Wall clock time and date at job start Mon Mar 30 2020 03:33:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.46910 * 2 1 4 4 C 1.52998 * 109.47472 * 120.00387 * 2 1 3 5 5 C 1.50701 * 109.46791 * 294.99986 * 4 2 1 6 6 H 1.07993 * 120.00044 * 359.97438 * 5 4 2 7 7 C 1.37884 * 119.99285 * 179.97438 * 5 4 2 8 8 N 1.31505 * 120.00300 * 0.02562 * 7 5 4 9 9 Si 1.86807 * 119.99428 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.46980 * 90.00060 * 9 7 5 11 11 H 1.48494 * 109.47065 * 210.00095 * 9 7 5 12 12 H 1.48497 * 109.47267 * 330.00539 * 9 7 5 13 13 C 1.53003 * 109.46712 * 240.00433 * 2 1 3 14 14 H 1.08996 * 108.82874 * 304.96159 * 13 2 1 15 15 C 1.54173 * 108.84904 * 186.55173 * 13 2 1 16 16 C 1.53830 * 111.96557 * 197.68125 * 15 13 2 17 17 C 1.50814 * 111.62349 * 319.04491 * 16 15 13 18 18 N 1.47632 * 108.05398 * 95.05403 * 17 16 15 19 19 C 1.39770 * 114.76041 * 277.20192 * 18 17 16 20 20 C 1.50749 * 108.85321 * 63.46768 * 13 2 1 21 21 H 1.09000 * 109.46532 * 294.25914 * 1 2 3 22 22 H 1.08997 * 109.46955 * 54.25916 * 1 2 3 23 23 H 1.08996 * 109.47108 * 174.26613 * 1 2 3 24 24 H 1.09001 * 109.46970 * 54.99926 * 4 2 1 25 25 H 1.09000 * 109.47142 * 174.99935 * 4 2 1 26 26 H 0.97003 * 119.99893 * 179.97438 * 8 7 5 27 27 H 1.08994 * 108.98876 * 318.32088 * 15 13 2 28 28 H 1.09000 * 108.98064 * 77.04611 * 15 13 2 29 29 H 1.09000 * 109.04970 * 79.59262 * 16 15 13 30 30 H 1.08994 * 109.04976 * 198.49480 * 16 15 13 31 31 H 1.08998 * 109.74705 * 335.41755 * 17 16 15 32 32 H 1.09001 * 109.74568 * 214.69539 * 17 16 15 33 33 H 1.00904 * 110.99776 * 150.34961 * 18 17 16 34 34 H 1.09007 * 109.02374 * 182.86439 * 19 18 17 35 35 H 1.09006 * 109.02348 * 301.75654 * 19 18 17 36 36 H 1.08999 * 109.54982 * 93.96325 * 20 13 2 37 37 H 1.08998 * 109.62334 * 333.72993 * 20 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.6415 0.0570 2.4765 6 1 1.0808 0.9744 2.3757 7 6 1.9926 -0.4025 3.7282 8 7 2.6758 -1.5195 3.8510 9 14 1.4991 0.5626 5.2497 10 1 0.1714 0.0952 5.7232 11 1 2.5081 0.3517 6.3185 12 1 1.4251 2.0078 4.9167 13 6 2.0400 -0.7212 -1.2494 14 1 1.5998 -1.7177 -1.2845 15 6 3.5726 -0.8586 -1.1545 16 6 4.2086 -1.1645 -2.5213 17 6 3.3893 -2.1586 -3.3055 18 7 2.4970 -1.4050 -4.2085 19 6 1.3172 -0.9457 -3.6163 20 6 1.6015 0.0484 -2.4692 21 1 -0.3632 0.4222 0.9370 22 1 -0.3633 0.6003 -0.8341 23 1 -0.3633 -1.0225 -0.1027 24 1 1.6055 -1.7199 1.2950 25 1 3.1264 -0.7995 1.2054 26 1 2.9231 -1.8424 4.7316 27 1 3.9891 0.0724 -0.7701 28 1 3.8140 -1.6656 -0.4626 29 1 4.2872 -0.2393 -3.0922 30 1 5.2078 -1.5711 -2.3658 31 1 2.7949 -2.7659 -2.6229 32 1 4.0490 -2.7997 -3.8903 33 1 2.2997 -1.9331 -5.0454 34 1 0.7092 -0.4501 -4.3733 35 1 0.7645 -1.7968 -3.2185 36 1 2.3918 0.7361 -2.7702 37 1 0.6960 0.6108 -2.2412 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260630216.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:29 Heat of formation + Delta-G solvation = -47.166112 kcal Electronic energy + Delta-G solvation = -14771.119144 eV Core-core repulsion = 12546.186853 eV Total energy + Delta-G solvation = -2224.932291 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.37694 -37.15692 -34.70079 -33.56996 -31.82133 -28.90491 -27.14331 -25.76567 -24.67447 -21.79336 -21.39089 -19.80066 -18.52431 -17.70863 -16.56948 -15.83962 -15.67278 -15.44795 -15.14033 -14.68669 -14.23230 -14.14238 -13.42548 -13.10318 -12.97338 -12.91983 -12.71811 -12.50641 -12.24147 -12.07876 -11.88385 -11.59383 -11.47634 -11.40154 -11.04273 -10.78276 -10.57735 -10.49865 -9.22134 -8.17394 -6.26537 1.38003 1.39157 1.50136 2.41099 3.15421 3.39234 3.84468 4.00353 4.00851 4.28561 4.30761 4.40445 4.48542 4.62389 4.75280 4.75799 4.79306 4.88618 4.99075 5.02784 5.17497 5.21415 5.26968 5.28325 5.37255 5.41945 5.50256 5.53054 5.55586 5.74539 5.87652 5.92328 6.31845 6.39557 6.73845 6.90466 7.41384 8.94363 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.052046 B = 0.007278 C = 0.006696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 537.853998 B = 3846.480502 C = 4180.720487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.079 4.079 3 H 0.049 0.951 4 C 0.034 3.966 5 C -0.532 4.532 6 H 0.059 0.941 7 C -0.003 4.003 8 N -0.936 5.936 9 Si 0.959 3.041 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.264 1.264 13 C -0.070 4.070 14 H 0.043 0.957 15 C -0.109 4.109 16 C -0.110 4.110 17 C 0.068 3.932 18 N -0.702 5.702 19 C 0.082 3.918 20 C -0.111 4.111 21 H 0.042 0.958 22 H 0.069 0.931 23 H 0.038 0.962 24 H -0.021 1.021 25 H -0.004 1.004 26 H 0.261 0.739 27 H 0.044 0.956 28 H 0.034 0.966 29 H 0.073 0.927 30 H 0.065 0.935 31 H 0.025 0.975 32 H 0.090 0.910 33 H 0.355 0.645 34 H 0.086 0.914 35 H 0.006 0.994 36 H 0.067 0.933 37 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.213 0.889 -15.185 15.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.097 4.097 3 H 0.068 0.932 4 C -0.003 4.003 5 C -0.570 4.570 6 H 0.077 0.923 7 C -0.200 4.200 8 N -0.576 5.576 9 Si 0.784 3.216 10 H -0.199 1.199 11 H -0.209 1.209 12 H -0.188 1.188 13 C -0.089 4.089 14 H 0.062 0.938 15 C -0.147 4.147 16 C -0.148 4.148 17 C -0.060 4.060 18 N -0.335 5.335 19 C -0.049 4.049 20 C -0.149 4.149 21 H 0.061 0.939 22 H 0.088 0.912 23 H 0.057 0.943 24 H -0.002 1.002 25 H 0.014 0.986 26 H 0.070 0.930 27 H 0.063 0.937 28 H 0.053 0.947 29 H 0.091 0.909 30 H 0.084 0.916 31 H 0.043 0.957 32 H 0.108 0.892 33 H 0.176 0.824 34 H 0.104 0.896 35 H 0.024 0.976 36 H 0.085 0.915 37 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -0.849 1.341 -14.918 15.003 hybrid contribution -0.492 -0.712 1.519 1.748 sum -1.341 0.630 -13.400 13.481 Atomic orbital electron populations 1.21727 0.95284 1.00582 1.00972 1.21205 0.95896 0.98317 0.94322 0.93242 1.19055 0.94711 0.93928 0.92569 1.21724 1.34324 1.08525 0.92392 0.92321 1.25950 0.95299 0.96114 1.02612 1.70105 1.40355 1.23015 1.24172 0.85531 0.78020 0.79303 0.78721 1.19888 1.20861 1.18793 1.20967 0.94886 0.98207 0.94796 0.93805 1.21929 0.95331 1.00176 0.97224 1.21392 0.98426 1.00481 0.94513 1.21643 0.95290 0.94388 0.94713 1.57274 1.19886 1.46173 1.10205 1.20761 0.90784 0.96548 0.96811 1.21616 1.01771 0.98065 0.93454 0.93921 0.91234 0.94257 1.00217 0.98584 0.93011 0.93684 0.94743 0.90866 0.91586 0.95706 0.89163 0.82400 0.89615 0.97632 0.91478 0.90552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.88 8.75 71.98 0.63 -4.25 16 2 C -0.08 -3.32 1.78 -10.79 -0.02 -3.34 16 3 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 4 C 0.03 1.86 4.12 29.85 0.12 1.98 16 5 C -0.53 -30.85 8.33 25.60 0.21 -30.63 16 6 H 0.06 3.28 7.08 -2.91 -0.02 3.26 16 7 C 0.00 -0.16 5.46 84.66 0.46 0.30 16 8 N -0.94 -58.39 13.29 21.45 0.28 -58.11 16 9 Si 0.96 45.34 29.54 68.60 2.03 47.37 16 10 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 11 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 12 H -0.26 -11.91 7.11 99.48 0.71 -11.20 16 13 C -0.07 -2.46 1.31 -11.13 -0.01 -2.48 16 14 H 0.04 1.63 6.57 -2.39 -0.02 1.62 16 15 C -0.11 -3.86 4.11 31.27 0.13 -3.73 16 16 C -0.11 -3.00 5.41 30.16 0.16 -2.84 16 17 C 0.07 1.61 6.22 85.45 0.53 2.14 16 18 N -0.70 -15.06 6.07 -528.96 -3.21 -18.27 16 19 C 0.08 1.90 5.99 88.07 0.53 2.43 16 20 C -0.11 -3.12 5.02 30.35 0.15 -2.96 16 21 H 0.04 1.76 6.80 -2.39 -0.02 1.75 16 22 H 0.07 2.13 6.33 -2.39 -0.02 2.11 16 23 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 24 H -0.02 -1.23 8.14 -2.39 -0.02 -1.25 16 25 H 0.00 -0.24 6.37 -2.39 -0.02 -0.26 16 26 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 27 H 0.04 1.69 7.98 -2.39 -0.02 1.68 16 28 H 0.03 1.39 7.24 -2.39 -0.02 1.37 16 29 H 0.07 1.97 7.26 -2.39 -0.02 1.95 16 30 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.02 0.68 6.66 -2.39 -0.02 0.67 16 32 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.36 5.76 8.85 -89.69 -0.79 4.97 16 34 H 0.09 1.63 8.14 -2.38 -0.02 1.61 16 35 H 0.01 0.14 7.54 -2.38 -0.02 0.13 16 36 H 0.07 1.90 7.11 -2.39 -0.02 1.88 16 37 H 0.08 2.04 5.72 -2.39 -0.01 2.03 16 Total: -1.00 -65.06 275.40 2.24 -62.83 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: 0.24 Total: 9.57 kcal Atomic # 6 Polarization: -46.29 SS G_CDS: 2.90 Total: -43.39 kcal Atomic # 7 Polarization: -73.45 SS G_CDS: -2.93 Total: -76.37 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.37 kcal Total: -65.06 2.24 -62.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260630216.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.661 kcal (2) G-P(sol) polarization free energy of solvation -65.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds