Wall clock time and date at job start Mon Mar 30 2020 03:13:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.57516 * 2 1 4 4 C 1.54507 * 109.57783 * 239.74805 * 2 1 3 5 5 C 1.45865 * 111.59095 * 163.01138 * 4 2 1 6 6 N 1.47798 * 112.92150 * 61.32430 * 5 4 2 7 7 C 1.46899 * 110.99950 * 153.86166 * 6 5 4 8 8 C 1.44276 * 109.45557 * 276.72593 * 6 5 4 9 9 C 1.54064 * 111.97582 * 96.44635 * 8 6 5 10 10 C 1.50468 * 109.57459 * 120.37119 * 2 1 3 11 11 H 1.08997 * 108.76911 * 91.04232 * 10 2 1 12 12 C 1.53006 * 108.76720 * 332.88410 * 10 2 1 13 13 C 1.50700 * 109.46980 * 175.00063 * 12 10 2 14 14 H 1.08002 * 119.99853 * 359.97438 * 13 12 10 15 15 C 1.37879 * 120.00056 * 180.02562 * 13 12 10 16 16 N 1.31511 * 120.00163 * 179.97438 * 15 13 12 17 17 Si 1.86805 * 119.99729 * 359.97438 * 15 13 12 18 18 H 1.48502 * 109.46656 * 90.00319 * 17 15 13 19 19 H 1.48493 * 109.46840 * 210.00011 * 17 15 13 20 20 H 1.48502 * 109.47278 * 330.00495 * 17 15 13 21 21 H 1.09002 * 109.47153 * 180.25179 * 1 2 3 22 22 H 1.09001 * 109.46832 * 60.25370 * 1 2 3 23 23 H 1.09004 * 109.47261 * 300.25351 * 1 2 3 24 24 H 1.09002 * 109.05638 * 283.55518 * 4 2 1 25 25 H 1.08998 * 109.05550 * 42.53661 * 4 2 1 26 26 H 1.08996 * 108.78881 * 182.21085 * 5 4 2 27 27 H 1.08997 * 108.78746 * 300.54930 * 5 4 2 28 28 H 1.09000 * 109.47165 * 63.94943 * 7 6 5 29 29 H 1.09000 * 109.47192 * 183.95458 * 7 6 5 30 30 H 1.08998 * 109.46815 * 303.94965 * 7 6 5 31 31 H 1.08999 * 108.98281 * 217.08710 * 8 6 5 32 32 H 1.09004 * 108.98119 * 335.88819 * 8 6 5 33 33 H 1.09000 * 108.92017 * 79.64063 * 9 8 6 34 34 H 1.09004 * 108.92076 * 198.19674 * 9 8 6 35 35 H 1.08997 * 109.47064 * 294.99696 * 12 10 2 36 36 H 1.08995 * 109.47096 * 54.99568 * 12 10 2 37 37 H 0.96993 * 120.00134 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8952 1.0270 0.0000 4 6 2.0477 -0.7334 -1.2575 5 6 3.4497 -0.4269 -1.5185 6 7 4.3448 -0.8459 -0.4196 7 6 5.7023 -1.1065 -0.9167 8 6 4.3556 0.1697 0.6051 9 6 3.3714 -0.1519 1.7459 10 6 2.0341 -0.7168 1.2232 11 1 2.1693 -1.7709 0.9811 12 6 0.9841 -0.6000 2.3299 13 6 1.4171 -1.4152 3.5212 14 1 2.3479 -1.9622 3.4916 15 6 0.6245 -1.4635 4.6483 16 7 1.0021 -2.1753 5.6877 17 14 -0.9858 -0.5180 4.6990 18 1 -2.0829 -1.3816 4.1932 19 1 -1.2786 -0.1139 6.0976 20 1 -0.8759 0.6929 3.8464 21 1 -0.3633 -1.0277 0.0045 22 1 -0.3633 0.5099 -0.8923 23 1 -0.3634 0.5178 0.8877 24 1 1.9394 -1.8083 -1.1124 25 1 1.4517 -0.4288 -2.1178 26 1 3.7555 -0.9343 -2.4334 27 1 3.5529 0.6486 -1.6628 28 1 6.1308 -0.1825 -1.3049 29 1 6.3222 -1.4802 -0.1017 30 1 5.6612 -1.8504 -1.7124 31 1 5.3620 0.2475 1.0166 32 1 4.0801 1.1257 0.1597 33 1 3.8285 -0.8844 2.4112 34 1 3.1735 0.7599 2.3096 35 1 0.8798 0.4446 2.6230 36 1 0.0272 -0.9718 1.9636 37 1 0.4447 -2.2090 6.4808 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260760956.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:41 Heat of formation + Delta-G solvation = -8.677594 kcal Electronic energy + Delta-G solvation = -14996.604311 eV Core-core repulsion = 12773.341008 eV Total energy + Delta-G solvation = -2223.263303 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.24343 -35.72976 -33.04628 -31.85894 -29.44965 -28.42865 -25.61717 -24.03056 -22.82436 -21.19869 -20.13852 -18.07016 -16.72056 -15.42635 -15.34070 -14.55256 -14.30003 -13.86296 -13.18557 -12.96010 -12.80573 -12.60962 -12.39812 -11.95672 -11.66023 -11.60507 -11.00989 -10.92058 -10.84448 -10.59886 -10.36976 -10.11667 -9.86123 -9.65945 -9.36103 -9.04590 -8.79280 -8.41261 -8.01771 -5.93046 -3.88375 3.36529 3.43851 3.47655 4.16154 4.54406 4.99278 5.25337 5.30955 5.40507 5.48603 5.55118 5.59666 5.61789 5.79762 5.88719 5.92684 5.97262 6.08874 6.16957 6.23383 6.28829 6.42579 6.57841 6.68980 6.74718 6.86552 7.03477 7.17919 7.21582 7.32979 7.40109 7.53746 7.68745 7.95565 8.69467 9.15112 9.71033 11.20787 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.039463 B = 0.009282 C = 0.007984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.357010 B = 3015.795340 C = 3506.230397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.082 4.082 3 H 0.056 0.944 4 C -0.113 4.113 5 C 0.062 3.938 6 N -0.530 5.530 7 C 0.028 3.972 8 C 0.053 3.947 9 C -0.090 4.090 10 C -0.059 4.059 11 H 0.065 0.935 12 C -0.017 4.017 13 C -0.509 4.509 14 H 0.073 0.927 15 C 0.063 3.937 16 N -0.908 5.908 17 Si 0.875 3.125 18 H -0.279 1.279 19 H -0.290 1.290 20 H -0.266 1.266 21 H 0.055 0.945 22 H 0.037 0.963 23 H 0.061 0.939 24 H 0.069 0.931 25 H 0.057 0.943 26 H 0.059 0.941 27 H 0.030 0.970 28 H 0.018 0.982 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.055 0.945 32 H 0.032 0.968 33 H 0.067 0.933 34 H 0.055 0.945 35 H 0.011 0.989 36 H 0.018 0.982 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.374 5.188 -14.003 15.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.101 4.101 3 H 0.074 0.926 4 C -0.151 4.151 5 C -0.065 4.065 6 N -0.254 5.254 7 C -0.121 4.121 8 C -0.075 4.075 9 C -0.128 4.128 10 C -0.078 4.078 11 H 0.084 0.916 12 C -0.054 4.054 13 C -0.547 4.547 14 H 0.091 0.909 15 C -0.137 4.137 16 N -0.548 5.548 17 Si 0.703 3.297 18 H -0.205 1.205 19 H -0.217 1.217 20 H -0.191 1.191 21 H 0.074 0.926 22 H 0.056 0.944 23 H 0.080 0.920 24 H 0.088 0.912 25 H 0.076 0.924 26 H 0.077 0.923 27 H 0.048 0.952 28 H 0.037 0.963 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.073 0.927 32 H 0.050 0.950 33 H 0.086 0.914 34 H 0.074 0.926 35 H 0.029 0.971 36 H 0.036 0.964 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 4.147 4.695 -13.616 14.988 hybrid contribution -0.523 1.174 -0.101 1.289 sum 3.623 5.869 -13.718 15.354 Atomic orbital electron populations 1.21972 0.95900 1.01699 1.00544 1.20973 0.95074 0.98770 0.95240 0.92567 1.20682 0.94608 1.01859 0.97942 1.20997 0.94463 0.97910 0.93180 1.61606 1.08542 1.44686 1.10587 1.22446 0.89888 0.99351 1.00371 1.22086 0.99600 0.91988 0.93838 1.21854 0.94686 1.00977 0.95327 1.20661 0.94398 0.99295 0.93420 0.91636 1.19943 0.94700 0.96416 0.94328 1.21275 1.07668 1.28452 0.97321 0.90914 1.25040 0.97757 0.95200 0.95715 1.69921 1.38449 1.41513 1.04948 0.86847 0.84720 0.81154 0.76965 1.20472 1.21660 1.19072 0.92583 0.94437 0.91966 0.91225 0.92441 0.92275 0.95229 0.96341 0.91410 0.91810 0.92684 0.94973 0.91440 0.92605 0.97115 0.96376 0.93018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.37 7.74 37.16 0.29 -2.08 16 2 C -0.08 -1.37 2.26 -91.09 -0.21 -1.58 16 3 H 0.06 0.92 7.16 -51.93 -0.37 0.55 16 4 C -0.11 -1.63 4.92 -29.32 -0.14 -1.77 16 5 C 0.06 0.83 4.96 -6.71 -0.03 0.80 16 6 N -0.53 -7.91 4.48 -247.88 -1.11 -9.02 16 7 C 0.03 0.33 9.19 60.06 0.55 0.89 16 8 C 0.05 0.83 5.18 -4.67 -0.02 0.81 16 9 C -0.09 -1.74 4.96 -25.50 -0.13 -1.87 16 10 C -0.06 -1.20 1.68 -91.20 -0.15 -1.35 16 11 H 0.07 1.44 7.38 -51.93 -0.38 1.06 16 12 C -0.02 -0.40 2.18 -27.88 -0.06 -0.46 16 13 C -0.51 -14.60 9.06 -34.44 -0.31 -14.92 16 14 H 0.07 2.26 7.16 -52.49 -0.38 1.88 16 15 C 0.06 1.86 5.47 -17.82 -0.10 1.76 16 16 N -0.91 -28.55 13.96 55.43 0.77 -27.78 16 17 Si 0.88 22.18 27.47 -169.99 -4.67 17.51 16 18 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 19 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 20 H -0.27 -6.46 6.54 56.52 0.37 -6.09 16 21 H 0.06 0.94 7.69 -51.93 -0.40 0.54 16 22 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 23 H 0.06 1.11 6.42 -51.93 -0.33 0.78 16 24 H 0.07 1.08 7.59 -51.93 -0.39 0.69 16 25 H 0.06 0.72 8.02 -51.93 -0.42 0.30 16 26 H 0.06 0.69 7.68 -51.93 -0.40 0.29 16 27 H 0.03 0.38 7.23 -51.93 -0.38 0.01 16 28 H 0.02 0.20 8.14 -51.93 -0.42 -0.22 16 29 H 0.07 0.80 8.10 -51.93 -0.42 0.38 16 30 H 0.06 0.69 7.95 -51.93 -0.41 0.27 16 31 H 0.05 0.80 7.55 -51.93 -0.39 0.40 16 32 H 0.03 0.48 6.50 -51.93 -0.34 0.14 16 33 H 0.07 1.45 7.27 -51.93 -0.38 1.07 16 34 H 0.06 1.10 7.94 -51.93 -0.41 0.68 16 35 H 0.01 0.26 6.94 -51.93 -0.36 -0.10 16 36 H 0.02 0.43 5.36 -51.93 -0.28 0.15 16 37 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 LS Contribution 272.82 15.07 4.11 4.11 Total: -1.00 -30.51 272.82 -7.67 -38.18 By element: Atomic # 1 Polarization: 3.21 SS G_CDS: -6.45 Total: -3.25 kcal Atomic # 6 Polarization: -19.45 SS G_CDS: -0.32 Total: -19.77 kcal Atomic # 7 Polarization: -36.45 SS G_CDS: -0.34 Total: -36.79 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -4.67 Total: 17.51 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -30.51 -7.67 -38.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260760956.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.500 kcal (2) G-P(sol) polarization free energy of solvation -30.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds