Wall clock time and date at job start Mon Mar 30 2020 02:48:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08996 * 109.47310 * 2 1 4 4 C 1.53004 * 109.47062 * 120.00010 * 2 1 3 5 5 C 1.53000 * 109.47416 * 179.97438 * 4 2 1 6 6 C 1.53001 * 109.46916 * 299.99936 * 5 4 2 7 7 C 1.53004 * 109.47091 * 60.00216 * 6 5 4 8 8 H 1.09002 * 109.46539 * 180.02562 * 7 6 5 9 9 C 1.52996 * 109.47440 * 59.99875 * 7 6 5 10 10 C 1.52997 * 109.47258 * 239.99504 * 2 1 3 11 11 C 1.50694 * 109.47613 * 300.00555 * 10 2 1 12 12 H 1.08005 * 120.00051 * 2.82457 * 11 10 2 13 13 C 1.37875 * 120.00451 * 182.83300 * 11 10 2 14 14 N 1.31513 * 120.00500 * 194.37968 * 13 11 10 15 15 Si 1.86801 * 119.99945 * 14.37265 * 13 11 10 16 16 H 1.48505 * 109.46962 * 84.26865 * 15 13 11 17 17 H 1.48503 * 109.47580 * 204.26802 * 15 13 11 18 18 H 1.48504 * 109.47217 * 324.26968 * 15 13 11 19 19 C 1.53004 * 109.47105 * 60.00587 * 10 2 1 20 20 N 1.46902 * 109.46932 * 296.52131 * 19 10 2 21 21 H 1.09003 * 109.47052 * 168.72990 * 1 2 3 22 22 H 1.08997 * 109.47298 * 288.73295 * 1 2 3 23 23 H 1.09001 * 109.46534 * 48.73712 * 1 2 3 24 24 H 1.08996 * 109.47066 * 59.99841 * 4 2 1 25 25 H 1.09007 * 109.46933 * 300.00292 * 4 2 1 26 26 H 1.08994 * 109.47196 * 179.97438 * 5 4 2 27 27 H 1.08999 * 109.46880 * 59.99434 * 5 4 2 28 28 H 1.08996 * 109.47181 * 299.99916 * 6 5 4 29 29 H 1.09004 * 109.47183 * 179.97438 * 6 5 4 30 30 H 1.09007 * 109.46775 * 299.99831 * 9 7 6 31 31 H 1.08998 * 109.46857 * 59.99819 * 9 7 6 32 32 H 1.08994 * 109.47251 * 180.02562 * 9 7 6 33 33 H 0.96995 * 120.00203 * 179.97438 * 14 13 11 34 34 H 1.09000 * 109.47140 * 56.51801 * 19 10 2 35 35 H 1.08997 * 109.47526 * 176.51837 * 19 10 2 36 36 H 1.00900 * 111.00043 * 182.63039 * 20 19 10 37 37 H 1.00906 * 110.99933 * 306.58109 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5700 -0.7219 1.2490 6 6 4.0794 -1.4435 -0.0002 7 6 3.5695 -0.7222 -1.2495 8 1 3.9322 -1.2367 -2.1394 9 6 4.0801 0.7200 -1.2498 10 6 2.0400 -0.7213 -1.2491 11 6 1.5376 -2.1421 -1.2492 12 1 0.8795 -2.4822 -0.4633 13 6 1.9182 -3.0079 -2.2524 14 7 1.2752 -4.1427 -2.4209 15 14 3.3472 -2.5691 -3.3727 16 1 4.6238 -2.9615 -2.7234 17 1 3.2053 -3.2915 -4.6623 18 1 3.3487 -1.1052 -3.6229 19 6 1.5301 -0.0001 -2.4985 20 7 0.0635 -0.0724 -2.5413 21 1 -0.3633 -1.0079 -0.2008 22 1 -0.3634 0.3300 0.9732 23 1 -0.3632 0.6778 -0.7725 24 1 1.6766 -1.7489 1.2493 25 1 1.6765 -0.2074 2.1393 26 1 3.9332 -1.2353 2.1392 27 1 3.9337 0.3056 1.2487 28 1 3.7157 -2.4710 0.0000 29 1 5.1695 -1.4436 -0.0006 30 1 3.7170 1.2342 -0.3598 31 1 5.1701 0.7195 -1.2500 32 1 3.7164 1.2340 -2.1396 33 1 1.5428 -4.7516 -3.1269 34 1 1.8417 1.0440 -2.4679 35 1 1.9435 -0.4766 -3.3873 36 1 -0.2955 0.3597 -3.3794 37 1 -0.2540 -1.0269 -2.4622 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260978307.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:09 Heat of formation + Delta-G solvation = -12.274349 kcal Electronic energy + Delta-G solvation = -16076.287257 eV Core-core repulsion = 13852.867987 eV Total energy + Delta-G solvation = -2223.419270 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.03504 -35.65644 -34.22944 -33.70566 -31.46964 -29.04169 -27.25696 -25.64970 -24.24663 -22.59463 -21.21069 -20.08071 -17.31391 -17.12844 -16.45774 -15.91887 -15.67872 -15.34851 -14.83789 -14.50129 -14.05869 -13.60984 -13.58852 -13.19426 -12.91729 -12.80186 -12.50504 -12.21151 -12.09193 -11.92549 -11.73637 -11.50573 -11.34045 -11.25217 -10.75784 -10.41529 -10.22796 -10.06547 -8.82293 -8.20273 -6.10795 1.29412 1.34623 1.41990 2.36775 3.15982 3.94294 4.05373 4.13310 4.29216 4.48790 4.55633 4.68098 4.69941 4.81285 4.85509 4.92325 4.98331 5.02984 5.15369 5.19106 5.21992 5.29094 5.31303 5.43108 5.46803 5.64360 5.66723 5.71866 5.82885 5.91328 6.03158 6.15404 6.49860 6.66377 6.85854 7.02126 7.48876 8.95678 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.025988 B = 0.018907 C = 0.016042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.176188 B = 1480.574032 C = 1745.030092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.056 4.056 3 H 0.061 0.939 4 C -0.108 4.108 5 C -0.104 4.104 6 C -0.105 4.105 7 C -0.104 4.104 8 H 0.030 0.970 9 C -0.144 4.144 10 C 0.052 3.948 11 C -0.456 4.456 12 H 0.041 0.959 13 C 0.020 3.980 14 N -0.946 5.946 15 Si 0.914 3.086 16 H -0.290 1.290 17 H -0.329 1.329 18 H -0.216 1.216 19 C 0.062 3.938 20 N -0.829 5.829 21 H 0.029 0.971 22 H 0.024 0.976 23 H 0.091 0.909 24 H 0.036 0.964 25 H 0.059 0.941 26 H 0.059 0.941 27 H 0.075 0.925 28 H 0.037 0.963 29 H 0.053 0.947 30 H 0.074 0.926 31 H 0.055 0.945 32 H 0.052 0.948 33 H 0.256 0.744 34 H 0.064 0.936 35 H 0.005 0.995 36 H 0.326 0.674 37 H 0.343 0.657 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.989 10.752 2.809 11.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.074 4.074 3 H 0.079 0.921 4 C -0.145 4.145 5 C -0.141 4.141 6 C -0.143 4.143 7 C -0.123 4.123 8 H 0.048 0.952 9 C -0.201 4.201 10 C 0.051 3.949 11 C -0.495 4.495 12 H 0.060 0.940 13 C -0.176 4.176 14 N -0.588 5.588 15 Si 0.748 3.252 16 H -0.219 1.219 17 H -0.260 1.260 18 H -0.141 1.141 19 C -0.069 4.069 20 N -0.359 5.359 21 H 0.048 0.952 22 H 0.043 0.957 23 H 0.110 0.890 24 H 0.055 0.945 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.094 0.906 28 H 0.056 0.944 29 H 0.072 0.928 30 H 0.092 0.908 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.065 0.935 34 H 0.083 0.917 35 H 0.023 0.977 36 H 0.137 0.863 37 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 3.995 11.049 3.389 12.228 hybrid contribution 0.761 -1.554 -1.686 2.416 sum 4.756 9.495 1.703 10.755 Atomic orbital electron populations 1.22001 0.95377 1.02037 0.99594 1.20825 0.95885 0.97085 0.93645 0.92066 1.21535 0.95611 0.99922 0.97442 1.21435 0.95639 1.00591 0.96461 1.21402 0.98357 0.99167 0.95332 1.21600 0.97831 0.96373 0.96475 0.95194 1.21948 1.00389 0.95428 1.02349 1.18523 0.90312 0.93426 0.92620 1.21014 1.26092 0.94565 1.07782 0.94050 1.25558 0.98162 0.95260 0.98583 1.70094 1.41500 1.12971 1.34192 0.86837 0.81465 0.79756 0.77125 1.21852 1.25966 1.14077 1.22258 0.88694 0.98554 0.97344 1.59263 1.09265 1.24807 1.42526 0.95228 0.95695 0.89042 0.94495 0.92238 0.92246 0.90642 0.94374 0.92808 0.90769 0.92593 0.92857 0.93540 0.91739 0.97669 0.86273 0.84301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.98 7.74 71.98 0.56 -4.43 16 2 C -0.06 -2.07 1.73 -10.79 -0.02 -2.09 16 3 H 0.06 2.04 6.43 -2.39 -0.02 2.03 16 4 C -0.11 -3.86 4.95 30.60 0.15 -3.71 16 5 C -0.10 -3.35 5.65 30.59 0.17 -3.18 16 6 C -0.10 -4.00 5.19 30.60 0.16 -3.84 16 7 C -0.10 -4.07 1.43 -10.81 -0.02 -4.09 16 8 H 0.03 1.30 2.04 -2.39 0.00 1.30 16 9 C -0.14 -4.43 8.15 71.98 0.59 -3.84 16 10 C 0.05 2.16 0.03 -52.94 0.00 2.15 16 11 C -0.46 -23.40 4.42 25.60 0.11 -23.29 16 12 H 0.04 2.43 5.99 -2.91 -0.02 2.41 16 13 C 0.02 1.12 5.36 84.65 0.45 1.58 16 14 N -0.95 -57.42 13.96 21.45 0.30 -57.12 16 15 Si 0.91 44.27 23.00 68.60 1.58 45.85 16 16 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 17 H -0.33 -16.76 7.11 99.48 0.71 -16.06 16 18 H -0.22 -9.31 4.44 99.48 0.44 -8.87 16 19 C 0.06 2.43 4.87 86.30 0.42 2.85 16 20 N -0.83 -30.71 5.94 -186.71 -1.11 -31.82 16 21 H 0.03 1.28 5.95 -2.39 -0.01 1.26 16 22 H 0.02 0.83 8.10 -2.39 -0.02 0.81 16 23 H 0.09 3.32 5.89 -2.39 -0.01 3.31 16 24 H 0.04 1.57 6.67 -2.39 -0.02 1.55 16 25 H 0.06 1.86 8.14 -2.38 -0.02 1.84 16 26 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 27 H 0.08 2.09 6.43 -2.39 -0.02 2.07 16 28 H 0.04 1.72 7.21 -2.39 -0.02 1.70 16 29 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 30 H 0.07 2.06 4.81 -2.38 -0.01 2.05 16 31 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.05 1.58 6.51 -2.39 -0.02 1.56 16 33 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 34 H 0.06 2.25 6.62 -2.39 -0.02 2.23 16 35 H 0.01 0.23 4.22 -2.39 -0.01 0.22 16 36 H 0.33 10.26 9.08 -89.69 -0.81 9.45 16 37 H 0.34 14.81 7.30 -89.69 -0.66 14.15 16 Total: -1.00 -58.76 245.20 2.70 -56.06 By element: Atomic # 1 Polarization: 29.55 SS G_CDS: -0.65 Total: 28.90 kcal Atomic # 6 Polarization: -44.46 SS G_CDS: 2.58 Total: -41.88 kcal Atomic # 7 Polarization: -88.13 SS G_CDS: -0.81 Total: -88.94 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 1.58 Total: 45.85 kcal Total: -58.76 2.70 -56.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260978307.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.791 kcal (2) G-P(sol) polarization free energy of solvation -58.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds