Wall clock time and date at job start Mon Mar 30 2020 02:40:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08995 * 110.54074 * 2 1 4 4 C 1.54891 * 110.48715 * 237.38694 * 2 1 3 5 5 C 1.54888 * 102.74786 * 203.37794 * 4 2 1 6 6 C 1.54271 * 104.19818 * 37.94382 * 5 4 2 7 7 C 1.53003 * 110.03268 * 217.10526 * 6 5 4 8 8 C 1.52991 * 110.07371 * 95.69440 * 6 5 4 9 9 C 1.53876 * 106.59657 * 336.38623 * 6 5 4 10 10 C 1.50695 * 110.03666 * 240.66808 * 9 6 5 11 11 H 1.08000 * 120.00014 * 262.52737 * 10 9 6 12 12 C 1.37882 * 120.00163 * 82.52107 * 10 9 6 13 13 N 1.31507 * 120.00277 * 179.60217 * 12 10 9 14 14 Si 1.59577 * 143.59057 * 166.37411 * 3 2 1 15 15 H 1.48498 * 63.31758 * 173.14606 * 14 3 2 16 16 H 1.48497 * 167.45096 * 115.87263 * 14 3 2 17 17 H 1.48505 * 66.11106 * 44.05356 * 14 3 2 18 18 C 1.53001 * 110.02896 * 119.28372 * 9 6 5 19 19 N 1.46900 * 109.46779 * 174.41092 * 18 9 6 20 20 H 1.09000 * 109.47452 * 299.73960 * 1 2 3 21 21 H 1.08999 * 109.47504 * 59.74856 * 1 2 3 22 22 H 1.09005 * 109.47287 * 179.74715 * 1 2 3 23 23 H 1.08994 * 110.75718 * 85.06580 * 4 2 1 24 24 H 1.08998 * 110.91590 * 321.76371 * 4 2 1 25 25 H 1.09003 * 110.48834 * 279.26658 * 5 4 2 26 26 H 1.09003 * 110.49020 * 156.62123 * 5 4 2 27 27 H 1.08997 * 109.46924 * 177.16107 * 7 6 5 28 28 H 1.08998 * 109.46950 * 297.16938 * 7 6 5 29 29 H 1.09005 * 109.47189 * 57.16451 * 7 6 5 30 30 H 1.08999 * 109.47406 * 302.81427 * 8 6 5 31 31 H 1.09000 * 109.47337 * 62.81352 * 8 6 5 32 32 H 1.09001 * 109.47521 * 182.80889 * 8 6 5 33 33 H 0.96992 * 120.00343 * 179.97438 * 13 12 10 34 34 H 1.09002 * 109.47209 * 54.41346 * 18 9 6 35 35 H 1.08999 * 109.47501 * 294.41186 * 18 9 6 36 36 H 1.00908 * 110.99668 * 173.14611 * 19 18 9 37 37 H 1.00901 * 111.00122 * 297.09206 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9124 1.0207 0.0000 4 6 2.0720 -0.7820 -1.2222 5 6 3.4906 -1.1979 -0.7600 6 6 3.3165 -1.5405 0.7341 7 6 4.5465 -1.0864 1.5227 8 6 3.1102 -3.0466 0.9069 9 6 2.0699 -0.7788 1.2173 10 6 2.4447 0.1786 2.3191 11 1 2.3027 -0.1042 3.3517 12 6 2.9689 1.4156 2.0089 13 7 3.2886 2.2541 2.9701 14 14 3.2250 1.9003 0.2231 15 1 2.0209 2.6134 -0.2738 16 1 4.4075 2.7922 0.1170 17 1 3.4501 0.6805 -0.5935 18 6 1.0139 -1.7662 1.7182 19 7 -0.1134 -1.0246 2.2988 20 1 -0.3634 0.5098 0.8923 21 1 -0.3634 0.5177 -0.8877 22 1 -0.3634 -1.0277 -0.0045 23 1 2.1251 -0.1382 -2.1001 24 1 1.4591 -1.6601 -1.4254 25 1 4.1897 -0.3706 -0.8827 26 1 3.8316 -2.0722 -1.3145 27 1 4.3927 -1.2870 2.5830 28 1 5.4236 -1.6312 1.1733 29 1 4.6996 -0.0175 1.3736 30 1 2.2471 -3.3646 0.3221 31 1 3.9980 -3.5768 0.5622 32 1 2.9387 -3.2714 1.9596 33 1 3.6577 3.1241 2.7519 34 1 1.4528 -2.4134 2.4776 35 1 0.6592 -2.3727 0.8848 36 1 -0.8720 -1.6467 2.5352 37 1 0.1806 -0.4911 3.1032 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260956770.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:04 Heat of formation + Delta-G solvation = 55.893580 kcal Electronic energy + Delta-G solvation = -16205.837197 eV Core-core repulsion = 13985.373910 eV Total energy + Delta-G solvation = -2220.463287 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.83011 -33.71706 -32.56839 -32.25805 -28.76810 -27.32328 -26.64526 -23.67019 -22.62334 -21.72043 -19.65219 -17.71705 -16.26639 -15.55200 -14.89832 -14.27723 -13.86178 -13.34567 -12.86637 -12.73410 -12.33079 -12.11642 -12.02260 -11.68027 -11.26098 -11.15473 -10.69632 -10.56258 -10.40363 -10.30803 -9.95960 -9.79916 -9.49956 -9.24735 -9.06495 -8.66144 -8.31281 -7.97820 -7.40665 -5.95533 -3.92464 3.41968 3.50975 3.58943 4.54764 5.21405 5.42267 5.50910 5.63281 5.71576 6.02285 6.04426 6.09209 6.17213 6.23610 6.37217 6.43548 6.51191 6.52916 6.57487 6.62093 6.66592 6.72447 6.77156 6.90662 7.00264 7.15490 7.24947 7.37834 7.40920 7.57879 7.61074 7.96005 8.13856 8.36662 8.61257 9.01358 9.67543 11.14592 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.025323 B = 0.019905 C = 0.018241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.441792 B = 1406.370145 C = 1534.613707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.089 4.089 3 H 0.048 0.952 4 C -0.122 4.122 5 C -0.123 4.123 6 C -0.066 4.066 7 C -0.106 4.106 8 C -0.133 4.133 9 C 0.061 3.939 10 C -0.490 4.490 11 H 0.067 0.933 12 C 0.074 3.926 13 N -0.904 5.904 14 Si 0.826 3.174 15 H -0.298 1.298 16 H -0.321 1.321 17 H -0.180 1.180 18 C 0.088 3.912 19 N -0.838 5.838 20 H 0.083 0.917 21 H 0.011 0.989 22 H 0.049 0.951 23 H 0.048 0.952 24 H 0.059 0.941 25 H 0.080 0.920 26 H 0.048 0.952 27 H 0.056 0.944 28 H 0.015 0.985 29 H 0.059 0.941 30 H 0.045 0.955 31 H 0.036 0.964 32 H 0.052 0.948 33 H 0.260 0.740 34 H 0.014 0.986 35 H 0.047 0.953 36 H 0.312 0.688 37 H 0.349 0.651 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.141 -8.224 -5.611 10.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.106 4.106 3 H 0.065 0.935 4 C -0.160 4.160 5 C -0.160 4.160 6 C -0.067 4.067 7 C -0.163 4.163 8 C -0.190 4.190 9 C 0.059 3.941 10 C -0.527 4.527 11 H 0.085 0.915 12 C -0.127 4.127 13 N -0.542 5.542 14 Si 0.664 3.336 15 H -0.229 1.229 16 H -0.252 1.252 17 H -0.105 1.105 18 C -0.042 4.042 19 N -0.368 5.368 20 H 0.102 0.898 21 H 0.030 0.970 22 H 0.068 0.932 23 H 0.066 0.934 24 H 0.077 0.923 25 H 0.098 0.902 26 H 0.066 0.934 27 H 0.075 0.925 28 H 0.034 0.966 29 H 0.078 0.922 30 H 0.064 0.936 31 H 0.055 0.945 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.032 0.968 35 H 0.066 0.934 36 H 0.122 0.878 37 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -2.091 -7.704 -6.229 10.126 hybrid contribution 0.268 0.105 0.036 0.290 sum -1.822 -7.600 -6.193 9.971 Atomic orbital electron populations 1.21814 0.94618 1.00939 1.00070 1.22332 0.96357 0.97018 0.94856 0.93532 1.22591 0.96616 0.99134 0.97659 1.22897 0.97173 0.99410 0.96480 1.21446 0.98161 0.93781 0.93355 1.21691 0.93868 1.00711 0.99996 1.21947 0.99708 0.96525 1.00863 1.19109 0.89208 0.92626 0.93116 1.20570 1.41288 0.98390 0.92467 0.91531 1.25051 0.94537 0.96165 0.96966 1.69881 1.43861 1.08155 1.32273 0.88156 0.74832 0.81451 0.89209 1.22893 1.25203 1.10535 1.21803 0.91473 0.94586 0.96346 1.59178 1.10428 1.29030 1.38149 0.89794 0.97022 0.93245 0.93365 0.92263 0.90178 0.93363 0.92491 0.96554 0.92216 0.93555 0.94452 0.92914 0.93025 0.96819 0.93435 0.87759 0.83539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.35 7.69 37.15 0.29 -2.06 16 2 C -0.09 -1.90 2.09 -88.96 -0.19 -2.08 16 3 H 0.05 1.14 0.88 -51.93 -0.05 1.09 16 4 C -0.12 -2.28 5.54 -24.74 -0.14 -2.41 16 5 C -0.12 -2.28 5.17 -25.07 -0.13 -2.40 16 6 C -0.07 -1.30 0.71 -153.39 -0.11 -1.41 16 7 C -0.11 -2.23 7.13 37.16 0.27 -1.96 16 8 C -0.13 -2.24 7.18 37.15 0.27 -1.98 16 9 C 0.06 1.30 0.48 -154.54 -0.07 1.22 16 10 C -0.49 -12.66 5.66 -34.44 -0.19 -12.85 16 11 H 0.07 1.90 7.68 -52.49 -0.40 1.49 16 12 C 0.07 2.05 4.45 -17.82 -0.08 1.97 16 13 N -0.90 -27.36 13.96 55.43 0.77 -26.59 16 14 Si 0.83 20.76 21.73 -169.99 -3.69 17.06 16 15 H -0.30 -7.86 7.01 56.52 0.40 -7.47 16 16 H -0.32 -8.51 7.11 56.52 0.40 -8.10 16 17 H -0.18 -3.93 1.16 56.52 0.07 -3.87 16 18 C 0.09 1.67 3.87 -3.82 -0.01 1.65 16 19 N -0.84 -15.22 6.03 -10.37 -0.06 -15.28 16 20 H 0.08 1.81 6.59 -51.93 -0.34 1.47 16 21 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 22 H 0.05 0.91 6.05 -51.93 -0.31 0.59 16 23 H 0.05 0.85 8.13 -51.93 -0.42 0.43 16 24 H 0.06 1.01 8.06 -51.93 -0.42 0.59 16 25 H 0.08 1.56 5.36 -51.93 -0.28 1.28 16 26 H 0.05 0.79 7.84 -51.93 -0.41 0.38 16 27 H 0.06 1.27 7.50 -51.93 -0.39 0.88 16 28 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.06 1.40 4.47 -51.93 -0.23 1.17 16 30 H 0.05 0.73 6.90 -51.93 -0.36 0.37 16 31 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.05 0.89 6.60 -51.93 -0.34 0.55 16 33 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 34 H 0.01 0.26 6.39 -51.93 -0.33 -0.07 16 35 H 0.05 0.85 6.10 -51.93 -0.32 0.53 16 36 H 0.31 4.71 9.08 -39.29 -0.36 4.35 16 37 H 0.35 6.98 7.69 -39.29 -0.30 6.68 16 LS Contribution 245.03 15.07 3.69 3.69 Total: -1.00 -28.60 245.03 -5.40 -34.01 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: -6.01 Total: 9.43 kcal Atomic # 6 Polarization: -22.21 SS G_CDS: -0.11 Total: -22.32 kcal Atomic # 7 Polarization: -42.58 SS G_CDS: 0.71 Total: -41.86 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -3.69 Total: 17.06 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -28.60 -5.40 -34.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260956770.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.900 kcal (2) G-P(sol) polarization free energy of solvation -28.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.007 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds