.1259 -0.8041 -1.2031 25 1 1.6013 -1.7179 -1.2980 26 1 1.9045 -0.0380 -5.6793 27 1 1.3027 0.9623 2.3805 28 1 0.3310 -0.5117 2.5505 29 1 1.4225 -0.3184 4.6358 30 1 2.9481 0.2037 3.8951 31 1 1.9656 -2.4916 3.1196 32 1 2.5315 -2.2983 4.7993 33 1 4.5107 -1.1545 3.7497 34 1 5.1925 -1.9358 1.6857 35 1 3.6226 -2.7440 1.5048 36 1 3.8112 0.2656 1.9192 37 1 3.9359 -0.4627 0.2989 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260630208.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:21 Heat of formation + Delta-G solvation = -27.071374 kcal Electronic energy + Delta-G solvation = -14866.963534 eV Core-core repulsion = 12642.902616 eV Total energy + Delta-G solvation = -2224.060918 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.42885 -35.80735 -32.85713 -32.19853 -30.43667 -27.72730 -25.30663 -24.64238 -22.65109 -21.47536 -19.71483 -18.60596 -16.85510 -16.04939 -15.01102 -14.70083 -14.48096 -14.03137 -13.53064 -13.38025 -12.85030 -12.51503 -12.16888 -11.92085 -11.71397 -11.34312 -11.17256 -11.00867 -10.82722 -10.74165 -10.63383 -10.16386 -10.05951 -9.66392 -9.60214 -9.19024 -8.99047 -8.49708 -8.13622 -6.00979 -3.97467 3.32288 3.39844 3.43615 4.42486 4.47992 4.82605 5.07423 5.11719 5.21253 5.33095 5.42736 5.49403 5.62023 5.80381 5.85396 5.92642 5.98102 6.08368 6.13332 6.18219 6.28152 6.33443 6.41707 6.52649 6.62350 6.69563 6.92163 7.02908 7.11869 7.33052 7.38782 7.52353 7.59469 7.85193 8.58916 9.04805 9.62356 11.12591 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.040019 B = 0.008710 C = 0.007561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.493683 B = 3213.779618 C = 3702.238648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.074 4.074 3 H 0.059 0.941 4 C -0.009 4.009 5 C -0.514 4.514 6 H 0.072 0.928 7 C 0.064 3.936 8 N -0.906 5.906 9 Si 0.877 3.123 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.265 1.265 13 C -0.083 4.083 14 H 0.060 0.940 15 C -0.111 4.111 16 C -0.151 4.151 17 C 0.066 3.934 18 N -0.700 5.700 19 C 0.072 3.928 20 C -0.161 4.161 21 H 0.041 0.959 22 H 0.035 0.965 23 H 0.063 0.937 24 H 0.019 0.981 25 H 0.008 0.992 26 H 0.262 0.738 27 H 0.057 0.943 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.339 0.661 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.054 0.946 37 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.292 -3.090 15.969 16.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.092 4.092 3 H 0.077 0.923 4 C -0.046 4.046 5 C -0.552 4.552 6 H 0.090 0.910 7 C -0.136 4.136 8 N -0.546 5.546 9 Si 0.705 3.295 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.190 1.190 13 C -0.101 4.101 14 H 0.078 0.922 15 C -0.149 4.149 16 C -0.190 4.190 17 C -0.063 4.063 18 N -0.330 5.330 19 C -0.060 4.060 20 C -0.201 4.201 21 H 0.061 0.939 22 H 0.054 0.946 23 H 0.082 0.918 24 H 0.037 0.963 25 H 0.026 0.974 26 H 0.071 0.929 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.092 0.908 32 H 0.087 0.913 33 H 0.159 0.841 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.073 0.927 37 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 2.325 -3.765 15.776 16.385 hybrid contribution 0.182 0.180 -0.553 0.609 sum 2.507 -3.585 15.223 15.839 Atomic orbital electron populations 1.21784 0.96273 1.00662 1.00592 1.21115 0.95124 0.99119 0.93853 0.92289 1.19690 0.95982 0.95607 0.93371 1.21183 1.35372 1.09331 0.89281 0.91018 1.25035 0.95681 0.96939 0.95965 1.69919 1.47358 1.39275 0.98011 0.86812 0.80645 0.84386 0.77663 1.20439 1.21519 1.18951 1.21106 0.94382 0.99930 0.94697 0.92152 1.22016 0.98839 1.00691 0.93335 1.22148 1.00648 0.97951 0.98286 1.21723 0.88457 0.95706 1.00381 1.57713 1.12590 1.53361 1.09319 1.20968 1.00583 0.97140 0.87272 1.22459 0.96373 0.98485 1.02754 0.93937 0.94624 0.91793 0.96336 0.97355 0.92869 0.92383 0.92240 0.92316 0.92356 0.90772 0.91295 0.84133 0.91571 0.91504 0.92694 0.90115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.55 8.46 37.16 0.31 -2.24 16 2 C -0.07 -1.44 1.77 -90.62 -0.16 -1.60 16 3 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 4 C -0.01 -0.22 3.37 -27.88 -0.09 -0.32 16 5 C -0.51 -14.60 8.96 -34.44 -0.31 -14.91 16 6 H 0.07 2.19 7.32 -52.49 -0.38 1.81 16 7 C 0.06 1.89 5.47 -17.82 -0.10 1.79 16 8 N -0.91 -28.20 13.96 55.43 0.77 -27.43 16 9 Si 0.88 22.01 27.47 -169.99 -4.67 17.34 16 10 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 12 H -0.26 -6.36 6.54 56.52 0.37 -5.99 16 13 C -0.08 -1.32 1.32 -91.13 -0.12 -1.44 16 14 H 0.06 1.00 6.56 -51.93 -0.34 0.66 16 15 C -0.11 -1.49 4.05 -25.66 -0.10 -1.60 16 16 C -0.15 -1.69 5.39 -27.37 -0.15 -1.84 16 17 C 0.07 0.74 6.28 -4.51 -0.03 0.71 16 18 N -0.70 -8.38 6.38 -118.54 -0.76 -9.14 16 19 C 0.07 0.97 6.00 -6.75 -0.04 0.93 16 20 C -0.16 -2.44 5.01 -27.11 -0.14 -2.58 16 21 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 22 H 0.03 0.57 6.60 -51.93 -0.34 0.22 16 23 H 0.06 1.35 6.97 -51.93 -0.36 0.99 16 24 H 0.02 0.44 5.18 -51.93 -0.27 0.17 16 25 H 0.01 0.20 7.57 -51.93 -0.39 -0.20 16 26 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 27 H 0.06 0.80 7.93 -51.93 -0.41 0.39 16 28 H 0.06 0.78 7.36 -51.93 -0.38 0.40 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.64 6.78 -51.93 -0.35 0.29 16 31 H 0.07 0.92 6.66 -51.93 -0.35 0.58 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.34 3.61 8.10 -39.29 -0.32 3.29 16 34 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.07 0.98 7.54 -51.93 -0.39 0.59 16 36 H 0.05 0.78 7.11 -51.93 -0.37 0.41 16 37 H 0.08 1.41 5.75 -51.93 -0.30 1.11 16 LS Contribution 271.10 15.07 4.09 4.09 Total: -1.00 -29.76 271.10 -7.73 -37.49 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: -6.24 Total: 0.73 kcal Atomic # 6 Polarization: -22.15 SS G_CDS: -0.92 Total: -23.07 kcal Atomic # 7 Polarization: -36.59 SS G_CDS: 0.02 Total: -36.57 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.67 Total: 17.34 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -29.76 -7.73 -37.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260630208.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.419 kcal (2) G-P(sol) polarization free energy of solvation -29.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds