Wall clock time and date at job start Mon Mar 30 2020 03:02:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09004 * 108.82501 * 2 1 4 4 C 1.54169 * 108.76891 * 241.54895 * 2 1 3 5 5 C 1.53824 * 111.96831 * 197.73412 * 4 2 1 6 6 C 1.50826 * 111.61785 * 319.04325 * 5 4 2 7 7 H 1.08996 * 109.74683 * 335.42213 * 6 5 4 8 8 C 1.53003 * 109.74589 * 214.74672 * 6 5 4 9 9 C 1.50703 * 109.47325 * 65.45865 * 8 6 5 10 10 H 1.08006 * 119.99744 * 5.14506 * 9 8 6 11 11 C 1.37870 * 120.00235 * 185.14417 * 9 8 6 12 12 N 1.31515 * 120.00104 * 179.97438 * 11 9 8 13 13 Si 1.86803 * 120.00184 * 0.02562 * 11 9 8 14 14 H 1.48501 * 109.47132 * 89.99448 * 13 11 9 15 15 H 1.48493 * 109.47309 * 209.99990 * 13 11 9 16 16 H 1.48504 * 109.46732 * 329.99852 * 13 11 9 17 17 N 1.47619 * 108.03966 * 95.06182 * 6 5 4 18 18 C 1.46907 * 111.00072 * 150.32439 * 17 6 5 19 19 C 1.39779 * 114.76562 * 277.18061 * 17 6 5 20 20 C 1.50751 * 108.85422 * 118.50669 * 2 1 3 21 21 H 1.08998 * 109.46820 * 301.49341 * 1 2 3 22 22 H 1.09005 * 109.46978 * 61.49312 * 1 2 3 23 23 H 1.08993 * 109.46807 * 181.49035 * 1 2 3 24 24 H 1.09004 * 108.98487 * 318.36697 * 4 2 1 25 25 H 1.08993 * 108.98590 * 77.09138 * 4 2 1 26 26 H 1.09001 * 109.05382 * 79.59123 * 5 4 2 27 27 H 1.08991 * 109.05314 * 198.49274 * 5 4 2 28 28 H 1.09001 * 109.47050 * 185.45724 * 8 6 5 29 29 H 1.09000 * 109.47050 * 305.46422 * 8 6 5 30 30 H 0.97001 * 120.00292 * 179.97438 * 12 11 9 31 31 H 1.09004 * 109.47150 * 181.24831 * 18 17 6 32 32 H 1.09004 * 109.46779 * 301.24754 * 18 17 6 33 33 H 1.09002 * 109.47124 * 61.24543 * 18 17 6 34 34 H 1.08998 * 109.02519 * 301.69070 * 19 17 6 35 35 H 1.09004 * 109.02214 * 182.87017 * 19 17 6 36 36 H 1.08994 * 109.54277 * 93.84674 * 20 2 1 37 37 H 1.09002 * 109.54545 * 333.57830 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8818 1.0317 0.0000 4 6 2.0261 -0.6954 -1.2834 5 6 3.4978 -1.1288 -1.1711 6 6 4.3358 -0.0780 -0.4866 7 1 3.8677 0.8995 -0.6028 8 6 5.7379 -0.0556 -1.0985 9 6 5.6524 0.3942 -2.5343 10 1 4.7069 0.7190 -2.9430 11 6 6.7811 0.3912 -3.3261 12 7 6.7063 0.7833 -4.5792 13 14 8.4163 -0.1711 -2.6194 14 1 8.5687 -1.6336 -2.8274 15 1 9.5233 0.5442 -3.3034 16 1 8.4566 0.1290 -1.1656 17 7 4.4211 -0.4231 0.9461 18 6 5.6840 0.0513 1.5276 19 6 3.3292 -0.0090 1.7143 20 6 2.0173 -0.6809 1.2537 21 1 -0.3633 0.5369 0.8763 22 1 -0.3633 0.4905 -0.9031 23 1 -0.3633 -1.0273 0.0267 24 1 1.4108 -1.5755 -1.4703 25 1 1.9222 -0.0074 -2.1223 26 1 3.5532 -2.0555 -0.6000 27 1 3.8943 -1.3043 -2.1710 28 1 6.3679 0.6354 -0.5382 29 1 6.1687 -1.0560 -1.0563 30 1 7.5004 0.7815 -5.1362 31 1 5.7307 -0.2355 2.5782 32 1 6.5213 -0.3955 0.9915 33 1 5.7371 1.1369 1.4446 34 1 3.2238 1.0725 1.6280 35 1 3.5118 -0.2645 2.7581 36 1 2.2003 -1.7355 1.0482 37 1 1.2646 -0.5858 2.0363 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260845857.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:01 Heat of formation + Delta-G solvation = -11.807169 kcal Electronic energy + Delta-G solvation = -15037.196925 eV Core-core repulsion = 12813.797913 eV Total energy + Delta-G solvation = -2223.399012 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.33891 -35.27460 -33.58119 -31.86215 -29.16636 -28.47042 -25.64592 -24.24716 -22.71115 -21.43950 -19.80399 -18.22798 -16.92302 -15.32605 -15.00967 -14.70966 -14.54980 -13.84296 -13.10005 -13.05823 -12.74408 -12.64663 -12.25216 -12.09329 -11.71898 -11.44113 -11.12397 -10.97415 -10.83085 -10.48842 -10.30225 -10.15396 -9.93530 -9.79957 -9.56850 -9.44195 -9.05927 -8.52097 -7.58880 -6.03388 -4.00605 3.31734 3.39165 3.42468 4.46111 4.51541 5.06048 5.11753 5.20133 5.30517 5.46596 5.68778 5.76339 5.83373 5.85010 5.88052 5.97273 6.00363 6.09558 6.13761 6.26285 6.33402 6.36516 6.42125 6.48258 6.62770 6.69385 6.77901 7.01467 7.16472 7.22899 7.43868 7.64133 7.87075 8.08459 8.55561 9.01802 9.59276 11.09818 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.037973 B = 0.009624 C = 0.008077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.182493 B = 2908.749411 C = 3465.737948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.095 4.095 3 H 0.062 0.938 4 C -0.110 4.110 5 C -0.108 4.108 6 C 0.112 3.888 7 H 0.041 0.959 8 C -0.013 4.013 9 C -0.515 4.515 10 H 0.073 0.927 11 C 0.067 3.933 12 N -0.903 5.903 13 Si 0.878 3.122 14 H -0.277 1.277 15 H -0.289 1.289 16 H -0.267 1.267 17 N -0.563 5.563 18 C 0.032 3.968 19 C 0.079 3.921 20 C -0.110 4.110 21 H 0.048 0.952 22 H 0.051 0.949 23 H 0.051 0.949 24 H 0.051 0.949 25 H 0.057 0.943 26 H 0.059 0.941 27 H 0.083 0.917 28 H 0.018 0.982 29 H 0.020 0.980 30 H 0.262 0.738 31 H 0.051 0.949 32 H 0.074 0.926 33 H 0.021 0.979 34 H 0.011 0.989 35 H 0.059 0.941 36 H 0.072 0.928 37 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.785 -2.565 11.216 13.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.113 4.113 3 H 0.081 0.919 4 C -0.147 4.147 5 C -0.146 4.146 6 C 0.006 3.994 7 H 0.059 0.941 8 C -0.051 4.051 9 C -0.553 4.553 10 H 0.091 0.909 11 C -0.134 4.134 12 N -0.542 5.542 13 Si 0.706 3.294 14 H -0.203 1.203 15 H -0.215 1.215 16 H -0.191 1.191 17 N -0.287 5.287 18 C -0.116 4.116 19 C -0.051 4.051 20 C -0.148 4.148 21 H 0.067 0.933 22 H 0.070 0.930 23 H 0.070 0.930 24 H 0.070 0.930 25 H 0.076 0.924 26 H 0.077 0.923 27 H 0.102 0.898 28 H 0.036 0.964 29 H 0.038 0.962 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.093 0.907 33 H 0.040 0.960 34 H 0.029 0.971 35 H 0.077 0.923 36 H 0.091 0.909 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -7.706 -3.003 11.072 13.820 hybrid contribution 0.889 0.655 0.190 1.121 sum -6.817 -2.347 11.262 13.372 Atomic orbital electron populations 1.21933 0.96012 1.01244 1.01065 1.21044 0.94758 1.00110 0.95415 0.91910 1.21967 0.96998 0.99491 0.96272 1.21427 0.92792 0.98358 1.02034 1.21281 0.98256 0.96359 0.83538 0.94125 1.19869 0.91854 0.96692 0.96644 1.21060 0.96935 1.43578 0.93723 0.90856 1.24989 0.98862 0.94863 0.94651 1.69911 1.29513 1.48233 1.06557 0.86801 0.83846 0.79044 0.79716 1.20256 1.21514 1.19144 1.58979 1.01953 1.63882 1.03921 1.22344 0.93012 0.97807 0.98411 1.20878 0.91377 0.96198 0.96640 1.21533 0.95707 1.01026 0.96516 0.93282 0.93028 0.92989 0.92997 0.92438 0.92261 0.89815 0.96432 0.96177 0.92781 0.93003 0.90697 0.95995 0.97079 0.92287 0.90882 0.92174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 8.79 37.16 0.33 -1.41 16 2 C -0.09 -1.38 2.21 -91.13 -0.20 -1.58 16 3 H 0.06 1.00 6.58 -51.93 -0.34 0.66 16 4 C -0.11 -1.80 5.28 -25.69 -0.14 -1.94 16 5 C -0.11 -2.08 4.82 -27.39 -0.13 -2.21 16 6 C 0.11 2.29 1.88 -68.41 -0.13 2.16 16 7 H 0.04 0.89 6.66 -51.93 -0.35 0.54 16 8 C -0.01 -0.31 2.30 -27.88 -0.06 -0.37 16 9 C -0.51 -14.45 8.47 -34.44 -0.29 -14.74 16 10 H 0.07 2.21 7.93 -52.48 -0.42 1.80 16 11 C 0.07 1.95 5.47 -17.82 -0.10 1.86 16 12 N -0.90 -27.72 13.96 55.43 0.77 -26.95 16 13 Si 0.88 21.78 27.37 -169.99 -4.65 17.13 16 14 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 15 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 16 H -0.27 -6.35 6.69 56.52 0.38 -5.97 16 17 N -0.56 -10.06 4.17 -240.25 -1.00 -11.06 16 18 C 0.03 0.54 8.31 60.07 0.50 1.04 16 19 C 0.08 1.21 4.93 -6.75 -0.03 1.17 16 20 C -0.11 -1.52 5.16 -27.11 -0.14 -1.66 16 21 H 0.05 0.53 8.08 -51.93 -0.42 0.11 16 22 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.05 0.77 7.98 -51.93 -0.41 0.36 16 25 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 26 H 0.06 1.10 7.26 -51.93 -0.38 0.72 16 27 H 0.08 1.83 6.76 -51.93 -0.35 1.48 16 28 H 0.02 0.42 5.64 -51.93 -0.29 0.13 16 29 H 0.02 0.49 7.19 -51.93 -0.37 0.11 16 30 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 31 H 0.05 0.74 7.88 -51.93 -0.41 0.33 16 32 H 0.07 1.37 6.30 -51.93 -0.33 1.04 16 33 H 0.02 0.37 7.97 -51.93 -0.41 -0.04 16 34 H 0.01 0.18 7.55 -51.93 -0.39 -0.21 16 35 H 0.06 0.81 7.83 -51.93 -0.41 0.40 16 36 H 0.07 1.06 7.11 -51.93 -0.37 0.70 16 37 H 0.06 0.71 7.68 -51.93 -0.40 0.31 16 LS Contribution 273.15 15.07 4.12 4.12 Total: -1.00 -29.29 273.15 -7.64 -36.93 By element: Atomic # 1 Polarization: 4.00 SS G_CDS: -6.47 Total: -2.47 kcal Atomic # 6 Polarization: -17.29 SS G_CDS: -0.40 Total: -17.69 kcal Atomic # 7 Polarization: -37.78 SS G_CDS: -0.23 Total: -38.01 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.65 Total: 17.13 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -29.29 -7.64 -36.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260845857.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.122 kcal (2) G-P(sol) polarization free energy of solvation -29.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds