Wall clock time and date at job start Mon Mar 30 2020 03:13:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.57516 * 2 1 4 4 C 1.54507 * 109.57783 * 239.74805 * 2 1 3 5 5 C 1.45865 * 111.59095 * 163.01138 * 4 2 1 6 6 N 1.47798 * 112.92150 * 61.32430 * 5 4 2 7 7 C 1.46899 * 110.99950 * 153.86166 * 6 5 4 8 8 C 1.44276 * 109.45557 * 276.72593 * 6 5 4 9 9 C 1.54064 * 111.97582 * 96.44635 * 8 6 5 10 10 C 1.50468 * 109.57459 * 120.37119 * 2 1 3 11 11 H 1.08997 * 108.76911 * 91.04232 * 10 2 1 12 12 C 1.53006 * 108.76720 * 332.88410 * 10 2 1 13 13 C 1.50700 * 109.46980 * 175.00063 * 12 10 2 14 14 H 1.08002 * 119.99853 * 359.97438 * 13 12 10 15 15 C 1.37879 * 120.00056 * 180.02562 * 13 12 10 16 16 N 1.31511 * 120.00163 * 179.97438 * 15 13 12 17 17 Si 1.86805 * 119.99729 * 359.97438 * 15 13 12 18 18 H 1.48502 * 109.46656 * 90.00319 * 17 15 13 19 19 H 1.48493 * 109.46840 * 210.00011 * 17 15 13 20 20 H 1.48502 * 109.47278 * 330.00495 * 17 15 13 21 21 H 1.09002 * 109.47153 * 180.25179 * 1 2 3 22 22 H 1.09001 * 109.46832 * 60.25370 * 1 2 3 23 23 H 1.09004 * 109.47261 * 300.25351 * 1 2 3 24 24 H 1.09002 * 109.05638 * 283.55518 * 4 2 1 25 25 H 1.08998 * 109.05550 * 42.53661 * 4 2 1 26 26 H 1.08996 * 108.78881 * 182.21085 * 5 4 2 27 27 H 1.08997 * 108.78746 * 300.54930 * 5 4 2 28 28 H 1.09000 * 109.47165 * 63.94943 * 7 6 5 29 29 H 1.09000 * 109.47192 * 183.95458 * 7 6 5 30 30 H 1.08998 * 109.46815 * 303.94965 * 7 6 5 31 31 H 1.08999 * 108.98281 * 217.08710 * 8 6 5 32 32 H 1.09004 * 108.98119 * 335.88819 * 8 6 5 33 33 H 1.09000 * 108.92017 * 79.64063 * 9 8 6 34 34 H 1.09004 * 108.92076 * 198.19674 * 9 8 6 35 35 H 1.08997 * 109.47064 * 294.99696 * 12 10 2 36 36 H 1.08995 * 109.47096 * 54.99568 * 12 10 2 37 37 H 0.96993 * 120.00134 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8952 1.0270 0.0000 4 6 2.0477 -0.7334 -1.2575 5 6 3.4497 -0.4269 -1.5185 6 7 4.3448 -0.8459 -0.4196 7 6 5.7023 -1.1065 -0.9167 8 6 4.3556 0.1697 0.6051 9 6 3.3714 -0.1519 1.7459 10 6 2.0341 -0.7168 1.2232 11 1 2.1693 -1.7709 0.9811 12 6 0.9841 -0.6000 2.3299 13 6 1.4171 -1.4152 3.5212 14 1 2.3479 -1.9622 3.4916 15 6 0.6245 -1.4635 4.6483 16 7 1.0021 -2.1753 5.6877 17 14 -0.9858 -0.5180 4.6990 18 1 -2.0829 -1.3816 4.1932 19 1 -1.2786 -0.1139 6.0976 20 1 -0.8759 0.6929 3.8464 21 1 -0.3633 -1.0277 0.0045 22 1 -0.3633 0.5099 -0.8923 23 1 -0.3634 0.5178 0.8877 24 1 1.9394 -1.8083 -1.1124 25 1 1.4517 -0.4288 -2.1178 26 1 3.7555 -0.9343 -2.4334 27 1 3.5529 0.6486 -1.6628 28 1 6.1308 -0.1825 -1.3049 29 1 6.3222 -1.4802 -0.1017 30 1 5.6612 -1.8504 -1.7124 31 1 5.3620 0.2475 1.0166 32 1 4.0801 1.1257 0.1597 33 1 3.8285 -0.8844 2.4112 34 1 3.1735 0.7599 2.3096 35 1 0.8798 0.4446 2.6230 36 1 0.0272 -0.9718 1.9636 37 1 0.4447 -2.2090 6.4808 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260760956.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:41 Heat of formation + Delta-G solvation = -28.442333 kcal Electronic energy + Delta-G solvation = -14997.461374 eV Core-core repulsion = 12773.341008 eV Total energy + Delta-G solvation = -2224.120367 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.53419 -37.12395 -34.85924 -33.60635 -30.83787 -30.03963 -27.03521 -25.50583 -24.15235 -22.94327 -21.33942 -19.64331 -18.89783 -16.64165 -16.59145 -16.21406 -15.78442 -15.38947 -14.77434 -14.50498 -14.14454 -13.90783 -13.81272 -13.70014 -13.09401 -12.90797 -12.67681 -12.46693 -12.24361 -11.98567 -11.86231 -11.65857 -11.48348 -11.36611 -11.05381 -10.76462 -10.70624 -10.59474 -9.12062 -8.23611 -6.24574 1.34865 1.36647 1.48771 2.38898 3.09543 3.11715 3.84079 4.04068 4.13112 4.30935 4.37672 4.41985 4.46057 4.53807 4.65872 4.77134 4.79560 4.89153 4.97207 5.03531 5.06251 5.13254 5.18190 5.18965 5.30744 5.38991 5.45507 5.50477 5.56135 5.68190 5.86207 5.89260 6.29128 6.33725 6.41222 6.83903 7.38507 8.93688 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.039463 B = 0.009282 C = 0.007984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.357010 B = 3015.795340 C = 3506.230397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.079 4.079 3 H 0.066 0.934 4 C -0.107 4.107 5 C 0.059 3.941 6 N -0.558 5.558 7 C 0.029 3.971 8 C 0.065 3.935 9 C -0.089 4.089 10 C -0.051 4.051 11 H 0.039 0.961 12 C -0.011 4.011 13 C -0.515 4.515 14 H 0.029 0.971 15 C -0.002 4.002 16 N -0.957 5.957 17 Si 0.946 3.054 18 H -0.268 1.268 19 H -0.286 1.286 20 H -0.246 1.246 21 H 0.046 0.954 22 H 0.070 0.930 23 H 0.044 0.956 24 H 0.052 0.948 25 H 0.086 0.914 26 H 0.081 0.919 27 H 0.042 0.958 28 H 0.035 0.965 29 H 0.061 0.939 30 H 0.077 0.923 31 H 0.063 0.937 32 H 0.048 0.952 33 H 0.028 0.972 34 H 0.047 0.953 35 H 0.011 0.989 36 H 0.024 0.976 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.606 6.948 -16.596 18.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.098 4.098 3 H 0.085 0.915 4 C -0.145 4.145 5 C -0.067 4.067 6 N -0.282 5.282 7 C -0.118 4.118 8 C -0.064 4.064 9 C -0.127 4.127 10 C -0.069 4.069 11 H 0.058 0.942 12 C -0.048 4.048 13 C -0.554 4.554 14 H 0.047 0.953 15 C -0.197 4.197 16 N -0.599 5.599 17 Si 0.770 3.230 18 H -0.193 1.193 19 H -0.212 1.212 20 H -0.169 1.169 21 H 0.065 0.935 22 H 0.089 0.911 23 H 0.063 0.937 24 H 0.070 0.930 25 H 0.105 0.895 26 H 0.099 0.901 27 H 0.061 0.939 28 H 0.053 0.947 29 H 0.080 0.920 30 H 0.096 0.904 31 H 0.082 0.918 32 H 0.067 0.933 33 H 0.047 0.953 34 H 0.065 0.935 35 H 0.030 0.970 36 H 0.042 0.958 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.392 6.456 -16.237 17.800 hybrid contribution -0.202 0.538 0.732 0.931 sum 3.190 6.994 -15.505 17.306 Atomic orbital electron populations 1.21949 0.95436 1.01344 1.01389 1.20929 0.95466 0.98988 0.94395 0.91538 1.20647 0.95883 1.00400 0.97520 1.21049 0.93402 0.98967 0.93323 1.61500 1.10549 1.44742 1.11449 1.22459 0.88289 1.00521 1.00558 1.21873 0.98646 0.92848 0.93003 1.21784 0.95267 0.99188 0.96480 1.20566 0.93824 0.98552 0.94002 0.94230 1.19911 0.96062 0.95149 0.93659 1.21594 1.06070 1.28323 0.99380 0.95293 1.26020 1.02092 0.96399 0.95179 1.70087 1.40368 1.43580 1.05875 0.85717 0.79528 0.80318 0.77461 1.19292 1.21237 1.16947 0.93504 0.91087 0.93675 0.92961 0.89526 0.90061 0.93939 0.94653 0.91996 0.90445 0.91837 0.93340 0.95343 0.93458 0.97033 0.95802 0.92847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.35 7.74 71.98 0.56 -3.79 16 2 C -0.08 -2.48 2.26 -11.10 -0.03 -2.50 16 3 H 0.07 1.97 7.16 -2.39 -0.02 1.95 16 4 C -0.11 -2.74 4.92 28.92 0.14 -2.60 16 5 C 0.06 1.38 4.96 83.94 0.42 1.80 16 6 N -0.56 -15.59 4.48 -938.16 -4.21 -19.80 16 7 C 0.03 0.63 9.19 127.69 1.17 1.81 16 8 C 0.07 1.95 5.18 87.15 0.45 2.40 16 9 C -0.09 -3.50 4.96 31.39 0.16 -3.35 16 10 C -0.05 -2.07 1.68 -11.17 -0.02 -2.08 16 11 H 0.04 1.79 7.38 -2.39 -0.02 1.78 16 12 C -0.01 -0.52 2.18 29.85 0.06 -0.45 16 13 C -0.52 -30.80 9.06 25.60 0.23 -30.57 16 14 H 0.03 1.92 7.16 -2.91 -0.02 1.90 16 15 C 0.00 -0.09 5.47 84.66 0.46 0.37 16 16 N -0.96 -62.30 13.96 21.45 0.30 -62.00 16 17 Si 0.95 45.91 27.47 68.60 1.88 47.80 16 18 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 19 H -0.29 -13.65 7.11 99.48 0.71 -12.95 16 20 H -0.25 -11.05 6.54 99.48 0.65 -10.40 16 21 H 0.05 1.48 7.69 -2.39 -0.02 1.46 16 22 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 23 H 0.04 1.50 6.42 -2.38 -0.02 1.48 16 24 H 0.05 1.53 7.59 -2.39 -0.02 1.51 16 25 H 0.09 1.76 8.02 -2.39 -0.02 1.74 16 26 H 0.08 1.56 7.68 -2.39 -0.02 1.54 16 27 H 0.04 0.91 7.23 -2.39 -0.02 0.89 16 28 H 0.03 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.06 1.38 8.10 -2.39 -0.02 1.37 16 30 H 0.08 1.45 7.95 -2.39 -0.02 1.43 16 31 H 0.06 1.77 7.55 -2.39 -0.02 1.75 16 32 H 0.05 1.30 6.50 -2.38 -0.02 1.29 16 33 H 0.03 1.29 7.27 -2.39 -0.02 1.28 16 34 H 0.05 1.89 7.94 -2.38 -0.02 1.87 16 35 H 0.01 0.55 6.94 -2.39 -0.02 0.54 16 36 H 0.02 1.13 5.36 -2.39 -0.01 1.11 16 37 H 0.26 15.98 8.31 -92.71 -0.77 15.21 16 Total: -1.00 -68.25 272.82 2.54 -65.71 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: 0.96 Total: 7.26 kcal Atomic # 6 Polarization: -42.58 SS G_CDS: 3.61 Total: -38.97 kcal Atomic # 7 Polarization: -77.89 SS G_CDS: -3.91 Total: -81.80 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 1.88 Total: 47.80 kcal Total: -68.25 2.54 -65.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260760956.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.267 kcal (2) G-P(sol) polarization free energy of solvation -68.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds