Wall clock time and date at job start Mon Mar 30 2020 02:39:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09008 * 110.43655 * 2 1 4 4 C 1.54889 * 110.48853 * 122.68693 * 2 1 3 5 5 C 1.54883 * 102.75150 * 156.62308 * 4 2 1 6 6 C 1.54277 * 104.19423 * 322.05541 * 5 4 2 7 7 C 1.53001 * 110.03218 * 264.32966 * 6 5 4 8 8 C 1.52992 * 110.03197 * 142.89538 * 6 5 4 9 9 C 1.53876 * 106.59666 * 23.61153 * 6 5 4 10 10 C 1.50697 * 110.03240 * 240.71681 * 9 6 5 11 11 H 1.07999 * 119.99876 * 263.86870 * 10 9 6 12 12 C 1.37878 * 120.00196 * 83.86932 * 10 9 6 13 13 N 1.31519 * 119.99767 * 130.42745 * 12 10 9 14 14 Si 1.86797 * 119.99976 * 310.15225 * 12 10 9 15 15 H 1.48501 * 109.46938 * 128.64643 * 14 12 10 16 16 H 1.48497 * 109.47125 * 248.64454 * 14 12 10 17 17 H 1.48498 * 109.47131 * 8.64834 * 14 12 10 18 18 C 1.53002 * 110.07352 * 119.30476 * 9 6 5 19 19 N 1.46895 * 109.47283 * 180.99627 * 18 9 6 20 20 H 1.08994 * 109.47124 * 203.79498 * 1 2 3 21 21 H 1.09010 * 109.46904 * 323.79035 * 1 2 3 22 22 H 1.08999 * 109.47096 * 83.79034 * 1 2 3 23 23 H 1.09006 * 110.75093 * 274.93807 * 4 2 1 24 24 H 1.08998 * 110.75418 * 38.30150 * 4 2 1 25 25 H 1.08995 * 110.49253 * 80.73457 * 5 4 2 26 26 H 1.09000 * 110.48832 * 203.24797 * 5 4 2 27 27 H 1.08999 * 109.46787 * 193.26872 * 7 6 5 28 28 H 1.09005 * 109.46791 * 313.26148 * 7 6 5 29 29 H 1.08999 * 109.46948 * 73.25948 * 7 6 5 30 30 H 1.08999 * 109.47201 * 302.83824 * 8 6 5 31 31 H 1.09000 * 109.47201 * 62.83391 * 8 6 5 32 32 H 1.09003 * 109.47566 * 182.83487 * 8 6 5 33 33 H 0.97000 * 119.99577 * 179.97438 * 13 12 10 34 34 H 1.08998 * 109.47174 * 301.00026 * 18 9 6 35 35 H 1.09003 * 109.46671 * 60.99537 * 18 9 6 36 36 H 1.00905 * 110.99909 * 183.60445 * 19 18 9 37 37 H 1.00907 * 110.99664 * 307.55374 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9106 1.0215 0.0000 4 6 2.0721 -0.7836 1.2211 5 6 3.4907 -1.1989 0.7585 6 6 3.3165 -1.5396 -0.7361 7 6 3.1097 -3.0456 -0.9097 8 6 4.5464 -1.0846 -1.5241 9 6 2.0699 -0.7773 -1.2183 10 6 1.0297 -1.7491 -1.7128 11 1 0.9570 -1.9721 -2.7670 12 6 0.1709 -2.3536 -0.8194 13 7 -1.1241 -2.3526 -1.0488 14 14 0.8475 -3.1807 0.7127 15 1 0.1232 -2.6776 1.9076 16 1 0.6629 -4.6502 0.6045 17 1 2.2940 -2.8717 0.8443 18 6 2.4495 0.1970 -2.3353 19 7 1.2552 0.9341 -2.7690 20 1 -0.3633 -0.9403 0.4146 21 1 -0.3633 0.8293 0.6071 22 1 -0.3633 0.1112 -1.0216 23 1 2.1251 -0.1408 2.0999 24 1 1.4580 -1.6618 1.4201 25 1 4.1898 -0.3718 0.8822 26 1 3.8326 -2.0724 1.3136 27 1 3.2228 -3.3089 -1.9613 28 1 3.8501 -3.5845 -0.3185 29 1 2.1090 -3.3160 -0.5728 30 1 4.6995 -0.0159 -1.3736 31 1 5.4235 -1.6298 -1.1754 32 1 4.3927 -1.2838 -2.5847 33 1 -1.7282 -2.7781 -0.4205 34 1 3.1962 0.9000 -1.9661 35 1 2.8595 -0.3590 -3.1785 36 1 1.4677 1.5419 -3.5460 37 1 0.5038 0.3014 -2.9998 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260956768.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:58 Heat of formation + Delta-G solvation = 75.417831 kcal Electronic energy + Delta-G solvation = -16338.455989 eV Core-core repulsion = 14118.839337 eV Total energy + Delta-G solvation = -2219.616652 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.70004 -33.63938 -33.17679 -31.86223 -28.67927 -27.55104 -26.38337 -23.70259 -22.61159 -21.55815 -19.03134 -17.83748 -16.53886 -15.05115 -14.92666 -14.15949 -13.52845 -13.49907 -13.33441 -12.95932 -12.20986 -12.10770 -11.77276 -11.48771 -11.17512 -11.05339 -10.92798 -10.68348 -10.36891 -10.19578 -9.74980 -9.42529 -9.18224 -9.10546 -8.90781 -8.73996 -7.96505 -7.56866 -7.44322 -6.35330 -3.82493 3.38680 3.49370 3.58472 4.46418 4.88598 5.52392 5.60310 5.62529 5.85606 6.05015 6.18597 6.24630 6.27280 6.40197 6.45545 6.53054 6.59010 6.64706 6.66580 6.72167 6.75948 6.89952 6.98964 7.06048 7.09229 7.29854 7.37578 7.51815 7.57083 7.65022 7.86248 8.08439 8.30504 8.51098 8.61201 9.04018 9.57902 10.72112 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.026850 B = 0.022162 C = 0.017222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.581578 B = 1263.115005 C = 1625.411273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.066 4.066 3 H 0.049 0.951 4 C -0.141 4.141 5 C -0.109 4.109 6 C -0.070 4.070 7 C -0.105 4.105 8 C -0.134 4.134 9 C 0.072 3.928 10 C -0.561 4.561 11 H 0.064 0.936 12 C 0.131 3.869 13 N -0.823 5.823 14 Si 0.793 3.207 15 H -0.312 1.312 16 H -0.309 1.309 17 H -0.199 1.199 18 C 0.090 3.910 19 N -0.845 5.845 20 H 0.059 0.941 21 H 0.001 0.999 22 H 0.086 0.914 23 H 0.047 0.953 24 H 0.059 0.941 25 H 0.053 0.947 26 H 0.052 0.948 27 H 0.044 0.956 28 H 0.020 0.980 29 H 0.062 0.938 30 H 0.047 0.953 31 H 0.035 0.965 32 H 0.051 0.949 33 H 0.262 0.738 34 H 0.043 0.957 35 H 0.009 0.991 36 H 0.312 0.688 37 H 0.356 0.644 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.951 2.694 0.602 7.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.085 4.085 3 H 0.068 0.932 4 C -0.178 4.178 5 C -0.146 4.146 6 C -0.071 4.071 7 C -0.161 4.161 8 C -0.191 4.191 9 C 0.071 3.929 10 C -0.594 4.594 11 H 0.082 0.918 12 C -0.077 4.077 13 N -0.453 5.453 14 Si 0.624 3.376 15 H -0.244 1.244 16 H -0.239 1.239 17 H -0.124 1.124 18 C -0.041 4.041 19 N -0.376 5.376 20 H 0.078 0.922 21 H 0.020 0.980 22 H 0.105 0.895 23 H 0.065 0.935 24 H 0.077 0.923 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.063 0.937 28 H 0.039 0.961 29 H 0.080 0.920 30 H 0.066 0.934 31 H 0.054 0.946 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.062 0.938 35 H 0.027 0.973 36 H 0.122 0.878 37 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 6.750 2.975 1.293 7.488 hybrid contribution 0.302 -1.185 0.135 1.231 sum 7.052 1.789 1.428 7.414 Atomic orbital electron populations 1.22111 0.94502 0.98511 1.02929 1.21866 0.96419 0.96545 0.93673 0.93220 1.23196 0.96477 0.99738 0.98358 1.22457 0.96361 0.99069 0.96746 1.21528 0.96163 0.96357 0.93031 1.22005 0.99735 0.94758 0.99590 1.21965 0.97238 0.99814 1.00091 1.18990 0.91130 0.91839 0.90937 1.20094 1.16264 1.28913 0.94087 0.91850 1.24861 0.93250 0.94003 0.95557 1.70629 1.02555 1.35181 1.36975 0.89419 0.85067 0.78354 0.84729 1.24364 1.23928 1.12354 1.21825 0.90940 0.94369 0.96936 1.58800 1.10346 1.26610 1.41795 0.92220 0.97958 0.89546 0.93460 0.92339 0.92836 0.92927 0.93677 0.96148 0.91957 0.93375 0.94626 0.92978 0.92821 0.93818 0.97281 0.87819 0.82809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.96 7.54 37.16 0.28 -2.68 16 2 C -0.07 -1.48 2.51 -88.96 -0.22 -1.70 16 3 H 0.05 1.08 7.85 -51.92 -0.41 0.67 16 4 C -0.14 -3.02 5.51 -24.74 -0.14 -3.16 16 5 C -0.11 -2.12 5.30 -25.07 -0.13 -2.26 16 6 C -0.07 -1.42 0.83 -153.39 -0.13 -1.54 16 7 C -0.10 -2.22 6.11 37.16 0.23 -1.99 16 8 C -0.13 -2.32 7.16 37.15 0.27 -2.06 16 9 C 0.07 1.59 0.53 -154.54 -0.08 1.51 16 10 C -0.56 -14.16 4.74 -34.44 -0.16 -14.32 16 11 H 0.06 1.75 8.05 -52.49 -0.42 1.33 16 12 C 0.13 3.46 2.69 -17.82 -0.05 3.41 16 13 N -0.82 -22.71 12.68 55.43 0.70 -22.00 16 14 Si 0.79 19.65 19.15 -169.99 -3.26 16.39 16 15 H -0.31 -8.09 7.00 56.52 0.40 -7.69 16 16 H -0.31 -8.01 7.11 56.52 0.40 -7.61 16 17 H -0.20 -4.49 1.85 56.52 0.10 -4.38 16 18 C 0.09 1.79 4.43 -3.83 -0.02 1.78 16 19 N -0.85 -16.41 8.57 -10.37 -0.09 -16.50 16 20 H 0.06 1.54 3.59 -51.93 -0.19 1.35 16 21 H 0.00 0.03 8.14 -51.92 -0.42 -0.39 16 22 H 0.09 2.20 5.60 -51.93 -0.29 1.91 16 23 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 24 H 0.06 1.37 1.49 -51.93 -0.08 1.29 16 25 H 0.05 0.94 7.84 -51.93 -0.41 0.53 16 26 H 0.05 0.99 6.89 -51.93 -0.36 0.63 16 27 H 0.04 0.93 8.06 -51.93 -0.42 0.51 16 28 H 0.02 0.38 7.84 -51.93 -0.41 -0.02 16 29 H 0.06 1.46 1.13 -51.93 -0.06 1.40 16 30 H 0.05 0.79 6.69 -51.93 -0.35 0.44 16 31 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.05 0.90 6.77 -51.93 -0.35 0.55 16 33 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 34 H 0.04 0.83 6.67 -51.93 -0.35 0.48 16 35 H 0.01 0.18 6.80 -51.93 -0.35 -0.17 16 36 H 0.31 5.13 9.08 -39.29 -0.36 4.77 16 37 H 0.36 7.61 7.14 -39.29 -0.28 7.33 16 LS Contribution 237.94 15.07 3.59 3.59 Total: -1.00 -26.38 237.94 -4.99 -31.37 By element: Atomic # 1 Polarization: 15.95 SS G_CDS: -5.78 Total: 10.18 kcal Atomic # 6 Polarization: -22.87 SS G_CDS: -0.16 Total: -23.02 kcal Atomic # 7 Polarization: -39.12 SS G_CDS: 0.61 Total: -38.51 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -3.26 Total: 16.39 kcal Total LS contribution 3.59 Total: 3.59 kcal Total: -26.38 -4.99 -31.37 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260956768.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.789 kcal (2) G-P(sol) polarization free energy of solvation -26.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.371 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds