Wall clock time and date at job start Mon Mar 30 2020 03:32:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09000 * 109.47350 * 2 1 4 4 C 1.50704 * 109.47285 * 239.99912 * 2 1 3 5 5 H 1.07995 * 119.99793 * 240.00191 * 4 2 1 6 6 C 1.37878 * 119.99849 * 59.99902 * 4 2 1 7 7 N 1.31513 * 119.99865 * 0.02562 * 6 4 2 8 8 Si 1.86794 * 119.99686 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47369 * 90.00111 * 8 6 4 10 10 H 1.48503 * 109.46882 * 210.00012 * 8 6 4 11 11 H 1.48501 * 109.47188 * 329.99963 * 8 6 4 12 12 C 1.53002 * 109.47095 * 119.99682 * 2 1 3 13 13 C 1.53002 * 109.47185 * 294.99732 * 12 2 1 14 14 H 1.08999 * 109.49823 * 54.92309 * 13 12 2 15 15 C 1.53119 * 109.50057 * 174.99741 * 13 12 2 16 16 C 1.53124 * 109.15796 * 177.63567 * 15 13 12 17 17 C 1.53037 * 109.28148 * 302.35024 * 16 15 13 18 18 N 1.46844 * 109.52152 * 59.17731 * 17 16 15 19 19 C 1.46906 * 110.99887 * 174.16043 * 18 17 16 20 20 C 1.46850 * 111.19991 * 298.25708 * 18 17 16 21 21 H 1.09000 * 109.47350 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.47482 * 300.00155 * 1 2 3 23 23 H 1.08999 * 109.47435 * 60.00001 * 1 2 3 24 24 H 0.97004 * 119.99545 * 180.02562 * 7 6 4 25 25 H 1.08997 * 109.46768 * 175.00141 * 12 2 1 26 26 H 1.08994 * 109.47163 * 55.00482 * 12 2 1 27 27 H 1.09001 * 109.51997 * 57.73756 * 15 13 12 28 28 H 1.08995 * 109.57988 * 297.57553 * 15 13 12 29 29 H 1.08997 * 109.50392 * 182.40446 * 16 15 13 30 30 H 1.09008 * 109.53016 * 62.31007 * 16 15 13 31 31 H 1.08995 * 109.46089 * 299.16330 * 17 16 15 32 32 H 1.08993 * 109.46053 * 179.19513 * 17 16 15 33 33 H 1.08999 * 109.46692 * 56.05113 * 19 18 17 34 34 H 1.09002 * 109.46991 * 176.04490 * 19 18 17 35 35 H 1.09000 * 109.47202 * 296.04782 * 19 18 17 36 36 H 1.09005 * 109.46314 * 181.76064 * 20 18 17 37 37 H 1.08998 * 109.46244 * 301.72632 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9435 0.8302 -2.6034 8 14 2.3213 -1.1204 -4.0079 9 1 1.3428 -2.1618 -4.4118 10 1 2.4866 -0.1414 -5.1122 11 1 3.6293 -1.7584 -3.7121 12 6 2.0399 -0.7212 1.2493 13 6 1.6352 0.0691 2.4953 14 1 0.5565 0.2253 2.4926 15 6 2.0353 -0.7134 3.7492 16 6 1.6805 0.1104 4.9902 17 6 2.3916 1.4636 4.9187 18 7 1.9749 2.1733 3.7025 19 6 2.5303 3.5329 3.6699 20 6 2.3476 1.4235 2.4962 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 0.7089 1.1613 -3.4844 25 1 3.1262 -0.7994 1.2056 26 1 1.6054 -1.7197 1.2952 27 1 3.1085 -0.9036 3.7329 28 1 1.4978 -1.6613 3.7752 29 1 2.0017 -0.4227 5.8850 30 1 0.6024 0.2673 5.0275 31 1 3.4699 1.3065 4.8961 32 1 2.1296 2.0581 5.7939 33 1 3.6155 3.4842 3.7595 34 1 2.2647 4.0114 2.7273 35 1 2.1229 4.1118 4.4988 36 1 2.0538 1.9889 1.6118 37 1 3.4262 1.2665 2.4849 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261025325.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:37 Heat of formation + Delta-G solvation = -25.171938 kcal Electronic energy + Delta-G solvation = -14713.542130 eV Core-core repulsion = 12489.563578 eV Total energy + Delta-G solvation = -2223.978552 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.89300 -35.30930 -33.18443 -31.77724 -29.44936 -26.53508 -25.35646 -24.93188 -22.63488 -21.57689 -19.57348 -18.61771 -16.21792 -15.35926 -14.99028 -14.55630 -14.27605 -14.07690 -13.37220 -12.84420 -12.60267 -12.46183 -12.05650 -11.88490 -11.63529 -11.28852 -10.93504 -10.85960 -10.81020 -10.60267 -10.22934 -10.08824 -9.95780 -9.87707 -9.40817 -8.91926 -8.61328 -8.22610 -8.05802 -5.90555 -3.96586 3.33951 3.40531 3.43686 4.20687 4.49318 5.08151 5.15089 5.22789 5.39648 5.44878 5.58499 5.62783 5.75439 5.80980 5.92442 6.01758 6.06287 6.17313 6.25873 6.30495 6.48322 6.53244 6.62272 6.80571 6.96136 7.07623 7.16051 7.34996 7.36889 7.41980 7.55650 7.82299 8.10673 8.28129 8.56542 9.08025 9.67734 11.15011 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.046668 B = 0.007336 C = 0.006895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.835365 B = 3815.701940 C = 4059.938211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.042 3.958 3 H 0.026 0.974 4 C -0.512 4.512 5 H 0.052 0.948 6 C 0.060 3.940 7 N -0.891 5.891 8 Si 0.887 3.113 9 H -0.282 1.282 10 H -0.287 1.287 11 H -0.275 1.275 12 C -0.101 4.101 13 C -0.085 4.085 14 H 0.078 0.922 15 C -0.117 4.117 16 C -0.116 4.116 17 C 0.057 3.943 18 N -0.545 5.545 19 C 0.026 3.974 20 C 0.062 3.938 21 H 0.021 0.979 22 H 0.011 0.989 23 H 0.078 0.922 24 H 0.258 0.742 25 H 0.043 0.957 26 H 0.048 0.952 27 H 0.053 0.947 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.068 0.932 31 H 0.027 0.973 32 H 0.066 0.934 33 H 0.020 0.980 34 H 0.069 0.931 35 H 0.062 0.938 36 H 0.085 0.915 37 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.171 1.419 12.619 12.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.024 3.976 3 H 0.044 0.956 4 C -0.550 4.550 5 H 0.070 0.930 6 C -0.141 4.141 7 N -0.530 5.530 8 Si 0.716 3.284 9 H -0.208 1.208 10 H -0.213 1.213 11 H -0.200 1.200 12 C -0.139 4.139 13 C -0.103 4.103 14 H 0.096 0.904 15 C -0.155 4.155 16 C -0.154 4.154 17 C -0.071 4.071 18 N -0.269 5.269 19 C -0.122 4.122 20 C -0.065 4.065 21 H 0.040 0.960 22 H 0.030 0.970 23 H 0.096 0.904 24 H 0.068 0.932 25 H 0.062 0.938 26 H 0.067 0.933 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.087 0.913 31 H 0.045 0.955 32 H 0.085 0.915 33 H 0.039 0.961 34 H 0.088 0.912 35 H 0.081 0.919 36 H 0.103 0.897 37 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 1.593 1.581 12.488 12.688 hybrid contribution 1.228 -0.515 -0.945 1.633 sum 2.821 1.066 11.542 11.930 Atomic orbital electron populations 1.21825 0.99004 0.98632 0.99955 1.18681 0.92512 0.95702 0.90706 0.95556 1.21266 1.30708 1.12139 0.90903 0.92956 1.24963 0.95243 0.95020 0.98860 1.69900 1.37055 1.23007 1.23048 0.86674 0.79223 0.79466 0.83085 1.20788 1.21328 1.20046 1.21686 0.99429 0.98335 0.94438 1.21287 1.00982 0.93522 0.94535 0.90370 1.21681 1.00631 0.98422 0.94755 1.21583 1.01150 0.94824 0.97816 1.22053 0.96958 0.95284 0.92819 1.61937 1.59847 1.02470 1.02688 1.22327 0.96830 0.90496 1.02558 1.22245 0.97059 0.95254 0.91906 0.95990 0.97021 0.90363 0.93199 0.93795 0.93321 0.92796 0.92124 0.92242 0.91308 0.95458 0.91526 0.96133 0.91223 0.91910 0.89650 0.95514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.37 8.73 37.15 0.32 -3.05 16 2 C 0.04 1.06 2.17 -91.77 -0.20 0.86 16 3 H 0.03 0.71 6.37 -51.93 -0.33 0.38 16 4 C -0.51 -14.31 8.56 -34.44 -0.29 -14.61 16 5 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 6 C 0.06 1.69 5.30 -17.82 -0.09 1.59 16 7 N -0.89 -25.96 11.32 55.43 0.63 -25.33 16 8 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 9 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 10 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 12 C -0.10 -2.11 4.09 -26.73 -0.11 -2.22 16 13 C -0.08 -1.51 2.21 -90.54 -0.20 -1.72 16 14 H 0.08 1.50 6.34 -51.93 -0.33 1.17 16 15 C -0.12 -1.75 5.29 -26.61 -0.14 -1.89 16 16 C -0.12 -1.51 6.09 -26.65 -0.16 -1.67 16 17 C 0.06 0.76 5.46 -3.84 -0.02 0.74 16 18 N -0.55 -8.43 4.91 -242.96 -1.19 -9.62 16 19 C 0.03 0.35 9.62 60.07 0.58 0.93 16 20 C 0.06 1.10 4.49 -3.83 -0.02 1.08 16 21 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 22 H 0.01 0.25 6.46 -51.93 -0.34 -0.09 16 23 H 0.08 2.14 6.07 -51.93 -0.32 1.83 16 24 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 25 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 28 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.07 0.92 8.14 -51.92 -0.42 0.50 16 31 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.07 0.78 8.12 -51.93 -0.42 0.35 16 33 H 0.02 0.26 8.14 -51.93 -0.42 -0.17 16 34 H 0.07 0.94 8.02 -51.93 -0.42 0.52 16 35 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.09 1.68 6.41 -51.93 -0.33 1.35 16 37 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 282.52 15.07 4.26 4.26 Total: -1.00 -28.65 282.52 -8.34 -36.99 By element: Atomic # 1 Polarization: 3.72 SS G_CDS: -6.67 Total: -2.95 kcal Atomic # 6 Polarization: -19.62 SS G_CDS: -0.34 Total: -19.95 kcal Atomic # 7 Polarization: -34.39 SS G_CDS: -0.57 Total: -34.95 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -28.65 -8.34 -36.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261025325.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.816 kcal (2) G-P(sol) polarization free energy of solvation -28.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds