Wall clock time and date at job start Mon Mar 30 2020 02:39:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09008 * 110.43655 * 2 1 4 4 C 1.54889 * 110.48853 * 122.68693 * 2 1 3 5 5 C 1.54883 * 102.75150 * 156.62308 * 4 2 1 6 6 C 1.54277 * 104.19423 * 322.05541 * 5 4 2 7 7 C 1.53001 * 110.03218 * 264.32966 * 6 5 4 8 8 C 1.52992 * 110.03197 * 142.89538 * 6 5 4 9 9 C 1.53876 * 106.59666 * 23.61153 * 6 5 4 10 10 C 1.50697 * 110.03240 * 240.71681 * 9 6 5 11 11 H 1.07999 * 119.99876 * 263.86870 * 10 9 6 12 12 C 1.37878 * 120.00196 * 83.86932 * 10 9 6 13 13 N 1.31519 * 119.99767 * 130.42745 * 12 10 9 14 14 Si 1.86797 * 119.99976 * 310.15225 * 12 10 9 15 15 H 1.48501 * 109.46938 * 128.64643 * 14 12 10 16 16 H 1.48497 * 109.47125 * 248.64454 * 14 12 10 17 17 H 1.48498 * 109.47131 * 8.64834 * 14 12 10 18 18 C 1.53002 * 110.07352 * 119.30476 * 9 6 5 19 19 N 1.46895 * 109.47283 * 180.99627 * 18 9 6 20 20 H 1.08994 * 109.47124 * 203.79498 * 1 2 3 21 21 H 1.09010 * 109.46904 * 323.79035 * 1 2 3 22 22 H 1.08999 * 109.47096 * 83.79034 * 1 2 3 23 23 H 1.09006 * 110.75093 * 274.93807 * 4 2 1 24 24 H 1.08998 * 110.75418 * 38.30150 * 4 2 1 25 25 H 1.08995 * 110.49253 * 80.73457 * 5 4 2 26 26 H 1.09000 * 110.48832 * 203.24797 * 5 4 2 27 27 H 1.08999 * 109.46787 * 193.26872 * 7 6 5 28 28 H 1.09005 * 109.46791 * 313.26148 * 7 6 5 29 29 H 1.08999 * 109.46948 * 73.25948 * 7 6 5 30 30 H 1.08999 * 109.47201 * 302.83824 * 8 6 5 31 31 H 1.09000 * 109.47201 * 62.83391 * 8 6 5 32 32 H 1.09003 * 109.47566 * 182.83487 * 8 6 5 33 33 H 0.97000 * 119.99577 * 179.97438 * 13 12 10 34 34 H 1.08998 * 109.47174 * 301.00026 * 18 9 6 35 35 H 1.09003 * 109.46671 * 60.99537 * 18 9 6 36 36 H 1.00905 * 110.99909 * 183.60445 * 19 18 9 37 37 H 1.00907 * 110.99664 * 307.55374 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9106 1.0215 0.0000 4 6 2.0721 -0.7836 1.2211 5 6 3.4907 -1.1989 0.7585 6 6 3.3165 -1.5396 -0.7361 7 6 3.1097 -3.0456 -0.9097 8 6 4.5464 -1.0846 -1.5241 9 6 2.0699 -0.7773 -1.2183 10 6 1.0297 -1.7491 -1.7128 11 1 0.9570 -1.9721 -2.7670 12 6 0.1709 -2.3536 -0.8194 13 7 -1.1241 -2.3526 -1.0488 14 14 0.8475 -3.1807 0.7127 15 1 0.1232 -2.6776 1.9076 16 1 0.6629 -4.6502 0.6045 17 1 2.2940 -2.8717 0.8443 18 6 2.4495 0.1970 -2.3353 19 7 1.2552 0.9341 -2.7690 20 1 -0.3633 -0.9403 0.4146 21 1 -0.3633 0.8293 0.6071 22 1 -0.3633 0.1112 -1.0216 23 1 2.1251 -0.1408 2.0999 24 1 1.4580 -1.6618 1.4201 25 1 4.1898 -0.3718 0.8822 26 1 3.8326 -2.0724 1.3136 27 1 3.2228 -3.3089 -1.9613 28 1 3.8501 -3.5845 -0.3185 29 1 2.1090 -3.3160 -0.5728 30 1 4.6995 -0.0159 -1.3736 31 1 5.4235 -1.6298 -1.1754 32 1 4.3927 -1.2838 -2.5847 33 1 -1.7282 -2.7781 -0.4205 34 1 3.1962 0.9000 -1.9661 35 1 2.8595 -0.3590 -3.1785 36 1 1.4677 1.5419 -3.5460 37 1 0.5038 0.3014 -2.9998 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260956768.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:57 Heat of formation + Delta-G solvation = 56.423324 kcal Electronic energy + Delta-G solvation = -16339.279653 eV Core-core repulsion = 14118.839337 eV Total energy + Delta-G solvation = -2220.440316 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.37920 -35.38460 -34.86825 -33.64150 -30.38584 -29.16302 -28.14479 -25.51418 -24.21454 -23.22123 -20.74868 -19.66919 -18.30764 -16.81767 -16.57479 -15.97069 -15.31243 -15.09104 -14.98028 -14.58001 -14.02219 -13.76160 -13.49167 -13.29433 -12.84882 -12.61582 -12.54517 -12.47356 -12.22009 -11.91494 -11.38489 -11.15261 -10.94418 -10.76384 -10.67197 -10.52640 -9.76524 -9.49233 -9.10812 -8.40592 -5.84285 1.38394 1.52330 1.55479 2.44955 2.88920 3.94325 3.99412 4.04521 4.29914 4.52645 4.61475 4.69412 4.70900 4.81305 4.89479 5.00824 5.01710 5.03284 5.13337 5.14506 5.18572 5.28563 5.32101 5.34466 5.38461 5.64326 5.68027 5.78467 5.83052 5.93356 5.95833 6.16322 6.56082 6.68280 6.98542 7.07917 7.54907 8.69800 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.026850 B = 0.022162 C = 0.017222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.581578 B = 1263.115005 C = 1625.411273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.066 4.066 3 H 0.062 0.938 4 C -0.149 4.149 5 C -0.106 4.106 6 C -0.074 4.074 7 C -0.112 4.112 8 C -0.128 4.128 9 C 0.066 3.934 10 C -0.545 4.545 11 H 0.030 0.970 12 C 0.100 3.900 13 N -0.863 5.863 14 Si 0.826 3.174 15 H -0.336 1.336 16 H -0.334 1.334 17 H -0.150 1.150 18 C 0.093 3.907 19 N -0.849 5.849 20 H 0.038 0.962 21 H 0.011 0.989 22 H 0.065 0.935 23 H 0.068 0.932 24 H 0.036 0.964 25 H 0.084 0.916 26 H 0.063 0.937 27 H 0.042 0.958 28 H 0.044 0.956 29 H 0.035 0.965 30 H 0.062 0.938 31 H 0.056 0.944 32 H 0.047 0.953 33 H 0.257 0.743 34 H 0.065 0.935 35 H 0.008 0.992 36 H 0.331 0.669 37 H 0.342 0.658 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.982 3.843 1.244 10.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.084 4.084 3 H 0.080 0.920 4 C -0.186 4.186 5 C -0.143 4.143 6 C -0.075 4.075 7 C -0.168 4.168 8 C -0.185 4.185 9 C 0.065 3.935 10 C -0.579 4.579 11 H 0.048 0.952 12 C -0.105 4.105 13 N -0.495 5.495 14 Si 0.661 3.339 15 H -0.270 1.270 16 H -0.266 1.266 17 H -0.073 1.073 18 C -0.037 4.037 19 N -0.379 5.379 20 H 0.056 0.944 21 H 0.030 0.970 22 H 0.084 0.916 23 H 0.087 0.913 24 H 0.054 0.946 25 H 0.102 0.898 26 H 0.082 0.918 27 H 0.061 0.939 28 H 0.063 0.937 29 H 0.053 0.947 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.083 0.917 35 H 0.026 0.974 36 H 0.142 0.858 37 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 9.826 4.143 1.929 10.837 hybrid contribution -0.709 -1.510 -0.158 1.675 sum 9.117 2.633 1.771 9.653 Atomic orbital electron populations 1.21995 0.96390 0.97675 1.01550 1.21840 0.94755 0.97382 0.94436 0.91993 1.23227 0.97413 0.99116 0.98800 1.22494 0.95493 1.00718 0.95603 1.21490 0.96428 0.95170 0.94416 1.22049 0.98693 0.96127 0.99971 1.21883 0.96284 1.00974 0.99335 1.19043 0.91257 0.91538 0.91674 1.20170 1.16807 1.28723 0.92178 0.95230 1.25262 0.93214 0.94660 0.97325 1.70698 1.03524 1.37094 1.38217 0.89066 0.87233 0.75874 0.81766 1.26971 1.26611 1.07307 1.21803 0.91290 0.94382 0.96246 1.58773 1.09891 1.26376 1.42872 0.94358 0.97036 0.91622 0.91310 0.94614 0.89757 0.91801 0.93902 0.93696 0.94670 0.91902 0.92480 0.93402 0.93320 0.91716 0.97402 0.85803 0.84438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.68 7.54 71.98 0.54 -5.14 16 2 C -0.07 -2.76 2.51 -9.72 -0.02 -2.78 16 3 H 0.06 2.47 7.85 -2.38 -0.02 2.45 16 4 C -0.15 -5.87 5.51 31.88 0.18 -5.70 16 5 C -0.11 -3.57 5.30 31.67 0.17 -3.41 16 6 C -0.07 -2.71 0.83 -51.46 -0.04 -2.76 16 7 C -0.11 -4.44 6.11 71.98 0.44 -4.00 16 8 C -0.13 -3.78 7.16 71.98 0.52 -3.27 16 9 C 0.07 2.76 0.53 -52.20 -0.03 2.74 16 10 C -0.55 -27.66 4.74 25.60 0.12 -27.54 16 11 H 0.03 1.68 8.05 -2.91 -0.02 1.66 16 12 C 0.10 5.37 2.69 84.65 0.23 5.60 16 13 N -0.86 -49.60 12.68 21.45 0.27 -49.33 16 14 Si 0.83 40.87 19.15 68.60 1.31 42.19 16 15 H -0.34 -17.69 7.00 99.48 0.70 -16.99 16 16 H -0.33 -17.59 7.11 99.48 0.71 -16.88 16 17 H -0.15 -6.36 1.85 99.48 0.18 -6.17 16 18 C 0.09 3.47 4.43 86.30 0.38 3.86 16 19 N -0.85 -31.74 8.57 -186.72 -1.60 -33.34 16 20 H 0.04 1.99 3.59 -2.39 -0.01 1.99 16 21 H 0.01 0.48 8.14 -2.38 -0.02 0.46 16 22 H 0.06 3.38 5.60 -2.39 -0.01 3.36 16 23 H 0.07 2.40 8.14 -2.38 -0.02 2.38 16 24 H 0.04 1.60 1.49 -2.39 0.00 1.60 16 25 H 0.08 2.40 7.84 -2.39 -0.02 2.38 16 26 H 0.06 2.04 6.89 -2.39 -0.02 2.03 16 27 H 0.04 1.68 8.06 -2.39 -0.02 1.66 16 28 H 0.04 1.54 7.84 -2.38 -0.02 1.52 16 29 H 0.04 1.59 1.13 -2.39 0.00 1.59 16 30 H 0.06 1.69 6.69 -2.39 -0.02 1.67 16 31 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.05 1.46 6.77 -2.39 -0.02 1.44 16 33 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 34 H 0.06 2.16 6.67 -2.39 -0.02 2.15 16 35 H 0.01 0.30 6.80 -2.39 -0.02 0.28 16 36 H 0.33 10.21 9.08 -89.69 -0.81 9.40 16 37 H 0.34 14.67 7.14 -89.69 -0.64 14.03 16 Total: -1.00 -57.37 237.94 1.56 -55.81 By element: Atomic # 1 Polarization: 27.97 SS G_CDS: -0.90 Total: 27.07 kcal Atomic # 6 Polarization: -44.87 SS G_CDS: 2.48 Total: -42.39 kcal Atomic # 7 Polarization: -81.35 SS G_CDS: -1.33 Total: -82.67 kcal Atomic # 14 Polarization: 40.87 SS G_CDS: 1.31 Total: 42.19 kcal Total: -57.37 1.56 -55.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260956768.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.234 kcal (2) G-P(sol) polarization free energy of solvation -57.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.810 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds