Wall clock time and date at job start Mon Mar 30 2020 03:32:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08996 * 109.46884 * 2 1 4 4 C 1.52998 * 109.47296 * 239.99593 * 2 1 3 5 5 C 1.50703 * 109.46641 * 65.82299 * 4 2 1 6 6 H 1.07998 * 120.00112 * 359.97438 * 5 4 2 7 7 C 1.37883 * 119.99644 * 180.02562 * 5 4 2 8 8 N 1.31514 * 119.99972 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99932 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47120 * 89.99407 * 9 7 5 11 11 H 1.48494 * 109.47092 * 209.99778 * 9 7 5 12 12 H 1.48497 * 109.46738 * 329.99461 * 9 7 5 13 13 C 1.53003 * 109.46679 * 119.99666 * 2 1 3 14 14 H 1.08994 * 109.46565 * 300.94040 * 13 2 1 15 15 C 1.53039 * 109.46360 * 60.92456 * 13 2 1 16 16 C 1.53116 * 109.27820 * 179.18222 * 15 13 2 17 17 C 1.53121 * 109.15930 * 302.34281 * 16 15 13 18 18 C 1.53036 * 109.27926 * 57.65961 * 17 16 15 19 19 N 1.46826 * 109.45489 * 180.96086 * 13 2 1 20 20 C 1.46903 * 110.98225 * 54.15139 * 19 13 2 21 21 H 1.08997 * 109.47300 * 300.00029 * 1 2 3 22 22 H 1.08999 * 109.46598 * 60.00126 * 1 2 3 23 23 H 1.08996 * 109.46884 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.46941 * 185.81406 * 4 2 1 25 25 H 1.08997 * 109.47603 * 305.82189 * 4 2 1 26 26 H 0.96995 * 119.99892 * 180.02562 * 8 7 5 27 27 H 1.09002 * 109.49963 * 59.23968 * 15 13 2 28 28 H 1.09004 * 109.53415 * 299.14238 * 15 13 2 29 29 H 1.09007 * 109.52100 * 182.43938 * 16 15 13 30 30 H 1.09001 * 109.57579 * 62.27980 * 16 15 13 31 31 H 1.09000 * 109.50506 * 297.71496 * 17 16 15 32 32 H 1.09004 * 109.53567 * 177.61764 * 17 16 15 33 33 H 1.08996 * 109.46218 * 60.83241 * 18 17 16 34 34 H 1.08992 * 109.46233 * 180.81577 * 18 17 16 35 35 H 1.09004 * 109.47274 * 177.09916 * 20 19 13 36 36 H 1.09003 * 109.47026 * 297.10180 * 20 19 13 37 37 H 1.08999 * 109.47427 * 57.10426 * 20 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6589 0.0674 -2.4754 6 1 1.1076 0.9905 -2.3739 7 6 2.0130 -0.3901 -3.7270 8 7 2.6839 -1.5145 -3.8505 9 14 1.5399 0.5872 -5.2470 10 1 2.6187 1.5558 -5.5684 11 1 1.3494 -0.3394 -6.3917 12 1 0.2755 1.3220 -4.9893 13 6 2.0400 -0.7212 1.2493 14 1 1.6629 -0.2171 2.1391 15 6 1.5488 -2.1706 1.2376 16 6 2.0783 -2.8938 2.4790 17 6 3.6074 -2.8161 2.4919 18 6 4.0390 -1.3481 2.4673 19 7 3.5081 -0.7010 1.2607 20 6 4.0162 0.6714 1.1325 21 1 -0.3634 0.5138 0.8899 22 1 -0.3632 0.5138 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 3.1252 -0.8123 -1.1986 25 1 1.5942 -1.7145 -1.3028 26 1 2.9334 -1.8361 -4.7309 27 1 1.9142 -2.6714 0.3411 28 1 0.4589 -2.1861 1.2446 29 1 1.7668 -3.9381 2.4527 30 1 1.6818 -2.4179 3.3759 31 1 4.0052 -3.3271 1.6151 32 1 3.9890 -3.2925 3.3950 33 1 3.6524 -0.8411 3.3514 34 1 5.1273 -1.2895 2.4618 35 1 5.1044 0.6633 1.1955 36 1 3.7109 1.0835 0.1707 37 1 3.6105 1.2857 1.9363 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260696218.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:55 Heat of formation + Delta-G solvation = -37.973337 kcal Electronic energy + Delta-G solvation = -15036.964668 eV Core-core repulsion = 12812.431006 eV Total energy + Delta-G solvation = -2224.533662 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.48567 -36.38471 -34.40615 -34.22108 -30.54948 -28.79556 -27.44153 -25.71084 -24.15801 -23.38510 -21.18902 -19.57606 -18.41362 -16.73813 -16.45977 -16.18739 -15.43212 -15.26770 -15.14182 -14.25668 -14.08818 -13.93975 -13.67619 -13.36129 -13.13062 -12.78372 -12.69079 -12.52770 -12.40899 -12.23685 -11.95229 -11.74946 -11.45890 -11.31076 -11.04703 -10.79237 -10.61557 -10.42359 -9.01162 -8.09619 -6.17865 1.40016 1.40838 1.51360 2.45222 3.11435 3.23026 3.91743 3.98370 4.07033 4.23681 4.42700 4.45843 4.53881 4.56103 4.64722 4.72517 4.76598 4.85771 4.91314 4.99500 5.09718 5.13153 5.13735 5.25858 5.30301 5.41007 5.45269 5.52153 5.59722 5.71552 5.99921 6.06712 6.32345 6.41035 6.44130 7.01673 7.48896 9.01590 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.039452 B = 0.008503 C = 0.008391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.548276 B = 3292.237455 C = 3336.150601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.080 4.080 3 H 0.050 0.950 4 C 0.053 3.947 5 C -0.530 4.530 6 H 0.054 0.946 7 C -0.001 4.001 8 N -0.932 5.932 9 Si 0.954 3.046 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.265 1.265 13 C 0.102 3.898 14 H 0.039 0.961 15 C -0.114 4.114 16 C -0.115 4.115 17 C -0.115 4.115 18 C 0.057 3.943 19 N -0.556 5.556 20 C 0.030 3.970 21 H 0.060 0.940 22 H 0.043 0.957 23 H 0.049 0.951 24 H -0.001 1.001 25 H -0.014 1.014 26 H 0.259 0.741 27 H 0.043 0.957 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.049 0.951 32 H 0.089 0.911 33 H 0.038 0.962 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.053 0.947 37 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.302 0.652 13.691 13.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.099 4.099 3 H 0.069 0.931 4 C 0.016 3.984 5 C -0.568 4.568 6 H 0.072 0.928 7 C -0.198 4.198 8 N -0.573 5.573 9 Si 0.779 3.221 10 H -0.201 1.201 11 H -0.210 1.210 12 H -0.189 1.189 13 C -0.006 4.006 14 H 0.057 0.943 15 C -0.152 4.152 16 C -0.152 4.152 17 C -0.153 4.153 18 C -0.071 4.071 19 N -0.281 5.281 20 C -0.118 4.118 21 H 0.079 0.921 22 H 0.062 0.938 23 H 0.068 0.932 24 H 0.018 0.982 25 H 0.004 0.996 26 H 0.068 0.932 27 H 0.062 0.938 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.068 0.932 32 H 0.108 0.892 33 H 0.056 0.944 34 H 0.095 0.905 35 H 0.090 0.910 36 H 0.071 0.929 37 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -0.066 0.277 13.171 13.174 hybrid contribution -0.282 0.771 -0.681 1.067 sum -0.348 1.048 12.490 12.539 Atomic orbital electron populations 1.21697 0.95048 1.01199 1.00702 1.21202 0.95699 0.98204 0.94815 0.93131 1.18806 0.95022 0.93582 0.90965 1.21772 1.34517 1.07784 0.92739 0.92767 1.25877 0.95505 0.96088 1.02313 1.70123 1.40764 1.22590 1.23858 0.85620 0.78877 0.78508 0.79070 1.20130 1.21045 1.18908 1.21566 0.86735 0.96251 0.96061 0.94305 1.21678 1.00091 0.94856 0.98559 1.21573 0.95758 1.00618 0.97251 1.21589 0.95988 0.95619 1.02098 1.22137 0.99838 0.95107 0.89997 1.61769 1.08527 1.18505 1.39314 1.22301 1.00295 0.88596 1.00596 0.92080 0.93768 0.93246 0.98246 0.99575 0.93243 0.93787 0.91203 0.91110 0.91105 0.93200 0.89249 0.94386 0.90462 0.90951 0.92862 0.95022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.83 8.68 71.98 0.63 -4.21 16 2 C -0.08 -3.36 1.64 -10.79 -0.02 -3.38 16 3 H 0.05 2.15 6.33 -2.39 -0.02 2.14 16 4 C 0.05 2.85 3.75 29.85 0.11 2.96 16 5 C -0.53 -30.61 8.41 25.60 0.22 -30.39 16 6 H 0.05 3.02 7.11 -2.91 -0.02 3.00 16 7 C 0.00 -0.05 5.46 84.66 0.46 0.41 16 8 N -0.93 -58.41 13.29 21.45 0.28 -58.12 16 9 Si 0.95 45.54 29.54 68.60 2.03 47.57 16 10 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 11 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 12 H -0.26 -12.07 7.11 99.48 0.71 -11.36 16 13 C 0.10 3.60 1.65 44.94 0.07 3.67 16 14 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 15 C -0.11 -3.87 4.66 30.65 0.14 -3.73 16 16 C -0.11 -2.98 6.00 30.67 0.18 -2.79 16 17 C -0.12 -2.97 6.09 30.65 0.19 -2.78 16 18 C 0.06 1.55 5.46 86.32 0.47 2.02 16 19 N -0.56 -19.54 3.92 -897.21 -3.52 -23.06 16 20 C 0.03 0.98 8.97 127.69 1.14 2.13 16 21 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 22 H 0.04 1.79 7.01 -2.39 -0.02 1.78 16 23 H 0.05 1.82 6.47 -2.39 -0.02 1.81 16 24 H 0.00 -0.05 7.46 -2.38 -0.02 -0.07 16 25 H -0.01 -0.83 6.72 -2.39 -0.02 -0.84 16 26 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 27 H 0.04 1.83 6.50 -2.39 -0.02 1.82 16 28 H 0.07 2.23 6.50 -2.38 -0.02 2.21 16 29 H 0.07 1.67 8.14 -2.38 -0.02 1.65 16 30 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.09 1.75 8.14 -2.38 -0.02 1.73 16 33 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.08 1.95 8.05 -2.39 -0.02 1.93 16 35 H 0.07 2.10 8.04 -2.38 -0.02 2.08 16 36 H 0.05 2.04 6.31 -2.39 -0.02 2.03 16 37 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 Total: -1.00 -65.43 278.79 3.40 -62.03 By element: Atomic # 1 Polarization: 6.65 SS G_CDS: 1.01 Total: 7.66 kcal Atomic # 6 Polarization: -39.68 SS G_CDS: 3.60 Total: -36.08 kcal Atomic # 7 Polarization: -77.95 SS G_CDS: -3.23 Total: -81.18 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.57 kcal Total: -65.43 3.40 -62.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260696218.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.055 kcal (2) G-P(sol) polarization free energy of solvation -65.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds