Wall clock time and date at job start Mon Mar 30 2020 02:58:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09008 * 109.46192 * 2 1 4 4 C 1.53032 * 109.46450 * 240.03294 * 2 1 3 5 5 C 1.53114 * 109.28141 * 180.80368 * 4 2 1 6 6 C 1.53123 * 109.16198 * 57.65126 * 5 4 2 7 7 H 1.09011 * 109.49940 * 62.28508 * 6 5 4 8 8 C 1.52991 * 109.50610 * 182.40446 * 6 5 4 9 9 C 1.50698 * 109.47457 * 294.80372 * 8 6 5 10 10 H 1.07996 * 119.99968 * 359.97438 * 9 8 6 11 11 C 1.37880 * 120.00353 * 179.97438 * 9 8 6 12 12 N 1.31519 * 119.99678 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 120.00212 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.46675 * 0.02562 * 13 11 9 15 15 H 1.48498 * 109.46878 * 119.99725 * 13 11 9 16 16 H 1.48497 * 109.47215 * 240.00243 * 13 11 9 17 17 C 1.53035 * 109.27774 * 302.35270 * 6 5 4 18 18 H 1.09008 * 109.45841 * 299.15478 * 17 6 5 19 19 C 1.53006 * 109.46431 * 179.19276 * 17 6 5 20 20 N 1.46844 * 109.46174 * 119.97666 * 2 1 3 21 21 C 1.46904 * 111.00328 * 305.85678 * 20 2 1 22 22 H 1.09006 * 109.47142 * 300.02078 * 1 2 3 23 23 H 1.09002 * 109.47132 * 60.01951 * 1 2 3 24 24 H 1.09000 * 109.46961 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.50025 * 300.74661 * 4 2 1 26 26 H 1.08996 * 109.50621 * 60.86082 * 4 2 1 27 27 H 1.09000 * 109.52528 * 177.55766 * 5 4 2 28 28 H 1.09001 * 109.52673 * 297.68468 * 5 4 2 29 29 H 1.09004 * 109.47456 * 54.80603 * 8 6 5 30 30 H 1.09003 * 109.47348 * 174.80604 * 8 6 5 31 31 H 0.96996 * 119.99510 * 179.97438 * 12 11 9 32 32 H 1.08995 * 109.46828 * 299.94676 * 19 17 6 33 33 H 1.09002 * 109.46726 * 59.93969 * 19 17 6 34 34 H 1.08992 * 109.47393 * 179.97438 * 19 17 6 35 35 H 1.09005 * 109.47069 * 295.79201 * 21 20 2 36 36 H 1.09002 * 109.46841 * 55.78558 * 21 20 2 37 37 H 1.08997 * 109.47281 * 175.79311 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0399 -0.7207 -1.2500 5 6 3.5709 -0.7359 -1.2356 6 6 4.0548 -1.4187 0.0466 7 1 3.7124 -2.4535 0.0593 8 6 5.5835 -1.3848 0.0978 9 6 6.1424 -2.2175 -1.0271 10 1 5.4740 -2.7209 -1.7099 11 6 7.5069 -2.3367 -1.1845 12 7 8.3208 -1.7241 -0.3527 13 14 8.1997 -3.3683 -2.5793 14 1 7.0829 -3.9477 -3.3682 15 1 9.0354 -2.5130 -3.4597 16 1 9.0312 -4.4637 -2.0192 17 6 3.4864 -0.6777 1.2590 18 1 3.8403 0.3533 1.2532 19 6 3.9510 -1.3687 2.5427 20 7 2.0192 -0.6918 1.1993 21 6 1.4372 -0.1107 2.4166 22 1 -0.3634 0.5142 0.8898 23 1 -0.3633 0.5135 -0.8902 24 1 -0.3633 -1.0277 0.0005 25 1 1.6659 -1.7445 -1.2577 26 1 1.6895 -0.1980 -2.1399 27 1 3.9379 -1.2860 -2.1021 28 1 3.9457 0.2872 -1.2683 29 1 5.9279 -0.3559 -0.0060 30 1 5.9242 -1.7875 1.0517 31 1 9.2808 -1.8083 -0.4632 32 1 3.5970 -2.3995 2.5490 33 1 5.0401 -1.3583 2.5871 34 1 3.5466 -0.8408 3.4063 35 1 1.7728 0.9209 2.5231 36 1 0.3497 -0.1335 2.3460 37 1 1.7573 -0.6882 3.2838 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260822287.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:57 Heat of formation + Delta-G solvation = -37.195182 kcal Electronic energy + Delta-G solvation = -14905.723472 eV Core-core repulsion = 12681.223553 eV Total energy + Delta-G solvation = -2224.499919 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.61296 -36.26029 -34.52136 -34.22106 -30.15284 -29.53327 -27.12373 -26.65079 -24.12907 -22.27640 -21.26234 -20.48015 -18.50709 -16.76132 -16.64663 -16.02765 -15.55474 -15.42082 -14.79309 -14.20262 -14.04103 -13.91841 -13.70938 -13.19322 -13.02816 -12.92250 -12.58724 -12.48159 -12.46443 -12.36820 -12.25127 -11.85070 -11.57459 -11.42092 -11.27625 -10.79833 -10.65444 -10.47881 -9.17683 -8.17261 -6.25872 1.39197 1.39609 1.52690 2.41867 2.99774 3.16077 3.90642 3.97958 4.02204 4.11455 4.40290 4.44784 4.52325 4.59748 4.66161 4.71041 4.77308 4.89731 4.92184 4.95754 5.05602 5.11002 5.14427 5.18915 5.26231 5.34356 5.40027 5.41873 5.51215 5.60547 5.84137 5.90309 6.20963 6.32133 6.36906 6.90177 7.42021 8.95010 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.045748 B = 0.008115 C = 0.007182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.904558 B = 3449.662078 C = 3897.930312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.078 3.922 3 H 0.027 0.973 4 C -0.104 4.104 5 C -0.105 4.105 6 C -0.062 4.062 7 H 0.053 0.947 8 C 0.035 3.965 9 C -0.527 4.527 10 H 0.058 0.942 11 C -0.002 4.002 12 N -0.935 5.935 13 Si 0.960 3.040 14 H -0.263 1.263 15 H -0.280 1.280 16 H -0.279 1.279 17 C 0.093 3.907 18 H 0.017 0.983 19 C -0.139 4.139 20 N -0.540 5.540 21 C 0.017 3.983 22 H 0.066 0.934 23 H 0.072 0.928 24 H 0.062 0.938 25 H 0.065 0.935 26 H 0.079 0.921 27 H 0.052 0.948 28 H 0.038 0.962 29 H -0.018 1.018 30 H 0.000 1.000 31 H 0.262 0.738 32 H 0.059 0.941 33 H 0.046 0.954 34 H 0.071 0.929 35 H 0.019 0.981 36 H 0.089 0.911 37 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.871 3.196 2.129 15.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.031 4.031 3 H 0.045 0.955 4 C -0.142 4.142 5 C -0.143 4.143 6 C -0.081 4.081 7 H 0.071 0.929 8 C -0.003 4.003 9 C -0.565 4.565 10 H 0.076 0.924 11 C -0.199 4.199 12 N -0.576 5.576 13 Si 0.785 3.215 14 H -0.187 1.187 15 H -0.205 1.205 16 H -0.204 1.204 17 C -0.015 4.015 18 H 0.035 0.965 19 C -0.196 4.196 20 N -0.265 5.265 21 C -0.131 4.131 22 H 0.085 0.915 23 H 0.091 0.909 24 H 0.081 0.919 25 H 0.084 0.916 26 H 0.098 0.902 27 H 0.071 0.929 28 H 0.057 0.943 29 H 0.000 1.000 30 H 0.019 0.981 31 H 0.070 0.930 32 H 0.078 0.922 33 H 0.065 0.935 34 H 0.090 0.910 35 H 0.038 0.962 36 H 0.107 0.893 37 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -14.866 2.740 2.137 15.267 hybrid contribution 1.428 0.466 -0.510 1.587 sum -13.438 3.205 1.627 13.910 Atomic orbital electron populations 1.21864 0.92196 1.02759 1.02637 1.21690 0.96686 0.94524 0.90158 0.95501 1.21634 0.94205 1.01209 0.97167 1.21489 0.95819 0.99102 0.97852 1.21061 0.95298 0.98188 0.93589 0.92871 1.19056 0.91141 0.94451 0.95642 1.21662 0.91817 1.29647 1.13398 0.92365 1.25929 0.97772 0.97205 0.98954 1.70109 1.03322 1.45135 1.39061 0.85475 0.78451 0.78484 0.79130 1.18658 1.20535 1.20443 1.21513 0.87249 0.96613 0.96113 0.96507 1.21867 1.00507 1.00988 0.96275 1.61994 1.06175 1.55326 1.03032 1.22574 1.01051 0.96984 0.92458 0.91469 0.90942 0.91871 0.91586 0.90236 0.92894 0.94306 0.99980 0.98134 0.92962 0.92233 0.93546 0.91015 0.96249 0.89268 0.90740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.76 8.77 71.98 0.63 -2.13 16 2 C 0.08 2.14 2.44 44.94 0.11 2.25 16 3 H 0.03 0.79 8.14 -2.38 -0.02 0.77 16 4 C -0.10 -3.15 5.37 30.64 0.16 -2.99 16 5 C -0.10 -4.12 5.05 30.67 0.16 -3.96 16 6 C -0.06 -2.70 1.82 -10.74 -0.02 -2.72 16 7 H 0.05 2.40 8.14 -2.38 -0.02 2.38 16 8 C 0.03 1.86 4.25 29.84 0.13 1.98 16 9 C -0.53 -30.41 8.44 25.60 0.22 -30.19 16 10 H 0.06 3.26 7.07 -2.91 -0.02 3.24 16 11 C 0.00 -0.09 5.46 84.65 0.46 0.37 16 12 N -0.94 -57.86 13.29 21.45 0.28 -57.57 16 13 Si 0.96 45.13 29.54 68.60 2.03 47.16 16 14 H -0.26 -11.80 7.11 99.48 0.71 -11.10 16 15 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 16 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 17 C 0.09 3.44 1.96 44.94 0.09 3.53 16 18 H 0.02 0.67 8.14 -2.38 -0.02 0.65 16 19 C -0.14 -4.81 8.44 71.98 0.61 -4.20 16 20 N -0.54 -16.37 4.58 -871.90 -3.99 -20.36 16 21 C 0.02 0.40 8.64 127.69 1.10 1.50 16 22 H 0.07 1.18 6.23 -2.38 -0.01 1.16 16 23 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 24 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 25 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 26 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 27 H 0.05 2.23 7.05 -2.39 -0.02 2.21 16 28 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 29 H -0.02 -1.08 8.14 -2.39 -0.02 -1.09 16 30 H 0.00 0.02 6.20 -2.39 -0.01 0.01 16 31 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 32 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 33 H 0.05 1.82 6.34 -2.39 -0.02 1.81 16 34 H 0.07 2.04 6.32 -2.39 -0.02 2.03 16 35 H 0.02 0.46 8.14 -2.38 -0.02 0.44 16 36 H 0.09 1.72 5.96 -2.39 -0.01 1.71 16 37 H 0.07 1.70 6.21 -2.39 -0.01 1.68 16 Total: -1.00 -64.14 278.65 2.97 -61.17 By element: Atomic # 1 Polarization: 5.15 SS G_CDS: 1.01 Total: 6.16 kcal Atomic # 6 Polarization: -40.19 SS G_CDS: 3.65 Total: -36.55 kcal Atomic # 7 Polarization: -74.23 SS G_CDS: -3.71 Total: -77.94 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Total: -64.14 2.97 -61.17 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260822287.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.972 kcal (2) G-P(sol) polarization free energy of solvation -64.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds