Wall clock time and date at job start Mon Mar 30 2020 03:32:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08996 * 109.46884 * 2 1 4 4 C 1.52998 * 109.47296 * 239.99593 * 2 1 3 5 5 C 1.50703 * 109.46641 * 65.82299 * 4 2 1 6 6 H 1.07998 * 120.00112 * 359.97438 * 5 4 2 7 7 C 1.37883 * 119.99644 * 180.02562 * 5 4 2 8 8 N 1.31514 * 119.99972 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99932 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47120 * 89.99407 * 9 7 5 11 11 H 1.48494 * 109.47092 * 209.99778 * 9 7 5 12 12 H 1.48497 * 109.46738 * 329.99461 * 9 7 5 13 13 C 1.53003 * 109.46679 * 119.99666 * 2 1 3 14 14 H 1.08994 * 109.46565 * 300.94040 * 13 2 1 15 15 C 1.53039 * 109.46360 * 60.92456 * 13 2 1 16 16 C 1.53116 * 109.27820 * 179.18222 * 15 13 2 17 17 C 1.53121 * 109.15930 * 302.34281 * 16 15 13 18 18 C 1.53036 * 109.27926 * 57.65961 * 17 16 15 19 19 N 1.46826 * 109.45489 * 180.96086 * 13 2 1 20 20 C 1.46903 * 110.98225 * 54.15139 * 19 13 2 21 21 H 1.08997 * 109.47300 * 300.00029 * 1 2 3 22 22 H 1.08999 * 109.46598 * 60.00126 * 1 2 3 23 23 H 1.08996 * 109.46884 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.46941 * 185.81406 * 4 2 1 25 25 H 1.08997 * 109.47603 * 305.82189 * 4 2 1 26 26 H 0.96995 * 119.99892 * 180.02562 * 8 7 5 27 27 H 1.09002 * 109.49963 * 59.23968 * 15 13 2 28 28 H 1.09004 * 109.53415 * 299.14238 * 15 13 2 29 29 H 1.09007 * 109.52100 * 182.43938 * 16 15 13 30 30 H 1.09001 * 109.57579 * 62.27980 * 16 15 13 31 31 H 1.09000 * 109.50506 * 297.71496 * 17 16 15 32 32 H 1.09004 * 109.53567 * 177.61764 * 17 16 15 33 33 H 1.08996 * 109.46218 * 60.83241 * 18 17 16 34 34 H 1.08992 * 109.46233 * 180.81577 * 18 17 16 35 35 H 1.09004 * 109.47274 * 177.09916 * 20 19 13 36 36 H 1.09003 * 109.47026 * 297.10180 * 20 19 13 37 37 H 1.08999 * 109.47427 * 57.10426 * 20 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6589 0.0674 -2.4754 6 1 1.1076 0.9905 -2.3739 7 6 2.0130 -0.3901 -3.7270 8 7 2.6839 -1.5145 -3.8505 9 14 1.5399 0.5872 -5.2470 10 1 2.6187 1.5558 -5.5684 11 1 1.3494 -0.3394 -6.3917 12 1 0.2755 1.3220 -4.9893 13 6 2.0400 -0.7212 1.2493 14 1 1.6629 -0.2171 2.1391 15 6 1.5488 -2.1706 1.2376 16 6 2.0783 -2.8938 2.4790 17 6 3.6074 -2.8161 2.4919 18 6 4.0390 -1.3481 2.4673 19 7 3.5081 -0.7010 1.2607 20 6 4.0162 0.6714 1.1325 21 1 -0.3634 0.5138 0.8899 22 1 -0.3632 0.5138 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 3.1252 -0.8123 -1.1986 25 1 1.5942 -1.7145 -1.3028 26 1 2.9334 -1.8361 -4.7309 27 1 1.9142 -2.6714 0.3411 28 1 0.4589 -2.1861 1.2446 29 1 1.7668 -3.9381 2.4527 30 1 1.6818 -2.4179 3.3759 31 1 4.0052 -3.3271 1.6151 32 1 3.9890 -3.2925 3.3950 33 1 3.6524 -0.8411 3.3514 34 1 5.1273 -1.2895 2.4618 35 1 5.1044 0.6633 1.1955 36 1 3.7109 1.0835 0.1707 37 1 3.6105 1.2857 1.9363 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260696218.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:56 Heat of formation + Delta-G solvation = -20.193168 kcal Electronic energy + Delta-G solvation = -15036.193662 eV Core-core repulsion = 12812.431006 eV Total energy + Delta-G solvation = -2223.762656 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.10312 -34.71134 -33.11226 -32.17908 -29.04994 -26.90270 -26.11455 -23.97786 -22.54568 -21.93251 -19.89045 -17.98783 -16.26210 -15.33100 -14.85824 -14.45093 -14.03043 -13.88254 -13.70162 -12.81567 -12.54554 -12.35036 -11.99736 -11.85919 -11.51727 -11.21386 -11.00004 -10.85508 -10.79105 -10.62223 -10.40376 -10.24916 -9.97113 -9.74191 -9.38643 -8.96600 -8.74234 -8.19740 -7.69338 -5.86164 -3.86568 3.37755 3.44228 3.46968 4.39818 4.55633 5.14103 5.20689 5.29434 5.48951 5.56158 5.70429 5.77833 5.81992 5.91505 5.95197 6.03503 6.10640 6.18271 6.23768 6.34111 6.39846 6.47459 6.50025 6.52977 6.67200 6.91430 7.01310 7.11169 7.34978 7.63876 7.73570 7.89658 8.10721 8.24418 8.60353 9.21808 9.75401 11.24718 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.039452 B = 0.008503 C = 0.008391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.548276 B = 3292.237455 C = 3336.150601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.085 4.085 3 H 0.056 0.944 4 C 0.036 3.964 5 C -0.515 4.515 6 H 0.051 0.949 7 C 0.057 3.943 8 N -0.894 5.894 9 Si 0.884 3.116 10 H -0.283 1.283 11 H -0.288 1.288 12 H -0.276 1.276 13 C 0.096 3.904 14 H 0.021 0.979 15 C -0.115 4.115 16 C -0.120 4.120 17 C -0.116 4.116 18 C 0.057 3.943 19 N -0.526 5.526 20 C 0.026 3.974 21 H 0.027 0.973 22 H 0.062 0.938 23 H 0.048 0.952 24 H 0.032 0.968 25 H 0.015 0.985 26 H 0.257 0.743 27 H 0.084 0.916 28 H 0.063 0.937 29 H 0.058 0.942 30 H 0.050 0.950 31 H 0.072 0.928 32 H 0.057 0.943 33 H 0.021 0.979 34 H 0.067 0.933 35 H 0.058 0.942 36 H 0.084 0.916 37 H 0.013 0.987 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.232 -0.066 12.135 12.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.104 4.104 3 H 0.074 0.926 4 C -0.001 4.001 5 C -0.553 4.553 6 H 0.069 0.931 7 C -0.144 4.144 8 N -0.533 5.533 9 Si 0.712 3.288 10 H -0.209 1.209 11 H -0.214 1.214 12 H -0.201 1.201 13 C -0.012 4.012 14 H 0.038 0.962 15 C -0.153 4.153 16 C -0.158 4.158 17 C -0.154 4.154 18 C -0.071 4.071 19 N -0.251 5.251 20 C -0.122 4.122 21 H 0.046 0.954 22 H 0.081 0.919 23 H 0.067 0.933 24 H 0.051 0.949 25 H 0.033 0.967 26 H 0.067 0.933 27 H 0.102 0.898 28 H 0.082 0.918 29 H 0.077 0.923 30 H 0.069 0.931 31 H 0.091 0.909 32 H 0.076 0.924 33 H 0.040 0.960 34 H 0.086 0.914 35 H 0.077 0.923 36 H 0.103 0.897 37 H 0.031 0.969 Dipole moment (debyes) X Y Z Total from point charges 0.472 -0.451 11.602 11.620 hybrid contribution -0.480 1.010 -0.207 1.137 sum -0.008 0.559 11.394 11.408 Atomic orbital electron populations 1.21774 0.96470 1.00949 0.99996 1.21334 0.94507 0.98912 0.95634 0.92606 1.19082 0.97370 0.94709 0.88915 1.21349 1.34866 1.07567 0.91540 0.93092 1.24982 0.95547 0.95050 0.98803 1.69976 1.39488 1.20823 1.23051 0.86732 0.78758 0.79973 0.83320 1.20887 1.21415 1.20095 1.21688 0.86187 0.96083 0.97225 0.96158 1.21730 0.99737 0.95280 0.98535 1.21600 0.95672 1.00131 0.98382 1.21569 0.96126 0.96065 1.01628 1.22050 0.99260 0.94911 0.90872 1.61815 1.08640 1.17670 1.36926 1.22391 0.99395 0.88765 1.01686 0.95438 0.91911 0.93263 0.94926 0.96701 0.93295 0.89767 0.91809 0.92330 0.93138 0.90881 0.92416 0.96037 0.91416 0.92320 0.89747 0.96854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.57 8.68 37.16 0.32 -2.25 16 2 C -0.09 -1.77 1.64 -90.62 -0.15 -1.92 16 3 H 0.06 1.18 6.33 -51.93 -0.33 0.85 16 4 C 0.04 0.93 3.75 -27.88 -0.10 0.82 16 5 C -0.51 -14.52 8.41 -34.44 -0.29 -14.81 16 6 H 0.05 1.41 7.11 -52.49 -0.37 1.03 16 7 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 8 N -0.89 -27.19 13.29 55.43 0.74 -26.45 16 9 Si 0.88 21.96 29.54 -169.99 -5.02 16.94 16 10 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 11 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 12 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 13 C 0.10 1.74 1.65 -67.73 -0.11 1.63 16 14 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 15 C -0.12 -1.98 4.66 -26.65 -0.12 -2.10 16 16 C -0.12 -1.70 6.00 -26.61 -0.16 -1.86 16 17 C -0.12 -1.61 6.09 -26.65 -0.16 -1.78 16 18 C 0.06 0.85 5.46 -3.83 -0.02 0.83 16 19 N -0.53 -9.40 3.92 -234.94 -0.92 -10.32 16 20 C 0.03 0.43 8.97 60.07 0.54 0.97 16 21 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 22 H 0.06 1.29 7.01 -51.93 -0.36 0.92 16 23 H 0.05 0.92 6.47 -51.93 -0.34 0.58 16 24 H 0.03 0.91 7.46 -51.93 -0.39 0.53 16 25 H 0.01 0.41 6.72 -51.93 -0.35 0.06 16 26 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 27 H 0.08 1.69 6.50 -51.93 -0.34 1.35 16 28 H 0.06 1.04 6.50 -51.93 -0.34 0.71 16 29 H 0.06 0.76 8.14 -51.92 -0.42 0.33 16 30 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.07 0.93 8.05 -51.93 -0.42 0.51 16 35 H 0.06 0.88 8.04 -51.93 -0.42 0.46 16 36 H 0.08 1.59 6.31 -51.93 -0.33 1.26 16 37 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 LS Contribution 278.79 15.07 4.20 4.20 Total: -1.00 -29.79 278.79 -7.86 -37.65 By element: Atomic # 1 Polarization: 3.40 SS G_CDS: -6.49 Total: -3.09 kcal Atomic # 6 Polarization: -18.57 SS G_CDS: -0.36 Total: -18.93 kcal Atomic # 7 Polarization: -36.59 SS G_CDS: -0.19 Total: -36.77 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -29.79 -7.86 -37.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260696218.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.454 kcal (2) G-P(sol) polarization free energy of solvation -29.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds