Wall clock time and date at job start Mon Mar 30 2020 02:40:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 108.76401 * 2 1 4 4 C 1.54265 * 109.18271 * 241.55094 * 2 1 3 5 5 C 1.54057 * 112.94751 * 197.65678 * 4 2 1 6 6 C 1.50474 * 112.50200 * 318.17321 * 5 4 2 7 7 C 1.54238 * 108.52889 * 94.14703 * 6 5 4 8 8 C 1.45550 * 112.40303 * 280.02114 * 7 6 5 9 9 C 1.50469 * 108.87784 * 118.51185 * 2 1 3 10 10 C 1.50708 * 109.62811 * 95.22600 * 9 2 1 11 11 H 1.08003 * 119.99296 * 336.61264 * 10 9 2 12 12 C 1.37871 * 120.00093 * 156.61671 * 10 9 2 13 13 N 1.31515 * 120.00241 * 21.14273 * 12 10 9 14 14 Si 1.86801 * 120.00087 * 201.14038 * 12 10 9 15 15 H 1.48501 * 109.46820 * 0.02562 * 14 12 10 16 16 H 1.48496 * 109.47199 * 240.00425 * 14 12 10 17 17 H 1.48491 * 109.47047 * 119.99913 * 14 12 10 18 18 C 1.53001 * 109.63319 * 334.83670 * 9 2 1 19 19 N 1.46898 * 109.47031 * 176.54905 * 18 9 2 20 20 H 1.08997 * 109.47192 * 301.47836 * 1 2 3 21 21 H 1.08986 * 109.47636 * 61.48897 * 1 2 3 22 22 H 1.09001 * 109.46634 * 181.48686 * 1 2 3 23 23 H 1.09000 * 108.83147 * 76.69372 * 4 2 1 24 24 H 1.09003 * 108.56650 * 318.43373 * 4 2 1 25 25 H 1.09003 * 108.87759 * 197.39379 * 5 4 2 26 26 H 1.09003 * 108.79831 * 78.89524 * 5 4 2 27 27 H 1.09006 * 109.62024 * 334.43491 * 6 5 4 28 28 H 1.08997 * 109.78933 * 213.95986 * 6 5 4 29 29 H 1.08993 * 108.89742 * 159.26505 * 7 6 5 30 30 H 1.08998 * 108.81560 * 40.71881 * 7 6 5 31 31 H 1.08993 * 108.89047 * 301.17365 * 8 7 6 32 32 H 1.09005 * 108.88855 * 182.69164 * 8 7 6 33 33 H 0.97010 * 119.99878 * 7.04271 * 13 12 10 34 34 H 1.09001 * 109.47011 * 296.55009 * 18 9 2 35 35 H 1.09001 * 109.46520 * 56.54686 * 18 9 2 36 36 H 1.00895 * 111.00003 * 155.91803 * 19 18 9 37 37 H 1.00907 * 110.99969 * 279.86588 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8807 1.0321 0.0000 4 6 2.0369 -0.6941 -1.2810 5 6 3.5110 -1.1311 -1.1843 6 6 4.3777 -0.0919 -0.5260 7 6 4.4800 -0.4200 0.9776 8 6 3.3088 0.0190 1.7220 9 6 2.0169 -0.6796 1.2511 10 6 2.3030 -2.1305 0.9605 11 1 1.8189 -2.6201 0.1284 12 6 3.1827 -2.8326 1.7568 13 7 3.4504 -2.4093 2.9728 14 14 3.9943 -4.3851 1.1084 15 1 3.5296 -4.6446 -0.2779 16 1 3.6299 -5.5336 1.9763 17 1 5.4690 -4.2108 1.1111 18 6 0.9491 -0.5748 2.3418 19 7 1.3929 -1.3098 3.5338 20 1 -0.3633 0.5366 0.8764 21 1 -0.3634 0.4905 -0.9029 22 1 -0.3633 -1.0274 0.0267 23 1 1.9283 -0.0068 -2.1201 24 1 1.4208 -1.5740 -1.4660 25 1 3.8893 -1.3208 -2.1888 26 1 3.5667 -2.0539 -0.6068 27 1 3.9305 0.8936 -0.6563 28 1 5.3722 -0.1045 -0.9720 29 1 5.3628 0.0710 1.3868 30 1 4.5895 -1.4980 1.0956 31 1 3.1940 1.0956 1.5964 32 1 3.4616 -0.1968 2.7795 33 1 2.9547 -1.6642 3.3472 34 1 0.7932 0.4731 2.5982 35 1 0.0149 -1.0027 1.9779 36 1 0.9418 -0.9575 4.3646 37 1 1.2331 -2.3005 3.4281 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260980109.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:10 Heat of formation + Delta-G solvation = 29.325117 kcal Electronic energy + Delta-G solvation = -16215.303770 eV Core-core repulsion = 13993.688388 eV Total energy + Delta-G solvation = -2221.615382 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.24093 -34.26545 -33.18887 -30.86375 -30.27446 -26.84922 -25.30055 -23.57750 -22.05257 -21.05593 -18.70981 -18.33815 -15.50700 -14.90193 -14.73800 -14.28357 -13.89656 -13.54088 -12.99242 -12.89067 -12.06889 -11.69724 -11.57393 -11.44087 -11.18102 -10.78030 -10.72275 -10.40157 -10.16384 -9.94077 -9.76211 -9.58001 -9.30829 -9.09490 -8.97275 -8.73779 -8.19589 -7.61959 -7.44872 -5.48418 -3.54312 3.56776 3.59839 3.71938 4.75702 5.55416 5.70236 5.75994 5.87846 5.94304 6.13828 6.20747 6.23675 6.35734 6.43044 6.47839 6.66707 6.72089 6.75322 6.77620 6.79233 6.86986 6.91018 7.16430 7.30969 7.33569 7.44215 7.58914 7.73872 7.82935 7.87833 8.04231 8.29148 8.46146 8.68498 8.95455 9.53024 10.12305 11.66945 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.025334 B = 0.019449 C = 0.015230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.955225 B = 1439.314574 C = 1838.019529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.067 4.067 3 H 0.038 0.962 4 C -0.076 4.076 5 C -0.125 4.125 6 C -0.104 4.104 7 C -0.108 4.108 8 C -0.094 4.094 9 C 0.072 3.928 10 C -0.605 4.605 11 H 0.045 0.955 12 C 0.047 3.953 13 N -0.912 5.912 14 Si 1.014 2.986 15 H -0.292 1.292 16 H -0.296 1.296 17 H -0.289 1.289 18 C 0.069 3.931 19 N -0.809 5.809 20 H 0.045 0.955 21 H 0.030 0.970 22 H 0.053 0.947 23 H 0.022 0.978 24 H 0.049 0.951 25 H 0.020 0.980 26 H 0.112 0.888 27 H 0.040 0.960 28 H 0.036 0.964 29 H 0.016 0.984 30 H 0.097 0.903 31 H 0.006 0.994 32 H 0.071 0.929 33 H 0.335 0.665 34 H 0.026 0.974 35 H 0.019 0.981 36 H 0.302 0.698 37 H 0.353 0.647 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.936 3.292 -3.153 5.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.086 4.086 3 H 0.056 0.944 4 C -0.114 4.114 5 C -0.162 4.162 6 C -0.142 4.142 7 C -0.145 4.145 8 C -0.132 4.132 9 C 0.071 3.929 10 C -0.642 4.642 11 H 0.063 0.937 12 C -0.165 4.165 13 N -0.567 5.567 14 Si 0.845 3.155 15 H -0.219 1.219 16 H -0.223 1.223 17 H -0.215 1.215 18 C -0.062 4.062 19 N -0.340 5.340 20 H 0.064 0.936 21 H 0.049 0.951 22 H 0.072 0.928 23 H 0.041 0.959 24 H 0.068 0.932 25 H 0.038 0.962 26 H 0.130 0.870 27 H 0.059 0.941 28 H 0.055 0.945 29 H 0.035 0.965 30 H 0.115 0.885 31 H 0.025 0.975 32 H 0.089 0.911 33 H 0.172 0.828 34 H 0.045 0.955 35 H 0.038 0.962 36 H 0.113 0.887 37 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -1.148 2.505 -2.892 3.995 hybrid contribution -2.026 0.836 -0.422 2.232 sum -3.175 3.340 -3.314 5.676 Atomic orbital electron populations 1.22004 0.97786 1.00946 0.99173 1.20888 0.93192 0.97580 0.96925 0.94369 1.21570 0.96688 0.98152 0.94966 1.21630 0.93666 1.03014 0.97870 1.21197 0.97384 0.98251 0.97342 1.20501 0.96235 1.04631 0.93123 1.20365 0.96541 0.94850 1.01448 1.17982 0.90296 0.96095 0.88497 1.21547 1.31616 0.94505 1.16579 0.93687 1.24865 0.96140 1.00763 0.94698 1.70652 1.42942 1.30628 1.12485 0.84501 0.77375 0.78220 0.75363 1.21853 1.22335 1.21542 1.22399 0.97539 0.93923 0.92292 1.59091 1.61808 1.09405 1.03745 0.93569 0.95070 0.92788 0.95945 0.93232 0.96172 0.87035 0.94122 0.94509 0.96493 0.88470 0.97493 0.91066 0.82795 0.95542 0.96242 0.88688 0.83112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.60 7.68 37.16 0.29 -2.32 16 2 C -0.07 -1.38 1.98 -91.22 -0.18 -1.56 16 3 H 0.04 0.79 6.65 -51.93 -0.35 0.44 16 4 C -0.08 -1.55 4.53 -25.52 -0.12 -1.67 16 5 C -0.13 -2.65 5.25 -27.44 -0.14 -2.80 16 6 C -0.10 -2.17 5.61 -27.35 -0.15 -2.32 16 7 C -0.11 -2.51 5.02 -29.60 -0.15 -2.66 16 8 C -0.09 -2.22 3.67 -29.60 -0.11 -2.33 16 9 C 0.07 1.64 0.38 -156.27 -0.06 1.58 16 10 C -0.60 -15.06 3.97 -34.44 -0.14 -15.19 16 11 H 0.04 1.18 6.13 -52.48 -0.32 0.86 16 12 C 0.05 1.21 2.50 -17.82 -0.04 1.17 16 13 N -0.91 -24.68 11.40 55.43 0.63 -24.05 16 14 Si 1.01 24.09 28.34 -169.99 -4.82 19.27 16 15 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 16 H -0.30 -7.08 7.11 56.52 0.40 -6.68 16 17 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 18 C 0.07 1.47 4.35 -3.82 -0.02 1.45 16 19 N -0.81 -17.20 5.38 -10.37 -0.06 -17.26 16 20 H 0.05 0.80 6.38 -51.93 -0.33 0.47 16 21 H 0.03 0.51 8.14 -51.94 -0.42 0.08 16 22 H 0.05 1.03 7.62 -51.93 -0.40 0.64 16 23 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 24 H 0.05 1.03 7.00 -51.93 -0.36 0.67 16 25 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.11 2.64 3.32 -51.93 -0.17 2.47 16 27 H 0.04 0.82 6.99 -51.93 -0.36 0.45 16 28 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.10 2.50 3.77 -51.93 -0.20 2.31 16 31 H 0.01 0.15 7.48 -51.93 -0.39 -0.24 16 32 H 0.07 1.83 5.46 -51.93 -0.28 1.54 16 33 H 0.34 8.69 2.25 -79.56 -0.18 8.51 16 34 H 0.03 0.53 7.80 -51.93 -0.41 0.13 16 35 H 0.02 0.41 6.09 -51.93 -0.32 0.09 16 36 H 0.30 5.50 9.08 -39.29 -0.36 5.14 16 37 H 0.35 8.03 7.57 -39.29 -0.30 7.73 16 LS Contribution 245.66 15.07 3.70 3.70 Total: -1.00 -26.08 245.66 -6.99 -33.06 By element: Atomic # 1 Polarization: 17.53 SS G_CDS: -5.62 Total: 11.90 kcal Atomic # 6 Polarization: -25.81 SS G_CDS: -0.82 Total: -26.64 kcal Atomic # 7 Polarization: -41.88 SS G_CDS: 0.58 Total: -41.30 kcal Atomic # 14 Polarization: 24.09 SS G_CDS: -4.82 Total: 19.27 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -26.08 -6.99 -33.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260980109.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.390 kcal (2) G-P(sol) polarization free energy of solvation -26.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.065 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds