Wall clock time and date at job start Mon Mar 30 2020 03:22:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09000 * 109.46876 * 2 1 4 4 C 1.53004 * 109.46834 * 240.00858 * 2 1 3 5 5 H 1.08992 * 109.47063 * 185.00026 * 4 2 1 6 6 N 1.46905 * 109.46781 * 304.99661 * 4 2 1 7 7 C 1.50695 * 109.46918 * 64.99774 * 4 2 1 8 8 H 1.07995 * 120.00569 * 355.73025 * 7 4 2 9 9 C 1.37883 * 119.99812 * 175.73601 * 7 4 2 10 10 N 1.31522 * 119.99818 * 354.31505 * 9 7 4 11 11 Si 1.86800 * 120.00199 * 174.59365 * 9 7 4 12 12 H 1.48504 * 109.47004 * 179.72380 * 11 9 7 13 13 H 1.48504 * 109.46861 * 299.72242 * 11 9 7 14 14 H 1.48491 * 109.47254 * 59.72450 * 11 9 7 15 15 C 1.52997 * 109.47258 * 120.00510 * 2 1 3 16 16 C 1.52999 * 109.47165 * 299.99852 * 15 2 1 17 17 C 1.52998 * 109.46796 * 179.97438 * 16 15 2 18 18 C 1.52998 * 109.47429 * 60.00104 * 17 16 15 19 19 C 1.53004 * 109.46969 * 300.00083 * 18 17 16 20 20 C 1.52998 * 109.47113 * 59.99723 * 19 18 17 21 21 H 1.09002 * 109.46743 * 299.99177 * 1 2 3 22 22 H 1.09000 * 109.47255 * 59.99068 * 1 2 3 23 23 H 1.08995 * 109.46980 * 179.97438 * 1 2 3 24 24 H 1.00899 * 110.99612 * 66.08478 * 6 4 2 25 25 H 1.00899 * 110.99888 * 190.02767 * 6 4 2 26 26 H 0.97002 * 119.99373 * 356.93240 * 10 9 7 27 27 H 1.09002 * 109.46873 * 59.99785 * 15 2 1 28 28 H 1.08995 * 109.47274 * 300.00146 * 16 15 2 29 29 H 1.08997 * 109.46982 * 60.00295 * 16 15 2 30 30 H 1.09002 * 109.47086 * 299.99838 * 17 16 15 31 31 H 1.09002 * 109.47130 * 179.97438 * 17 16 15 32 32 H 1.08999 * 109.47052 * 179.97438 * 18 17 16 33 33 H 1.08995 * 109.46829 * 59.99703 * 18 17 16 34 34 H 1.09007 * 109.46586 * 299.99551 * 19 18 17 35 35 H 1.08997 * 109.46634 * 180.02562 * 19 18 17 36 36 H 1.08997 * 109.46685 * 180.02562 * 20 19 18 37 37 H 1.08995 * 109.47357 * 59.99969 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2494 5 1 3.1262 -0.7993 -1.2058 6 7 1.4542 -2.0669 -1.3113 7 6 1.6412 0.0574 -2.4765 8 1 1.0219 0.9369 -2.3806 9 6 2.0670 -0.3533 -3.7220 10 7 2.9109 -1.3563 -3.8308 11 14 1.4515 0.5197 -5.2544 12 1 2.0592 -0.1040 -6.4573 13 1 -0.0271 0.4035 -5.3300 14 1 1.8329 1.9536 -5.1942 15 6 2.0401 -0.7213 1.2491 16 6 1.5302 -0.0002 2.4985 17 6 2.0397 -0.7220 3.7475 18 6 3.5697 -0.7226 3.7478 19 6 4.0796 -1.4437 2.4984 20 6 3.5701 -0.7219 1.2493 21 1 -0.3633 0.5137 0.8901 22 1 -0.3634 0.5140 -0.8899 23 1 -0.3633 -1.0276 -0.0005 24 1 0.4562 -2.0206 -1.4520 25 1 1.8954 -2.6205 -2.0303 26 1 3.2681 -1.7781 -3.0337 27 1 1.6767 -1.7490 1.2490 28 1 1.8934 1.0274 2.4985 29 1 0.4402 -0.0002 2.4985 30 1 1.6759 -1.7495 3.7472 31 1 1.6768 -0.2080 4.6376 32 1 3.9326 -1.2364 4.6380 33 1 3.9333 0.3049 3.7482 34 1 3.7159 -2.4712 2.4982 35 1 5.1696 -1.4445 2.4989 36 1 3.9330 -1.2359 0.3593 37 1 3.9337 0.3056 1.2497 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260960756.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:05 Heat of formation + Delta-G solvation = -47.105386 kcal Electronic energy + Delta-G solvation = -14988.095927 eV Core-core repulsion = 12763.166270 eV Total energy + Delta-G solvation = -2224.929657 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.71912 -35.72517 -32.63247 -30.54601 -30.07586 -28.20819 -25.59726 -23.73479 -22.06566 -21.36216 -19.47554 -18.50607 -16.83833 -15.43492 -14.87238 -13.96882 -13.85464 -13.75804 -13.24285 -13.02741 -12.68693 -12.34755 -11.99424 -11.73587 -11.53354 -11.23564 -10.86507 -10.81459 -10.72130 -10.57578 -10.15734 -10.13149 -10.00546 -9.65082 -9.52057 -9.19615 -8.92986 -8.36373 -7.11893 -6.33583 -4.12102 3.40732 3.40936 3.60282 4.49737 5.03735 5.11315 5.13754 5.31231 5.60660 5.62150 5.83908 5.86889 5.90081 5.91710 5.97643 6.10463 6.24219 6.27452 6.34137 6.40741 6.42805 6.49468 6.56173 6.68122 6.75789 6.84313 6.95434 7.07708 7.15176 7.33554 7.59597 8.10053 8.34121 8.72318 8.79726 8.91814 9.59426 10.97440 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.050308 B = 0.008129 C = 0.007589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.435558 B = 3443.711239 C = 3688.864165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.063 4.063 3 H 0.050 0.950 4 C 0.198 3.802 5 H 0.032 0.968 6 N -0.852 5.852 7 C -0.625 4.625 8 H 0.047 0.953 9 C 0.022 3.978 10 N -0.914 5.914 11 Si 1.063 2.937 12 H -0.283 1.283 13 H -0.289 1.289 14 H -0.289 1.289 15 C -0.072 4.072 16 C -0.117 4.117 17 C -0.117 4.117 18 C -0.117 4.117 19 C -0.118 4.118 20 C -0.112 4.112 21 H 0.033 0.967 22 H 0.054 0.946 23 H 0.051 0.949 24 H 0.320 0.680 25 H 0.329 0.671 26 H 0.270 0.730 27 H 0.076 0.924 28 H 0.053 0.947 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.051 0.949 32 H 0.052 0.948 33 H 0.056 0.944 34 H 0.059 0.941 35 H 0.052 0.948 36 H 0.068 0.932 37 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.250 1.044 11.319 11.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.082 4.082 3 H 0.069 0.931 4 C 0.089 3.911 5 H 0.050 0.950 6 N -0.380 5.380 7 C -0.665 4.665 8 H 0.066 0.934 9 C -0.182 4.182 10 N -0.551 5.551 11 Si 0.892 3.108 12 H -0.209 1.209 13 H -0.216 1.216 14 H -0.216 1.216 15 C -0.091 4.091 16 C -0.154 4.154 17 C -0.155 4.155 18 C -0.154 4.154 19 C -0.155 4.155 20 C -0.149 4.149 21 H 0.052 0.948 22 H 0.073 0.927 23 H 0.070 0.930 24 H 0.131 0.869 25 H 0.141 0.859 26 H 0.081 0.919 27 H 0.094 0.906 28 H 0.071 0.929 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.071 0.929 36 H 0.087 0.913 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -0.887 0.954 10.432 10.513 hybrid contribution -0.340 0.451 0.602 0.826 sum -1.227 1.405 11.034 11.191 Atomic orbital electron populations 1.21743 0.96706 1.00943 0.99827 1.21001 0.94819 0.97909 0.94442 0.93132 1.19068 0.94496 0.86138 0.91390 0.95008 1.59559 1.07902 1.17003 1.53567 1.22762 1.35375 1.14545 0.93781 0.93440 1.25780 0.94610 0.96383 1.01452 1.70853 1.28497 1.22564 1.33205 0.83630 0.75837 0.75491 0.75873 1.20874 1.21594 1.21576 1.21088 0.94308 1.00254 0.93422 1.21689 1.00072 0.99004 0.94685 1.21524 0.95567 1.00605 0.97773 1.21520 0.95958 1.00367 0.97597 1.21533 0.99388 0.99535 0.95053 1.21582 0.96345 0.99777 0.97225 0.94836 0.92732 0.93033 0.86929 0.85949 0.91861 0.90597 0.92859 0.92260 0.92319 0.92996 0.92936 0.92486 0.92267 0.92886 0.91314 0.93094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.58 8.19 37.16 0.30 -2.28 16 2 C -0.06 -1.29 1.75 -90.62 -0.16 -1.45 16 3 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 4 C 0.20 4.78 1.84 -68.86 -0.13 4.66 16 5 H 0.03 0.85 5.62 -51.93 -0.29 0.55 16 6 N -0.85 -19.47 8.39 -5.65 -0.05 -19.52 16 7 C -0.62 -16.97 8.01 -34.44 -0.28 -17.24 16 8 H 0.05 1.31 6.91 -52.49 -0.36 0.94 16 9 C 0.02 0.62 5.37 -17.81 -0.10 0.52 16 10 N -0.91 -26.67 13.13 55.43 0.73 -25.94 16 11 Si 1.06 24.99 29.91 -169.99 -5.08 19.91 16 12 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 13 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 14 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 15 C -0.07 -1.28 1.66 -90.62 -0.15 -1.43 16 16 C -0.12 -1.77 4.85 -26.73 -0.13 -1.90 16 17 C -0.12 -1.53 5.92 -26.73 -0.16 -1.69 16 18 C -0.12 -1.50 5.92 -26.73 -0.16 -1.66 16 19 C -0.12 -1.70 5.92 -26.73 -0.16 -1.86 16 20 C -0.11 -1.94 4.86 -26.73 -0.13 -2.07 16 21 H 0.03 0.56 6.43 -51.93 -0.33 0.22 16 22 H 0.05 1.12 6.86 -51.93 -0.36 0.77 16 23 H 0.05 0.97 6.76 -51.93 -0.35 0.62 16 24 H 0.32 7.22 7.29 -39.29 -0.29 6.93 16 25 H 0.33 8.03 7.13 -39.29 -0.28 7.75 16 26 H 0.27 7.82 5.92 -40.82 -0.24 7.57 16 27 H 0.08 1.45 7.75 -51.93 -0.40 1.04 16 28 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 29 H 0.06 0.88 6.43 -51.93 -0.33 0.54 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.07 1.35 6.32 -51.93 -0.33 1.02 16 37 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 273.75 15.07 4.13 4.13 Total: -1.00 -27.56 273.75 -7.69 -35.24 By element: Atomic # 1 Polarization: 18.74 SS G_CDS: -6.17 Total: 12.57 kcal Atomic # 6 Polarization: -25.15 SS G_CDS: -1.24 Total: -26.39 kcal Atomic # 7 Polarization: -46.14 SS G_CDS: 0.68 Total: -45.46 kcal Atomic # 14 Polarization: 24.99 SS G_CDS: -5.08 Total: 19.91 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -27.56 -7.69 -35.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260960756.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.861 kcal (2) G-P(sol) polarization free energy of solvation -27.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds