Wall clock time and date at job start Mon Mar 30 2020 03:02:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09004 * 108.82501 * 2 1 4 4 C 1.54169 * 108.76891 * 241.54895 * 2 1 3 5 5 C 1.53824 * 111.96831 * 197.73412 * 4 2 1 6 6 C 1.50826 * 111.61785 * 319.04325 * 5 4 2 7 7 H 1.08996 * 109.74683 * 335.42213 * 6 5 4 8 8 C 1.53003 * 109.74589 * 214.74672 * 6 5 4 9 9 C 1.50703 * 109.47325 * 65.45865 * 8 6 5 10 10 H 1.08006 * 119.99744 * 5.14506 * 9 8 6 11 11 C 1.37870 * 120.00235 * 185.14417 * 9 8 6 12 12 N 1.31515 * 120.00104 * 179.97438 * 11 9 8 13 13 Si 1.86803 * 120.00184 * 0.02562 * 11 9 8 14 14 H 1.48501 * 109.47132 * 89.99448 * 13 11 9 15 15 H 1.48493 * 109.47309 * 209.99990 * 13 11 9 16 16 H 1.48504 * 109.46732 * 329.99852 * 13 11 9 17 17 N 1.47619 * 108.03966 * 95.06182 * 6 5 4 18 18 C 1.46907 * 111.00072 * 150.32439 * 17 6 5 19 19 C 1.39779 * 114.76562 * 277.18061 * 17 6 5 20 20 C 1.50751 * 108.85422 * 118.50669 * 2 1 3 21 21 H 1.08998 * 109.46820 * 301.49341 * 1 2 3 22 22 H 1.09005 * 109.46978 * 61.49312 * 1 2 3 23 23 H 1.08993 * 109.46807 * 181.49035 * 1 2 3 24 24 H 1.09004 * 108.98487 * 318.36697 * 4 2 1 25 25 H 1.08993 * 108.98590 * 77.09138 * 4 2 1 26 26 H 1.09001 * 109.05382 * 79.59123 * 5 4 2 27 27 H 1.08991 * 109.05314 * 198.49274 * 5 4 2 28 28 H 1.09001 * 109.47050 * 185.45724 * 8 6 5 29 29 H 1.09000 * 109.47050 * 305.46422 * 8 6 5 30 30 H 0.97001 * 120.00292 * 179.97438 * 12 11 9 31 31 H 1.09004 * 109.47150 * 181.24831 * 18 17 6 32 32 H 1.09004 * 109.46779 * 301.24754 * 18 17 6 33 33 H 1.09002 * 109.47124 * 61.24543 * 18 17 6 34 34 H 1.08998 * 109.02519 * 301.69070 * 19 17 6 35 35 H 1.09004 * 109.02214 * 182.87017 * 19 17 6 36 36 H 1.08994 * 109.54277 * 93.84674 * 20 2 1 37 37 H 1.09002 * 109.54545 * 333.57830 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8818 1.0317 0.0000 4 6 2.0261 -0.6954 -1.2834 5 6 3.4978 -1.1288 -1.1711 6 6 4.3358 -0.0780 -0.4866 7 1 3.8677 0.8995 -0.6028 8 6 5.7379 -0.0556 -1.0985 9 6 5.6524 0.3942 -2.5343 10 1 4.7069 0.7190 -2.9430 11 6 6.7811 0.3912 -3.3261 12 7 6.7063 0.7833 -4.5792 13 14 8.4163 -0.1711 -2.6194 14 1 8.5687 -1.6336 -2.8274 15 1 9.5233 0.5442 -3.3034 16 1 8.4566 0.1290 -1.1656 17 7 4.4211 -0.4231 0.9461 18 6 5.6840 0.0513 1.5276 19 6 3.3292 -0.0090 1.7143 20 6 2.0173 -0.6809 1.2537 21 1 -0.3633 0.5369 0.8763 22 1 -0.3633 0.4905 -0.9031 23 1 -0.3633 -1.0273 0.0267 24 1 1.4108 -1.5755 -1.4703 25 1 1.9222 -0.0074 -2.1223 26 1 3.5532 -2.0555 -0.6000 27 1 3.8943 -1.3043 -2.1710 28 1 6.3679 0.6354 -0.5382 29 1 6.1687 -1.0560 -1.0563 30 1 7.5004 0.7815 -5.1362 31 1 5.7307 -0.2355 2.5782 32 1 6.5213 -0.3955 0.9915 33 1 5.7371 1.1369 1.4446 34 1 3.2238 1.0725 1.6280 35 1 3.5118 -0.2645 2.7581 36 1 2.2003 -1.7355 1.0482 37 1 1.2646 -0.5858 2.0363 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260845857.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:01 Heat of formation + Delta-G solvation = -30.076929 kcal Electronic energy + Delta-G solvation = -15037.989161 eV Core-core repulsion = 12813.797913 eV Total energy + Delta-G solvation = -2224.191248 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.74587 -36.58931 -35.41731 -33.75548 -30.66421 -29.94151 -27.13541 -25.80619 -24.02747 -23.14617 -21.20821 -19.71086 -19.04177 -16.74577 -16.49116 -16.35499 -15.91947 -15.57395 -14.76477 -14.55033 -14.26586 -13.97485 -13.73872 -13.50765 -13.08296 -12.96255 -12.59855 -12.54817 -12.29892 -12.02410 -11.90855 -11.73754 -11.54342 -11.25733 -11.13088 -11.01917 -10.97613 -10.74213 -9.03442 -8.28583 -6.31237 1.35066 1.35777 1.47836 2.35648 3.06541 3.11906 3.84698 3.94128 4.00632 4.24066 4.31726 4.38145 4.52330 4.60474 4.63642 4.72437 4.77271 4.77975 4.89090 4.97531 5.05166 5.09255 5.12282 5.17881 5.22220 5.28849 5.40432 5.45203 5.51822 5.59378 5.65405 5.72170 6.16992 6.38212 6.67367 6.75738 7.32149 8.87977 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.037973 B = 0.009624 C = 0.008077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.182493 B = 2908.749411 C = 3465.737948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.093 4.093 3 H 0.042 0.958 4 C -0.107 4.107 5 C -0.103 4.103 6 C 0.119 3.881 7 H 0.020 0.980 8 C -0.005 4.005 9 C -0.519 4.519 10 H 0.033 0.967 11 C 0.006 3.994 12 N -0.950 5.950 13 Si 0.947 3.053 14 H -0.267 1.267 15 H -0.284 1.284 16 H -0.248 1.248 17 N -0.562 5.562 18 C 0.029 3.971 19 C 0.072 3.928 20 C -0.104 4.104 21 H 0.066 0.934 22 H 0.047 0.953 23 H 0.064 0.936 24 H 0.071 0.929 25 H 0.035 0.965 26 H 0.070 0.930 27 H 0.046 0.954 28 H 0.020 0.980 29 H 0.021 0.979 30 H 0.265 0.735 31 H 0.086 0.914 32 H 0.059 0.941 33 H 0.015 0.985 34 H 0.004 0.996 35 H 0.086 0.914 36 H 0.070 0.930 37 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.024 -3.594 13.943 16.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.111 4.111 3 H 0.061 0.939 4 C -0.144 4.144 5 C -0.141 4.141 6 C 0.013 3.987 7 H 0.038 0.962 8 C -0.043 4.043 9 C -0.557 4.557 10 H 0.051 0.949 11 C -0.190 4.190 12 N -0.591 5.591 13 Si 0.770 3.230 14 H -0.192 1.192 15 H -0.210 1.210 16 H -0.172 1.172 17 N -0.286 5.286 18 C -0.119 4.119 19 C -0.058 4.058 20 C -0.142 4.142 21 H 0.085 0.915 22 H 0.066 0.934 23 H 0.083 0.917 24 H 0.090 0.910 25 H 0.054 0.946 26 H 0.088 0.912 27 H 0.064 0.936 28 H 0.038 0.962 29 H 0.039 0.961 30 H 0.074 0.926 31 H 0.104 0.896 32 H 0.078 0.922 33 H 0.033 0.967 34 H 0.022 0.978 35 H 0.104 0.896 36 H 0.088 0.912 37 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -7.962 -4.031 13.822 16.453 hybrid contribution 0.898 1.015 -0.685 1.519 sum -7.064 -3.016 13.137 15.218 Atomic orbital electron populations 1.21880 0.93627 1.02371 1.01799 1.21010 0.96764 0.98640 0.94729 0.93923 1.21930 0.95430 1.00016 0.97068 1.21314 0.94397 0.98565 0.99780 1.21016 0.96068 0.95784 0.85879 0.96233 1.19757 0.94195 0.96224 0.94104 1.21308 0.95409 1.43015 0.96010 0.94887 1.25931 1.03165 0.95041 0.94906 1.70062 1.30850 1.49967 1.08230 0.85711 0.78538 0.78885 0.79845 1.19240 1.21021 1.17166 1.59021 1.03403 1.63820 1.02365 1.22404 0.92010 0.97278 1.00166 1.21063 0.91151 0.95944 0.97601 1.21531 0.95665 1.00311 0.96689 0.91521 0.93380 0.91669 0.91045 0.94567 0.91159 0.93552 0.96213 0.96086 0.92571 0.89560 0.92170 0.96689 0.97839 0.89557 0.91150 0.89162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.98 8.79 71.99 0.63 -2.34 16 2 C -0.09 -2.56 2.21 -11.12 -0.02 -2.58 16 3 H 0.04 1.34 6.58 -2.39 -0.02 1.33 16 4 C -0.11 -3.51 5.28 31.27 0.17 -3.34 16 5 C -0.10 -4.00 4.82 30.17 0.15 -3.85 16 6 C 0.12 4.93 1.88 44.07 0.08 5.02 16 7 H 0.02 0.89 6.66 -2.39 -0.02 0.87 16 8 C -0.01 -0.25 2.30 29.85 0.07 -0.18 16 9 C -0.52 -30.27 8.47 25.60 0.22 -30.06 16 10 H 0.03 2.13 7.93 -2.91 -0.02 2.10 16 11 C 0.01 0.37 5.47 84.65 0.46 0.83 16 12 N -0.95 -60.26 13.96 21.44 0.30 -59.96 16 13 Si 0.95 45.00 27.37 68.60 1.88 46.87 16 14 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 15 H -0.28 -13.24 7.11 99.48 0.71 -12.54 16 16 H -0.25 -10.95 6.69 99.48 0.67 -10.29 16 17 N -0.56 -19.04 4.17 -914.02 -3.81 -22.85 16 18 C 0.03 0.91 8.31 127.69 1.06 1.97 16 19 C 0.07 1.99 4.93 88.07 0.43 2.42 16 20 C -0.10 -2.55 5.16 30.35 0.16 -2.40 16 21 H 0.07 1.21 8.08 -2.39 -0.02 1.19 16 22 H 0.05 1.05 8.14 -2.38 -0.02 1.03 16 23 H 0.06 1.23 8.14 -2.39 -0.02 1.22 16 24 H 0.07 2.05 7.98 -2.38 -0.02 2.03 16 25 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 26 H 0.07 2.55 7.26 -2.39 -0.02 2.53 16 27 H 0.05 2.12 6.76 -2.39 -0.02 2.11 16 28 H 0.02 0.94 5.64 -2.39 -0.01 0.93 16 29 H 0.02 1.00 7.19 -2.39 -0.02 0.99 16 30 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 31 H 0.09 2.13 7.88 -2.39 -0.02 2.11 16 32 H 0.06 2.07 6.30 -2.39 -0.02 2.05 16 33 H 0.01 0.48 7.97 -2.39 -0.02 0.46 16 34 H 0.00 0.11 7.55 -2.39 -0.02 0.09 16 35 H 0.09 1.98 7.83 -2.39 -0.02 1.96 16 36 H 0.07 1.81 7.11 -2.39 -0.02 1.79 16 37 H 0.09 1.71 7.68 -2.39 -0.02 1.69 16 Total: -1.00 -64.86 273.15 2.74 -62.11 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: 0.97 Total: 8.33 kcal Atomic # 6 Polarization: -37.92 SS G_CDS: 3.40 Total: -34.52 kcal Atomic # 7 Polarization: -79.30 SS G_CDS: -3.51 Total: -82.80 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 1.88 Total: 46.87 kcal Total: -64.86 2.74 -62.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260845857.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.038 kcal (2) G-P(sol) polarization free energy of solvation -64.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds