Wall clock time and date at job start Mon Mar 30 2020 03:13:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09005 * 108.96419 * 2 1 4 4 C 1.53819 * 108.91371 * 118.76723 * 2 1 3 5 5 C 1.50813 * 111.62241 * 161.55801 * 4 2 1 6 6 N 1.47636 * 108.04841 * 264.94664 * 5 4 2 7 7 C 1.46899 * 110.99775 * 209.65356 * 6 5 4 8 8 C 1.39782 * 114.76203 * 82.79998 * 6 5 4 9 9 C 1.54436 * 111.76835 * 297.72198 * 8 6 5 10 10 C 1.50758 * 109.01901 * 77.40868 * 9 8 6 11 11 H 1.08996 * 108.85646 * 27.78896 * 10 9 8 12 12 C 1.53003 * 108.85270 * 146.17617 * 10 9 8 13 13 C 1.50703 * 109.46875 * 294.99841 * 12 10 9 14 14 H 1.07997 * 120.00292 * 359.97438 * 13 12 10 15 15 C 1.37881 * 119.99720 * 180.02562 * 13 12 10 16 16 N 1.31510 * 119.99900 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 119.99935 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.47124 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.47058 * 119.99674 * 17 15 13 20 20 H 1.48495 * 109.47127 * 240.00275 * 17 15 13 21 21 H 1.09003 * 109.46905 * 178.80766 * 1 2 3 22 22 H 1.08996 * 109.46997 * 298.81457 * 1 2 3 23 23 H 1.09004 * 109.46695 * 58.81462 * 1 2 3 24 24 H 1.08994 * 109.04829 * 41.00996 * 4 2 1 25 25 H 1.09003 * 109.05116 * 282.10890 * 4 2 1 26 26 H 1.09001 * 109.74921 * 145.30791 * 5 4 2 27 27 H 1.09005 * 109.74940 * 24.58162 * 5 4 2 28 28 H 1.08994 * 109.47490 * 63.95527 * 7 6 5 29 29 H 1.09004 * 109.46820 * 183.95551 * 7 6 5 30 30 H 1.09005 * 109.47277 * 303.95198 * 7 6 5 31 31 H 1.09001 * 109.02095 * 58.31237 * 8 6 5 32 32 H 1.09002 * 109.01708 * 177.14009 * 8 6 5 33 33 H 1.08995 * 109.54379 * 197.26668 * 9 8 6 34 34 H 1.08995 * 109.54682 * 317.54526 * 9 8 6 35 35 H 1.08997 * 109.47411 * 54.99715 * 12 10 9 36 36 H 1.08997 * 109.47137 * 174.99931 * 12 10 9 37 37 H 0.97000 * 119.99829 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8843 1.0309 0.0000 4 6 2.0286 -0.7003 1.2755 5 6 3.4670 -1.1346 1.1450 6 7 3.4811 -2.5445 0.7073 7 6 4.6760 -3.2385 1.2059 8 6 3.3313 -2.7315 -0.6698 9 6 1.9699 -2.2053 -1.1745 10 6 2.0315 -0.7025 -1.2774 11 1 3.0635 -0.4041 -1.4615 12 6 1.1711 -0.2522 -2.4596 13 6 1.7682 -0.7717 -3.7421 14 1 2.6712 -1.3634 -3.7166 15 6 1.1620 -0.4905 -4.9482 16 7 0.0627 0.2305 -4.9794 17 14 1.9025 -1.1338 -6.5380 18 1 3.1294 -1.9129 -6.2329 19 1 0.9184 -2.0096 -7.2235 20 1 2.2479 0.0089 -7.4211 21 1 -0.3633 -1.0275 -0.0214 22 1 -0.3633 0.4953 0.9004 23 1 -0.3633 0.5322 -0.8792 24 1 1.4085 -1.5761 1.4661 25 1 1.9395 -0.0129 2.1168 26 1 3.9682 -1.0431 2.1086 27 1 3.9734 -0.5143 0.4054 28 1 4.6487 -3.2722 2.2950 29 1 4.6972 -4.2544 0.8114 30 1 5.5687 -2.7039 0.8812 31 1 4.1310 -2.2034 -1.1891 32 1 3.4060 -3.7956 -0.8939 33 1 1.7560 -2.6295 -2.1555 34 1 1.1858 -2.4910 -0.4733 35 1 0.1608 -0.6446 -2.3441 36 1 1.1366 0.8368 -2.4899 37 1 -0.3639 0.4280 -5.8278 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260760963.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:50 Heat of formation + Delta-G solvation = -34.389538 kcal Electronic energy + Delta-G solvation = -14988.909568 eV Core-core repulsion = 12764.531311 eV Total energy + Delta-G solvation = -2224.378257 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.65690 -37.13147 -34.94728 -33.32346 -30.43341 -29.85806 -26.94086 -25.64623 -24.39525 -23.20839 -21.58196 -19.15884 -18.57256 -16.93916 -16.48857 -16.23673 -15.93194 -15.72407 -14.67394 -14.20694 -14.13803 -13.95191 -13.76804 -13.15246 -12.99235 -12.81765 -12.61729 -12.59457 -12.47522 -12.26517 -12.05315 -11.74397 -11.45222 -11.39568 -10.96178 -10.76843 -10.62536 -10.49875 -9.07922 -8.17067 -6.25645 1.37327 1.37864 1.50510 2.40976 3.11717 3.16678 3.95529 3.98351 4.07587 4.26022 4.29480 4.47151 4.56697 4.61726 4.70707 4.75061 4.86837 4.88879 4.92843 5.04411 5.05779 5.10312 5.17099 5.27565 5.40610 5.41274 5.49882 5.52834 5.60385 5.66138 5.90848 5.96618 6.30032 6.34278 6.52178 6.91334 7.42051 8.94793 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.035065 B = 0.009197 C = 0.007634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.321613 B = 3043.646956 C = 3667.143427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.085 4.085 3 H 0.053 0.947 4 C -0.101 4.101 5 C 0.066 3.934 6 N -0.565 5.565 7 C 0.030 3.970 8 C 0.084 3.916 9 C -0.097 4.097 10 C -0.067 4.067 11 H 0.034 0.966 12 C 0.037 3.963 13 C -0.528 4.528 14 H 0.055 0.945 15 C -0.001 4.001 16 N -0.934 5.934 17 Si 0.957 3.043 18 H -0.263 1.263 19 H -0.278 1.278 20 H -0.280 1.280 21 H 0.048 0.952 22 H 0.066 0.934 23 H 0.033 0.967 24 H 0.070 0.930 25 H 0.079 0.921 26 H 0.093 0.907 27 H 0.026 0.974 28 H 0.082 0.918 29 H 0.069 0.931 30 H 0.022 0.978 31 H 0.001 0.999 32 H 0.073 0.927 33 H 0.054 0.946 34 H 0.064 0.936 35 H 0.000 1.000 36 H -0.021 1.021 37 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.660 -4.699 12.846 15.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.103 4.103 3 H 0.071 0.929 4 C -0.139 4.139 5 C -0.060 4.060 6 N -0.289 5.289 7 C -0.117 4.117 8 C -0.046 4.046 9 C -0.135 4.135 10 C -0.085 4.085 11 H 0.052 0.948 12 C 0.000 4.000 13 C -0.567 4.567 14 H 0.074 0.926 15 C -0.198 4.198 16 N -0.575 5.575 17 Si 0.782 3.218 18 H -0.188 1.188 19 H -0.204 1.204 20 H -0.206 1.206 21 H 0.067 0.933 22 H 0.085 0.915 23 H 0.052 0.948 24 H 0.089 0.911 25 H 0.097 0.903 26 H 0.111 0.889 27 H 0.045 0.955 28 H 0.101 0.899 29 H 0.088 0.912 30 H 0.041 0.959 31 H 0.019 0.981 32 H 0.091 0.909 33 H 0.073 0.927 34 H 0.083 0.917 35 H 0.018 0.982 36 H -0.003 1.003 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 6.165 -4.829 12.916 15.105 hybrid contribution 0.660 0.442 -1.807 1.973 sum 6.824 -4.387 11.110 13.757 Atomic orbital electron populations 1.21831 0.95691 1.01220 1.00812 1.21556 0.95773 0.98487 0.94507 0.92888 1.21397 0.96026 1.00391 0.96107 1.21841 0.97347 0.86764 1.00088 1.58948 1.40700 1.14929 1.14332 1.22408 0.89371 0.98449 1.01464 1.20854 0.95895 1.00163 0.87658 1.21382 0.96881 0.95060 1.00176 1.20924 0.97788 0.95423 0.94390 0.94777 1.19133 0.94698 0.93744 0.92450 1.21720 1.10021 1.32154 0.92761 0.92630 1.25911 0.95454 0.95621 1.02840 1.70104 1.20409 1.40258 1.26734 0.85522 0.78715 0.78214 0.79372 1.18752 1.20387 1.20608 0.93311 0.91457 0.94771 0.91125 0.90261 0.88887 0.95518 0.89884 0.91169 0.95904 0.98092 0.90878 0.92685 0.91701 0.98205 1.00250 0.92995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.84 8.04 71.98 0.58 -4.26 16 2 C -0.08 -2.95 2.53 -10.12 -0.03 -2.97 16 3 H 0.05 1.86 8.14 -2.38 -0.02 1.84 16 4 C -0.10 -2.76 4.78 30.16 0.14 -2.62 16 5 C 0.07 1.74 5.36 85.45 0.46 2.19 16 6 N -0.56 -15.51 4.19 -939.52 -3.94 -19.45 16 7 C 0.03 0.63 9.44 127.69 1.21 1.84 16 8 C 0.08 2.73 4.93 88.07 0.43 3.17 16 9 C -0.10 -3.77 4.90 30.35 0.15 -3.62 16 10 C -0.07 -2.81 1.42 -11.13 -0.02 -2.83 16 11 H 0.03 1.51 6.56 -2.39 -0.02 1.49 16 12 C 0.04 1.96 3.08 29.85 0.09 2.05 16 13 C -0.53 -30.46 7.95 25.60 0.20 -30.26 16 14 H 0.06 3.12 7.44 -2.91 -0.02 3.10 16 15 C 0.00 -0.07 5.46 84.66 0.46 0.40 16 16 N -0.93 -57.89 13.29 21.45 0.28 -57.60 16 17 Si 0.96 45.25 29.54 68.60 2.03 47.27 16 18 H -0.26 -11.92 7.11 99.48 0.71 -11.21 16 19 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 20 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 21 H 0.05 1.70 7.38 -2.39 -0.02 1.68 16 22 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 23 H 0.03 1.40 6.39 -2.38 -0.02 1.38 16 24 H 0.07 2.00 7.10 -2.39 -0.02 1.98 16 25 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 26 H 0.09 1.91 7.82 -2.39 -0.02 1.89 16 27 H 0.03 0.80 6.66 -2.38 -0.02 0.78 16 28 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.07 1.37 7.78 -2.38 -0.02 1.35 16 30 H 0.02 0.47 8.14 -2.38 -0.02 0.45 16 31 H 0.00 0.04 7.54 -2.39 -0.02 0.02 16 32 H 0.07 2.18 7.76 -2.39 -0.02 2.16 16 33 H 0.05 2.43 6.60 -2.39 -0.02 2.42 16 34 H 0.06 2.41 6.32 -2.39 -0.02 2.40 16 35 H 0.00 -0.02 6.85 -2.39 -0.02 -0.04 16 36 H -0.02 -1.23 8.03 -2.39 -0.02 -1.25 16 37 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 Total: -1.00 -64.17 275.45 3.07 -61.11 By element: Atomic # 1 Polarization: 4.57 SS G_CDS: 1.01 Total: 5.58 kcal Atomic # 6 Polarization: -40.59 SS G_CDS: 3.69 Total: -36.91 kcal Atomic # 7 Polarization: -73.40 SS G_CDS: -3.65 Total: -77.05 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.27 kcal Total: -64.17 3.07 -61.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260760963.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.716 kcal (2) G-P(sol) polarization free energy of solvation -64.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds