Wall clock time and date at job start Mon Mar 30 2020 03:33:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.46910 * 2 1 4 4 C 1.52998 * 109.47472 * 120.00387 * 2 1 3 5 5 C 1.50701 * 109.46791 * 294.99986 * 4 2 1 6 6 H 1.07993 * 120.00044 * 359.97438 * 5 4 2 7 7 C 1.37884 * 119.99285 * 179.97438 * 5 4 2 8 8 N 1.31505 * 120.00300 * 0.02562 * 7 5 4 9 9 Si 1.86807 * 119.99428 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.46980 * 90.00060 * 9 7 5 11 11 H 1.48494 * 109.47065 * 210.00095 * 9 7 5 12 12 H 1.48497 * 109.47267 * 330.00539 * 9 7 5 13 13 C 1.53003 * 109.46712 * 240.00433 * 2 1 3 14 14 H 1.08996 * 108.82874 * 304.96159 * 13 2 1 15 15 C 1.54173 * 108.84904 * 186.55173 * 13 2 1 16 16 C 1.53830 * 111.96557 * 197.68125 * 15 13 2 17 17 C 1.50814 * 111.62349 * 319.04491 * 16 15 13 18 18 N 1.47632 * 108.05398 * 95.05403 * 17 16 15 19 19 C 1.39770 * 114.76041 * 277.20192 * 18 17 16 20 20 C 1.50749 * 108.85321 * 63.46768 * 13 2 1 21 21 H 1.09000 * 109.46532 * 294.25914 * 1 2 3 22 22 H 1.08997 * 109.46955 * 54.25916 * 1 2 3 23 23 H 1.08996 * 109.47108 * 174.26613 * 1 2 3 24 24 H 1.09001 * 109.46970 * 54.99926 * 4 2 1 25 25 H 1.09000 * 109.47142 * 174.99935 * 4 2 1 26 26 H 0.97003 * 119.99893 * 179.97438 * 8 7 5 27 27 H 1.08994 * 108.98876 * 318.32088 * 15 13 2 28 28 H 1.09000 * 108.98064 * 77.04611 * 15 13 2 29 29 H 1.09000 * 109.04970 * 79.59262 * 16 15 13 30 30 H 1.08994 * 109.04976 * 198.49480 * 16 15 13 31 31 H 1.08998 * 109.74705 * 335.41755 * 17 16 15 32 32 H 1.09001 * 109.74568 * 214.69539 * 17 16 15 33 33 H 1.00904 * 110.99776 * 150.34961 * 18 17 16 34 34 H 1.09007 * 109.02374 * 182.86439 * 19 18 17 35 35 H 1.09006 * 109.02348 * 301.75654 * 19 18 17 36 36 H 1.08999 * 109.54982 * 93.96325 * 20 13 2 37 37 H 1.08998 * 109.62334 * 333.72993 * 20 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.6415 0.0570 2.4765 6 1 1.0808 0.9744 2.3757 7 6 1.9926 -0.4025 3.7282 8 7 2.6758 -1.5195 3.8510 9 14 1.4991 0.5626 5.2497 10 1 0.1714 0.0952 5.7232 11 1 2.5081 0.3517 6.3185 12 1 1.4251 2.0078 4.9167 13 6 2.0400 -0.7212 -1.2494 14 1 1.5998 -1.7177 -1.2845 15 6 3.5726 -0.8586 -1.1545 16 6 4.2086 -1.1645 -2.5213 17 6 3.3893 -2.1586 -3.3055 18 7 2.4970 -1.4050 -4.2085 19 6 1.3172 -0.9457 -3.6163 20 6 1.6015 0.0484 -2.4692 21 1 -0.3632 0.4222 0.9370 22 1 -0.3633 0.6003 -0.8341 23 1 -0.3633 -1.0225 -0.1027 24 1 1.6055 -1.7199 1.2950 25 1 3.1264 -0.7995 1.2054 26 1 2.9231 -1.8424 4.7316 27 1 3.9891 0.0724 -0.7701 28 1 3.8140 -1.6656 -0.4626 29 1 4.2872 -0.2393 -3.0922 30 1 5.2078 -1.5711 -2.3658 31 1 2.7949 -2.7659 -2.6229 32 1 4.0490 -2.7997 -3.8903 33 1 2.2997 -1.9331 -5.0454 34 1 0.7092 -0.4501 -4.3733 35 1 0.7645 -1.7968 -3.2185 36 1 2.3918 0.7361 -2.7702 37 1 0.6960 0.6108 -2.2412 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260630216.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:29 Heat of formation + Delta-G solvation = -28.544310 kcal Electronic energy + Delta-G solvation = -14770.311642 eV Core-core repulsion = 12546.186853 eV Total energy + Delta-G solvation = -2224.124789 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.10112 -35.65197 -32.71886 -32.28003 -30.26584 -27.05321 -25.64235 -24.50252 -22.79269 -20.63962 -19.79825 -18.32099 -16.77133 -16.19591 -14.76727 -14.54381 -14.42718 -13.99378 -13.56208 -13.15779 -12.89344 -12.30867 -11.73267 -11.69041 -11.41856 -11.23726 -10.97529 -10.85682 -10.78982 -10.51092 -10.40109 -10.12723 -9.83237 -9.72753 -9.49767 -8.91284 -8.78063 -8.28331 -8.22011 -5.93941 -3.94604 3.34338 3.40712 3.44073 4.36495 4.50418 5.09303 5.19977 5.29219 5.41714 5.46327 5.51461 5.63727 5.87450 5.88888 5.93165 6.05396 6.20189 6.29214 6.36578 6.38584 6.43307 6.51058 6.62318 6.77629 6.86062 6.90700 7.16499 7.20002 7.31856 7.40234 7.61244 7.76901 7.93842 8.07775 8.52154 9.12329 9.68342 11.17390 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.052046 B = 0.007278 C = 0.006696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 537.853998 B = 3846.480502 C = 4180.720487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.084 4.084 3 H 0.054 0.946 4 C 0.026 3.974 5 C -0.513 4.513 6 H 0.054 0.946 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.887 3.113 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.275 1.275 13 C -0.080 4.080 14 H 0.054 0.946 15 C -0.110 4.110 16 C -0.119 4.119 17 C 0.067 3.933 18 N -0.703 5.703 19 C 0.078 3.922 20 C -0.116 4.116 21 H 0.061 0.939 22 H 0.033 0.967 23 H 0.040 0.960 24 H 0.011 0.989 25 H 0.021 0.979 26 H 0.259 0.741 27 H 0.060 0.940 28 H 0.063 0.937 29 H 0.069 0.931 30 H 0.055 0.945 31 H 0.042 0.958 32 H 0.064 0.936 33 H 0.337 0.663 34 H 0.061 0.939 35 H 0.013 0.987 36 H 0.066 0.934 37 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.516 -0.045 -13.748 13.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.102 4.102 3 H 0.072 0.928 4 C -0.011 4.011 5 C -0.552 4.552 6 H 0.073 0.927 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.715 3.285 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.199 1.199 13 C -0.099 4.099 14 H 0.073 0.927 15 C -0.148 4.148 16 C -0.157 4.157 17 C -0.061 4.061 18 N -0.335 5.335 19 C -0.053 4.053 20 C -0.154 4.154 21 H 0.080 0.920 22 H 0.052 0.948 23 H 0.059 0.941 24 H 0.030 0.970 25 H 0.039 0.961 26 H 0.068 0.932 27 H 0.079 0.921 28 H 0.082 0.918 29 H 0.087 0.913 30 H 0.074 0.926 31 H 0.061 0.939 32 H 0.082 0.918 33 H 0.156 0.844 34 H 0.080 0.920 35 H 0.031 0.969 36 H 0.085 0.915 37 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.143 0.405 -13.456 13.463 hybrid contribution -0.741 -0.397 1.066 1.357 sum -0.883 0.008 -12.391 12.422 Atomic orbital electron populations 1.21803 0.96769 1.00108 1.00513 1.21304 0.94654 0.99103 0.95150 0.92757 1.19191 0.96423 0.95172 0.90298 1.21310 1.34428 1.08211 0.91233 0.92746 1.25012 0.95402 0.95098 0.99009 1.69963 1.39187 1.21298 1.23248 0.86670 0.78193 0.80481 0.83112 1.20798 1.21319 1.19946 1.21068 0.95051 0.98810 0.94956 0.92740 1.21976 0.95057 1.02107 0.95625 1.21457 0.97931 0.99729 0.96546 1.21665 0.95087 0.94744 0.94610 1.57321 1.20315 1.46001 1.09873 1.20815 0.90304 0.97193 0.96994 1.21676 1.01676 0.97903 0.94150 0.91963 0.94825 0.94099 0.97033 0.96108 0.93177 0.92143 0.91790 0.91260 0.92631 0.93931 0.91781 0.84383 0.92038 0.96884 0.91488 0.91179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.60 8.75 37.16 0.33 -2.28 16 2 C -0.08 -1.73 1.78 -90.62 -0.16 -1.89 16 3 H 0.05 1.16 8.14 -51.93 -0.42 0.73 16 4 C 0.03 0.67 4.12 -27.88 -0.11 0.56 16 5 C -0.51 -14.56 8.33 -34.44 -0.29 -14.85 16 6 H 0.05 1.51 7.08 -52.49 -0.37 1.14 16 7 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 8 N -0.90 -27.24 13.29 55.43 0.74 -26.51 16 9 Si 0.89 21.94 29.54 -169.99 -5.02 16.91 16 10 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 11 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 12 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 13 C -0.08 -1.41 1.31 -91.13 -0.12 -1.53 16 14 H 0.05 1.00 6.57 -51.93 -0.34 0.66 16 15 C -0.11 -1.90 4.11 -25.69 -0.11 -2.00 16 16 C -0.12 -1.68 5.41 -27.40 -0.15 -1.83 16 17 C 0.07 0.86 6.22 -4.52 -0.03 0.83 16 18 N -0.70 -8.58 6.07 -118.54 -0.72 -9.30 16 19 C 0.08 1.01 5.99 -6.75 -0.04 0.97 16 20 C -0.12 -1.74 5.02 -27.11 -0.14 -1.88 16 21 H 0.06 1.30 6.80 -51.93 -0.35 0.95 16 22 H 0.03 0.55 6.33 -51.93 -0.33 0.22 16 23 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 25 H 0.02 0.56 6.37 -51.93 -0.33 0.23 16 26 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 27 H 0.06 1.10 7.98 -51.93 -0.41 0.68 16 28 H 0.06 1.21 7.24 -51.93 -0.38 0.84 16 29 H 0.07 1.00 7.26 -51.93 -0.38 0.62 16 30 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.04 0.60 6.66 -51.93 -0.35 0.26 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.34 3.34 8.85 -39.29 -0.35 3.00 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.01 0.18 7.54 -51.93 -0.39 -0.21 16 36 H 0.07 1.02 7.11 -51.93 -0.37 0.66 16 37 H 0.07 1.04 5.72 -51.93 -0.30 0.74 16 LS Contribution 275.40 15.07 4.15 4.15 Total: -1.00 -29.71 275.40 -8.08 -37.80 By element: Atomic # 1 Polarization: 5.66 SS G_CDS: -6.32 Total: -0.66 kcal Atomic # 6 Polarization: -21.48 SS G_CDS: -0.91 Total: -22.39 kcal Atomic # 7 Polarization: -35.83 SS G_CDS: 0.02 Total: -35.81 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -29.71 -8.08 -37.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260630216.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.251 kcal (2) G-P(sol) polarization free energy of solvation -29.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds