Wall clock time and date at job start Mon Mar 30 2020 03:02:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.57677 * 2 1 4 4 C 1.50464 * 109.57491 * 120.25509 * 2 1 3 5 5 C 1.54293 * 113.03167 * 211.96111 * 4 2 1 6 6 C 1.54061 * 112.29130 * 318.30471 * 5 4 2 7 7 H 1.09008 * 108.98197 * 79.47487 * 6 5 4 8 8 C 1.52996 * 108.98002 * 198.26909 * 6 5 4 9 9 C 1.50697 * 109.47158 * 298.07771 * 8 6 5 10 10 H 1.08002 * 119.99973 * 354.92164 * 9 8 6 11 11 C 1.37878 * 120.00177 * 174.92288 * 9 8 6 12 12 N 1.31517 * 119.99973 * 0.02562 * 11 9 8 13 13 Si 1.86804 * 120.00240 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47390 * 180.02562 * 13 11 9 15 15 H 1.48500 * 109.47194 * 59.99913 * 13 11 9 16 16 H 1.48507 * 109.46999 * 300.00201 * 13 11 9 17 17 N 1.44269 * 111.91844 * 318.87202 * 6 5 4 18 18 C 1.46894 * 111.00344 * 219.35297 * 17 6 5 19 19 C 1.47910 * 109.40972 * 96.53075 * 17 6 5 20 20 C 1.45859 * 112.86037 * 276.65772 * 19 17 6 21 21 H 1.09001 * 109.46539 * 299.74590 * 1 2 3 22 22 H 1.08994 * 109.47421 * 59.74084 * 1 2 3 23 23 H 1.08999 * 109.47204 * 179.74971 * 1 2 3 24 24 H 1.09000 * 108.77215 * 91.05115 * 4 2 1 25 25 H 1.08991 * 108.77210 * 332.87899 * 4 2 1 26 26 H 1.09001 * 108.91823 * 197.57770 * 5 4 2 27 27 H 1.09006 * 108.91297 * 79.02816 * 5 4 2 28 28 H 1.09004 * 109.47601 * 178.08243 * 8 6 5 29 29 H 1.08998 * 109.47435 * 58.08170 * 8 6 5 30 30 H 0.97003 * 119.99894 * 0.02562 * 12 11 9 31 31 H 1.09007 * 109.47063 * 64.65801 * 18 17 6 32 32 H 1.08997 * 109.47651 * 184.65946 * 18 17 6 33 33 H 1.09000 * 109.47320 * 304.66388 * 18 17 6 34 34 H 1.09004 * 108.80433 * 155.79497 * 19 17 6 35 35 H 1.09006 * 108.74857 * 37.47578 * 19 17 6 36 36 H 1.09005 * 109.05643 * 300.80088 * 20 19 17 37 37 H 1.09008 * 109.05768 * 181.89085 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8952 1.0270 0.0000 4 6 2.0341 -0.7143 1.2246 5 6 3.3714 -0.1482 1.7459 6 6 4.3555 0.1711 0.6044 7 1 4.0805 1.1257 0.1558 8 6 5.7681 0.2816 1.1816 9 6 5.8180 1.4143 2.1743 10 1 4.9550 2.0487 2.3136 11 6 6.9651 1.6408 2.9049 12 7 8.0161 0.8686 2.7350 13 14 7.0267 3.0444 4.1360 14 1 8.3617 3.0749 4.7857 15 1 5.9779 2.8440 5.1680 16 1 6.7895 4.3306 3.4325 17 7 4.3444 -0.8478 -0.4170 18 6 5.7018 -1.1106 -0.9132 19 6 3.4494 -0.4302 -1.5180 20 6 2.0476 -0.7363 -1.2559 21 1 -0.3632 0.5099 0.8923 22 1 -0.3634 0.5178 -0.8876 23 1 -0.3633 -1.0276 -0.0045 24 1 2.1695 -1.7689 0.9847 25 1 1.2862 -0.6295 2.0129 26 1 3.8287 -0.8794 2.4126 27 1 3.1736 0.7647 2.3078 28 1 6.4761 0.4738 0.3754 29 1 6.0307 -0.6510 1.6809 30 1 7.9843 0.1400 2.0954 31 1 6.3086 -1.5265 -0.1088 32 1 5.6558 -1.8213 -1.7383 33 1 6.1484 -0.1789 -1.2606 34 1 3.7553 -0.9397 -2.4318 35 1 3.5526 0.6450 -1.6648 36 1 1.9396 -1.8109 -1.1082 37 1 1.4505 -0.4348 -2.1165 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260845861.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:08 Heat of formation + Delta-G solvation = -34.514069 kcal Electronic energy + Delta-G solvation = -15015.227232 eV Core-core repulsion = 12790.843575 eV Total energy + Delta-G solvation = -2224.383657 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.71367 -36.86168 -35.43772 -33.64332 -30.46981 -29.78344 -27.05881 -25.68084 -24.31919 -23.25120 -21.26507 -20.07347 -18.74284 -16.97264 -16.55857 -16.13941 -15.65740 -15.51079 -14.84727 -14.46277 -14.17613 -14.10202 -13.65815 -13.47834 -13.28349 -12.90834 -12.71556 -12.54384 -12.31622 -12.11522 -11.97409 -11.57725 -11.43244 -11.28156 -11.20212 -10.92946 -10.69110 -10.54150 -9.21990 -8.68761 -6.38363 1.49368 1.57881 1.77102 2.54187 3.03768 3.15027 3.74368 3.98352 3.99701 4.24918 4.26650 4.35978 4.36917 4.40509 4.59132 4.70037 4.72699 4.87536 4.88199 4.94359 4.99105 5.05317 5.08869 5.14876 5.20867 5.30024 5.36113 5.43087 5.52924 5.56161 5.63552 5.87989 6.16327 6.21476 6.32060 6.59499 7.42311 8.71343 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.036812 B = 0.008966 C = 0.007662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.436458 B = 3122.308760 C = 3653.480197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.091 4.091 3 H 0.047 0.953 4 C -0.096 4.096 5 C -0.084 4.084 6 C 0.108 3.892 7 H 0.022 0.978 8 C 0.009 3.991 9 C -0.608 4.608 10 H 0.048 0.952 11 C -0.039 4.039 12 N -0.938 5.938 13 Si 1.114 2.886 14 H -0.283 1.283 15 H -0.269 1.269 16 H -0.270 1.270 17 N -0.534 5.534 18 C 0.034 3.966 19 C 0.051 3.949 20 C -0.102 4.102 21 H 0.053 0.947 22 H 0.064 0.936 23 H 0.063 0.937 24 H 0.060 0.940 25 H 0.060 0.940 26 H 0.033 0.967 27 H 0.043 0.957 28 H -0.005 1.005 29 H -0.010 1.010 30 H 0.254 0.746 31 H 0.048 0.952 32 H 0.087 0.913 33 H 0.011 0.989 34 H 0.081 0.919 35 H 0.020 0.980 36 H 0.070 0.930 37 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.413 -2.497 -7.476 15.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.110 4.110 3 H 0.065 0.935 4 C -0.134 4.134 5 C -0.122 4.122 6 C -0.001 4.001 7 H 0.040 0.960 8 C -0.029 4.029 9 C -0.647 4.647 10 H 0.067 0.933 11 C -0.236 4.236 12 N -0.576 5.576 13 Si 0.935 3.065 14 H -0.208 1.208 15 H -0.194 1.194 16 H -0.195 1.195 17 N -0.259 5.259 18 C -0.114 4.114 19 C -0.076 4.076 20 C -0.139 4.139 21 H 0.072 0.928 22 H 0.083 0.917 23 H 0.082 0.918 24 H 0.079 0.921 25 H 0.079 0.921 26 H 0.052 0.948 27 H 0.062 0.938 28 H 0.013 0.987 29 H 0.008 0.992 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.105 0.895 33 H 0.030 0.970 34 H 0.099 0.901 35 H 0.039 0.961 36 H 0.089 0.911 37 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -12.639 -2.203 -6.186 14.243 hybrid contribution 0.036 -0.059 -1.279 1.281 sum -12.603 -2.262 -7.465 14.822 Atomic orbital electron populations 1.21804 0.93255 1.02307 1.01956 1.20924 0.96608 0.98542 0.94899 0.93473 1.21267 0.94677 1.00047 0.97394 1.21712 0.95040 0.99289 0.96169 1.21205 0.95544 0.90956 0.92394 0.96039 1.19607 0.93228 0.95218 0.94817 1.22401 1.01461 1.16053 1.24753 0.93350 1.27379 0.92071 1.03216 1.00933 1.70921 1.31728 1.18645 1.36289 0.82977 0.76513 0.72745 0.74223 1.20820 1.19385 1.19500 1.61884 1.09546 1.43465 1.10956 1.22377 0.89891 0.99222 0.99903 1.21169 0.94793 0.98065 0.93600 1.20621 0.94145 1.01173 0.98012 0.92834 0.91731 0.91806 0.92150 0.92104 0.94768 0.93803 0.98735 0.99196 0.93681 0.93309 0.89480 0.97018 0.90051 0.96136 0.91111 0.89534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.73 8.91 71.98 0.64 -2.09 16 2 C -0.09 -2.43 2.39 -11.10 -0.03 -2.45 16 3 H 0.05 1.45 7.16 -2.39 -0.02 1.43 16 4 C -0.10 -2.99 4.98 30.21 0.15 -2.84 16 5 C -0.08 -3.42 4.97 31.39 0.16 -3.26 16 6 C 0.11 4.73 1.82 45.76 0.08 4.82 16 7 H 0.02 0.99 6.50 -2.38 -0.02 0.98 16 8 C 0.01 0.46 2.47 29.85 0.07 0.53 16 9 C -0.61 -35.54 8.46 25.60 0.22 -35.33 16 10 H 0.05 2.77 7.14 -2.91 -0.02 2.75 16 11 C -0.04 -2.30 5.46 84.65 0.46 -1.84 16 12 N -0.94 -59.55 13.65 21.45 0.29 -59.25 16 13 Si 1.11 51.46 29.90 68.60 2.05 53.51 16 14 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 15 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 16 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 17 N -0.53 -19.80 4.48 -911.99 -4.09 -23.89 16 18 C 0.03 1.25 8.17 127.69 1.04 2.30 16 19 C 0.05 1.49 4.97 83.92 0.42 1.91 16 20 C -0.10 -2.48 4.91 28.92 0.14 -2.34 16 21 H 0.05 1.06 8.08 -2.39 -0.02 1.04 16 22 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 23 H 0.06 1.14 8.14 -2.39 -0.02 1.13 16 24 H 0.06 1.87 7.38 -2.39 -0.02 1.85 16 25 H 0.06 1.70 7.68 -2.39 -0.02 1.68 16 26 H 0.03 1.52 7.93 -2.39 -0.02 1.50 16 27 H 0.04 1.87 7.45 -2.38 -0.02 1.86 16 28 H -0.01 -0.31 5.93 -2.38 -0.01 -0.32 16 29 H -0.01 -0.60 7.18 -2.39 -0.02 -0.62 16 30 H 0.25 16.35 7.19 -92.71 -0.67 15.69 16 31 H 0.05 2.01 6.64 -2.38 -0.02 1.99 16 32 H 0.09 2.53 7.88 -2.39 -0.02 2.51 16 33 H 0.01 0.45 7.01 -2.39 -0.02 0.43 16 34 H 0.08 2.03 7.64 -2.39 -0.02 2.01 16 35 H 0.02 0.65 7.23 -2.38 -0.02 0.63 16 36 H 0.07 1.69 7.59 -2.38 -0.02 1.67 16 37 H 0.09 1.66 8.02 -2.38 -0.02 1.64 16 Total: -1.00 -65.99 274.80 2.73 -63.26 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: 1.11 Total: 6.97 kcal Atomic # 6 Polarization: -43.95 SS G_CDS: 3.36 Total: -40.59 kcal Atomic # 7 Polarization: -79.35 SS G_CDS: -3.80 Total: -83.14 kcal Atomic # 14 Polarization: 51.46 SS G_CDS: 2.05 Total: 53.51 kcal Total: -65.99 2.73 -63.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260845861.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.744 kcal (2) G-P(sol) polarization free energy of solvation -65.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds