Wall clock time and date at job start Mon Mar 30 2020 02:40:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 110.54156 * 2 1 4 4 C 1.55004 * 110.52706 * 122.66343 * 2 1 3 5 5 C 1.54892 * 102.75875 * 156.61204 * 4 2 1 6 6 C 1.54267 * 104.19435 * 322.04845 * 5 4 2 7 7 C 1.53001 * 110.03256 * 264.32241 * 6 5 4 8 8 C 1.53003 * 110.03148 * 142.89154 * 6 5 4 9 9 C 1.53879 * 106.59866 * 23.60981 * 6 5 4 10 10 C 1.50697 * 110.03140 * 119.33338 * 9 6 5 11 11 H 1.07996 * 120.00397 * 35.94809 * 10 9 6 12 12 C 1.37875 * 119.99475 * 215.94104 * 10 9 6 13 13 N 1.31515 * 120.00599 * 352.07833 * 12 10 9 14 14 Si 1.86809 * 119.99823 * 172.07441 * 12 10 9 15 15 H 1.48499 * 109.46836 * 0.02562 * 14 12 10 16 16 H 1.48501 * 109.46769 * 120.00095 * 14 12 10 17 17 H 1.48497 * 109.47039 * 240.00117 * 14 12 10 18 18 C 1.53009 * 110.02959 * 240.71593 * 9 6 5 19 19 N 1.46898 * 109.46728 * 292.81204 * 18 9 6 20 20 H 1.08995 * 109.47504 * 192.94475 * 1 2 3 21 21 H 1.09001 * 109.46987 * 312.94234 * 1 2 3 22 22 H 1.09001 * 109.47492 * 72.93643 * 1 2 3 23 23 H 1.09007 * 110.76249 * 38.29234 * 4 2 1 24 24 H 1.09003 * 110.90273 * 274.99936 * 4 2 1 25 25 H 1.08999 * 110.48603 * 203.37201 * 5 4 2 26 26 H 1.08998 * 110.59945 * 80.78302 * 5 4 2 27 27 H 1.08996 * 109.47252 * 184.58660 * 7 6 5 28 28 H 1.08997 * 109.46894 * 304.59525 * 7 6 5 29 29 H 1.09007 * 109.46916 * 64.59097 * 7 6 5 30 30 H 1.08995 * 109.47005 * 302.83310 * 8 6 5 31 31 H 1.08998 * 109.46712 * 62.83475 * 8 6 5 32 32 H 1.08999 * 109.46584 * 182.83259 * 8 6 5 33 33 H 0.97004 * 120.00212 * 180.02562 * 13 12 10 34 34 H 1.08996 * 109.46585 * 172.81067 * 18 9 6 35 35 H 1.08999 * 109.47159 * 52.81138 * 18 9 6 36 36 H 1.00903 * 110.99417 * 174.23603 * 19 18 9 37 37 H 1.00893 * 111.00416 * 298.19112 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9124 1.0207 0.0000 4 6 2.0735 -0.7834 1.2221 5 6 3.4919 -1.1988 0.7588 6 6 3.3170 -1.5404 -0.7354 7 6 3.1105 -3.0466 -0.9079 8 6 4.5464 -1.0856 -1.5244 9 6 2.0698 -0.7788 -1.2174 10 6 2.4438 0.1794 -2.3188 11 1 3.2044 -0.0922 -3.0357 12 6 1.8147 1.4028 -2.4112 13 7 0.7845 1.6725 -1.6395 14 14 2.4258 2.6773 -3.6326 15 1 3.5893 2.1318 -4.3767 16 1 1.3384 3.0081 -4.5884 17 1 2.8349 3.9049 -2.9040 18 6 1.0138 -1.7662 -1.7182 19 7 1.4988 -2.4246 -2.9385 20 1 -0.3634 -1.0015 0.2302 21 1 -0.3633 0.7001 0.7523 22 1 -0.3634 0.3015 -0.9824 23 1 1.4598 -1.6619 1.4220 24 1 2.1267 -0.1428 2.1023 25 1 3.8333 -2.0733 1.3127 26 1 4.1927 -0.3730 0.8818 27 1 3.0695 -3.2884 -1.9699 28 1 3.9392 -3.5823 -0.4449 29 1 2.1756 -3.3421 -0.4316 30 1 4.6992 -0.0168 -1.3747 31 1 5.4238 -1.6304 -1.1759 32 1 4.3919 -1.2856 -2.5847 33 1 0.3417 2.5331 -1.7048 34 1 0.0902 -1.2302 -1.9370 35 1 0.8252 -2.5168 -0.9507 36 1 0.8617 -3.1481 -3.2366 37 1 1.6531 -1.7526 -3.6751 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260956771.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:07 Heat of formation + Delta-G solvation = -3.524414 kcal Electronic energy + Delta-G solvation = -16013.525839 eV Core-core repulsion = 13790.485994 eV Total energy + Delta-G solvation = -2223.039845 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.76822 -35.00314 -34.50670 -33.30054 -30.00637 -28.70969 -27.71811 -25.39514 -24.05349 -23.29936 -20.28572 -19.35234 -17.09504 -16.62083 -16.36062 -16.05722 -15.25365 -14.82364 -14.35407 -14.09528 -13.76990 -13.68146 -13.35837 -13.08665 -12.88185 -12.46154 -12.40525 -12.20386 -11.96837 -11.88819 -11.56302 -11.14398 -11.09686 -10.90486 -10.74130 -10.31871 -10.08981 -9.97575 -8.89081 -7.68735 -5.92925 1.41808 1.49328 1.55733 2.53795 3.34431 4.16249 4.21443 4.28227 4.35194 4.76464 4.84675 4.93549 4.97387 5.02399 5.06753 5.11457 5.16818 5.19344 5.32807 5.36505 5.40733 5.45651 5.50823 5.62975 5.69674 5.84585 5.89027 6.04962 6.10026 6.20631 6.27131 6.49846 6.68987 6.80637 7.04347 7.18574 7.70301 9.09481 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.028545 B = 0.015511 C = 0.014212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.677591 B = 1804.693236 C = 1969.738356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.045 4.045 3 H 0.046 0.954 4 C -0.129 4.129 5 C -0.111 4.111 6 C -0.055 4.055 7 C -0.129 4.129 8 C -0.102 4.102 9 C 0.074 3.926 10 C -0.486 4.486 11 H 0.059 0.941 12 C 0.016 3.984 13 N -0.890 5.890 14 Si 0.927 3.073 15 H -0.273 1.273 16 H -0.293 1.293 17 H -0.295 1.295 18 C 0.088 3.912 19 N -0.832 5.832 20 H 0.012 0.988 21 H 0.007 0.993 22 H 0.082 0.918 23 H 0.055 0.945 24 H 0.047 0.953 25 H 0.062 0.938 26 H 0.046 0.954 27 H 0.087 0.913 28 H 0.030 0.970 29 H 0.037 0.963 30 H 0.032 0.968 31 H 0.035 0.965 32 H 0.045 0.955 33 H 0.246 0.754 34 H -0.002 1.002 35 H 0.045 0.955 36 H 0.327 0.673 37 H 0.337 0.663 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.846 -5.954 1.533 6.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.064 4.064 3 H 0.065 0.935 4 C -0.167 4.167 5 C -0.148 4.148 6 C -0.055 4.055 7 C -0.186 4.186 8 C -0.160 4.160 9 C 0.073 3.927 10 C -0.524 4.524 11 H 0.077 0.923 12 C -0.181 4.181 13 N -0.531 5.531 14 Si 0.756 3.244 15 H -0.198 1.198 16 H -0.220 1.220 17 H -0.222 1.222 18 C -0.042 4.042 19 N -0.361 5.361 20 H 0.031 0.969 21 H 0.027 0.973 22 H 0.100 0.900 23 H 0.074 0.926 24 H 0.066 0.934 25 H 0.081 0.919 26 H 0.065 0.935 27 H 0.105 0.895 28 H 0.049 0.951 29 H 0.056 0.944 30 H 0.051 0.949 31 H 0.054 0.946 32 H 0.064 0.936 33 H 0.056 0.944 34 H 0.016 0.984 35 H 0.063 0.937 36 H 0.138 0.862 37 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 2.358 -6.013 1.992 6.759 hybrid contribution -0.819 1.654 -0.987 2.093 sum 1.539 -4.359 1.005 4.731 Atomic orbital electron populations 1.21783 0.96664 0.95352 1.02047 1.21510 0.94723 0.97515 0.92683 0.93535 1.22732 0.96733 0.99092 0.98103 1.22435 0.96310 0.99534 0.96525 1.21093 0.96018 0.95431 0.92958 1.22083 0.98486 0.94138 1.03870 1.21629 0.95868 0.98922 0.99545 1.18883 0.90365 0.90978 0.92456 1.21564 1.19152 0.99826 1.11897 0.92260 1.25552 0.95480 0.99835 0.97249 1.70544 1.20718 1.21717 1.40123 0.86001 0.78086 0.80450 0.79870 1.19786 1.21998 1.22210 1.21893 0.96058 0.94838 0.91448 1.58967 1.51677 1.17305 1.08123 0.96942 0.97344 0.90012 0.92614 0.93418 0.91906 0.93523 0.89474 0.95108 0.94360 0.94911 0.94583 0.93588 0.94380 0.98378 0.93652 0.86198 0.84986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -4.61 6.92 71.98 0.50 -4.11 16 2 C -0.04 -2.06 2.08 -9.68 -0.02 -2.08 16 3 H 0.05 2.48 6.29 -2.39 -0.02 2.47 16 4 C -0.13 -5.05 6.33 31.93 0.20 -4.85 16 5 C -0.11 -4.13 5.90 31.67 0.19 -3.95 16 6 C -0.05 -2.16 0.91 -51.45 -0.05 -2.21 16 7 C -0.13 -4.55 7.12 71.98 0.51 -4.04 16 8 C -0.10 -4.05 7.06 71.98 0.51 -3.54 16 9 C 0.07 3.26 0.55 -52.20 -0.03 3.24 16 10 C -0.49 -23.79 5.38 25.60 0.14 -23.66 16 11 H 0.06 2.94 5.67 -2.91 -0.02 2.93 16 12 C 0.02 0.82 4.94 84.65 0.42 1.24 16 13 N -0.89 -46.75 7.31 21.45 0.16 -46.60 16 14 Si 0.93 42.26 29.54 68.60 2.03 44.29 16 15 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 16 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 17 H -0.30 -13.76 7.11 99.48 0.71 -13.05 16 18 C 0.09 3.65 4.00 86.31 0.35 4.00 16 19 N -0.83 -30.07 6.80 -186.71 -1.27 -31.34 16 20 H 0.01 0.50 7.19 -2.39 -0.02 0.48 16 21 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 22 H 0.08 4.13 4.69 -2.39 -0.01 4.12 16 23 H 0.06 2.07 7.89 -2.38 -0.02 2.05 16 24 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 25 H 0.06 2.07 7.80 -2.39 -0.02 2.05 16 26 H 0.05 1.77 7.83 -2.39 -0.02 1.76 16 27 H 0.09 3.15 5.93 -2.39 -0.01 3.14 16 28 H 0.03 0.97 8.08 -2.39 -0.02 0.96 16 29 H 0.04 1.35 6.09 -2.38 -0.01 1.33 16 30 H 0.03 1.38 7.48 -2.39 -0.02 1.37 16 31 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.05 1.87 6.66 -2.39 -0.02 1.85 16 33 H 0.25 12.80 8.31 -92.71 -0.77 12.03 16 34 H 0.00 -0.09 6.12 -2.39 -0.01 -0.11 16 35 H 0.05 1.81 5.93 -2.39 -0.01 1.80 16 36 H 0.33 10.00 9.08 -89.69 -0.81 9.19 16 37 H 0.34 13.06 7.91 -89.70 -0.71 12.35 16 Total: -1.00 -51.09 259.53 3.17 -47.92 By element: Atomic # 1 Polarization: 26.15 SS G_CDS: -0.46 Total: 25.70 kcal Atomic # 6 Polarization: -42.68 SS G_CDS: 2.71 Total: -39.96 kcal Atomic # 7 Polarization: -76.82 SS G_CDS: -1.11 Total: -77.94 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 2.03 Total: 44.29 kcal Total: -51.09 3.17 -47.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260956771.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.392 kcal (2) G-P(sol) polarization free energy of solvation -51.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds