Wall clock time and date at job start Mon Mar 30 2020 03:32:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09000 * 109.47350 * 2 1 4 4 C 1.50704 * 109.47285 * 239.99912 * 2 1 3 5 5 H 1.07995 * 119.99793 * 240.00191 * 4 2 1 6 6 C 1.37878 * 119.99849 * 59.99902 * 4 2 1 7 7 N 1.31513 * 119.99865 * 0.02562 * 6 4 2 8 8 Si 1.86794 * 119.99686 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47369 * 90.00111 * 8 6 4 10 10 H 1.48503 * 109.46882 * 210.00012 * 8 6 4 11 11 H 1.48501 * 109.47188 * 329.99963 * 8 6 4 12 12 C 1.53002 * 109.47095 * 119.99682 * 2 1 3 13 13 C 1.53002 * 109.47185 * 294.99732 * 12 2 1 14 14 H 1.08999 * 109.49823 * 54.92309 * 13 12 2 15 15 C 1.53119 * 109.50057 * 174.99741 * 13 12 2 16 16 C 1.53124 * 109.15796 * 177.63567 * 15 13 12 17 17 C 1.53037 * 109.28148 * 302.35024 * 16 15 13 18 18 N 1.46844 * 109.52152 * 59.17731 * 17 16 15 19 19 C 1.46906 * 110.99887 * 174.16043 * 18 17 16 20 20 C 1.46850 * 111.19991 * 298.25708 * 18 17 16 21 21 H 1.09000 * 109.47350 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.47482 * 300.00155 * 1 2 3 23 23 H 1.08999 * 109.47435 * 60.00001 * 1 2 3 24 24 H 0.97004 * 119.99545 * 180.02562 * 7 6 4 25 25 H 1.08997 * 109.46768 * 175.00141 * 12 2 1 26 26 H 1.08994 * 109.47163 * 55.00482 * 12 2 1 27 27 H 1.09001 * 109.51997 * 57.73756 * 15 13 12 28 28 H 1.08995 * 109.57988 * 297.57553 * 15 13 12 29 29 H 1.08997 * 109.50392 * 182.40446 * 16 15 13 30 30 H 1.09008 * 109.53016 * 62.31007 * 16 15 13 31 31 H 1.08995 * 109.46089 * 299.16330 * 17 16 15 32 32 H 1.08993 * 109.46053 * 179.19513 * 17 16 15 33 33 H 1.08999 * 109.46692 * 56.05113 * 19 18 17 34 34 H 1.09002 * 109.46991 * 176.04490 * 19 18 17 35 35 H 1.09000 * 109.47202 * 296.04782 * 19 18 17 36 36 H 1.09005 * 109.46314 * 181.76064 * 20 18 17 37 37 H 1.08998 * 109.46244 * 301.72632 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9435 0.8302 -2.6034 8 14 2.3213 -1.1204 -4.0079 9 1 1.3428 -2.1618 -4.4118 10 1 2.4866 -0.1414 -5.1122 11 1 3.6293 -1.7584 -3.7121 12 6 2.0399 -0.7212 1.2493 13 6 1.6352 0.0691 2.4953 14 1 0.5565 0.2253 2.4926 15 6 2.0353 -0.7134 3.7492 16 6 1.6805 0.1104 4.9902 17 6 2.3916 1.4636 4.9187 18 7 1.9749 2.1733 3.7025 19 6 2.5303 3.5329 3.6699 20 6 2.3476 1.4235 2.4962 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 0.7089 1.1613 -3.4844 25 1 3.1262 -0.7994 1.2056 26 1 1.6054 -1.7197 1.2952 27 1 3.1085 -0.9036 3.7329 28 1 1.4978 -1.6613 3.7752 29 1 2.0017 -0.4227 5.8850 30 1 0.6024 0.2673 5.0275 31 1 3.4699 1.3065 4.8961 32 1 2.1296 2.0581 5.7939 33 1 3.6155 3.4842 3.7595 34 1 2.2647 4.0114 2.7273 35 1 2.1229 4.1118 4.4988 36 1 2.0538 1.9889 1.6118 37 1 3.4262 1.2665 2.4849 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261025325.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:37 Heat of formation + Delta-G solvation = -41.937337 kcal Electronic energy + Delta-G solvation = -14714.269132 eV Core-core repulsion = 12489.563578 eV Total energy + Delta-G solvation = -2224.705554 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.18645 -37.04638 -34.73319 -33.38282 -31.11161 -27.71828 -27.28934 -26.72957 -23.90901 -23.02736 -21.00791 -20.25796 -18.29848 -16.68284 -16.56447 -16.26286 -15.46572 -15.30074 -14.96572 -14.58100 -14.14736 -13.86207 -13.52191 -13.21336 -13.09140 -12.93311 -12.79952 -12.56269 -12.30770 -12.13909 -11.98162 -11.74388 -11.52376 -11.39857 -11.08593 -10.69604 -10.62490 -10.34186 -9.24583 -8.05992 -6.20053 1.40758 1.41135 1.51400 2.44300 3.04557 3.20755 3.89445 4.00244 4.02584 4.22784 4.43897 4.53097 4.58889 4.60697 4.71552 4.79903 4.82095 4.85874 4.95455 4.99336 5.03622 5.10415 5.15252 5.21410 5.28899 5.37557 5.47656 5.49839 5.64122 5.67155 6.03773 6.15652 6.21837 6.24761 6.43444 6.93604 7.48060 8.98282 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.046668 B = 0.007336 C = 0.006895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.835365 B = 3815.701940 C = 4059.938211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.040 3.960 3 H 0.000 1.000 4 C -0.535 4.535 5 H 0.050 0.950 6 C 0.010 3.990 7 N -0.918 5.918 8 Si 0.952 3.048 9 H -0.275 1.275 10 H -0.284 1.284 11 H -0.269 1.269 12 C -0.090 4.090 13 C -0.078 4.078 14 H 0.065 0.935 15 C -0.114 4.114 16 C -0.111 4.111 17 C 0.054 3.946 18 N -0.558 5.558 19 C 0.025 3.975 20 C 0.071 3.929 21 H 0.022 0.978 22 H 0.029 0.971 23 H 0.048 0.952 24 H 0.259 0.741 25 H 0.040 0.960 26 H 0.049 0.951 27 H 0.057 0.943 28 H 0.068 0.932 29 H 0.088 0.912 30 H 0.065 0.935 31 H 0.030 0.970 32 H 0.089 0.911 33 H 0.027 0.973 34 H 0.058 0.942 35 H 0.085 0.915 36 H 0.053 0.947 37 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.642 0.793 14.080 14.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.021 3.979 3 H 0.018 0.982 4 C -0.573 4.573 5 H 0.068 0.932 6 C -0.188 4.188 7 N -0.558 5.558 8 Si 0.777 3.223 9 H -0.201 1.201 10 H -0.209 1.209 11 H -0.193 1.193 12 C -0.128 4.128 13 C -0.097 4.097 14 H 0.083 0.917 15 C -0.151 4.151 16 C -0.149 4.149 17 C -0.073 4.073 18 N -0.282 5.282 19 C -0.123 4.123 20 C -0.057 4.057 21 H 0.041 0.959 22 H 0.048 0.952 23 H 0.067 0.933 24 H 0.068 0.932 25 H 0.058 0.942 26 H 0.068 0.932 27 H 0.075 0.925 28 H 0.087 0.913 29 H 0.107 0.893 30 H 0.084 0.916 31 H 0.048 0.952 32 H 0.108 0.892 33 H 0.045 0.955 34 H 0.076 0.924 35 H 0.104 0.896 36 H 0.072 0.928 37 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 2.068 0.953 13.965 14.149 hybrid contribution 1.078 -0.279 -1.384 1.776 sum 3.146 0.674 12.580 12.985 Atomic orbital electron populations 1.21651 0.98781 0.98382 0.99391 1.18649 0.92676 0.94504 0.92023 0.98179 1.21663 1.30916 1.12345 0.92358 0.93177 1.25752 0.95421 0.95742 1.01906 1.70040 1.37894 1.24195 1.23707 0.85658 0.78901 0.78403 0.79311 1.20117 1.20928 1.19340 1.21513 0.98937 0.98261 0.94102 1.21156 1.00040 0.93774 0.94714 0.91681 1.21639 1.00909 0.98606 0.93969 1.21580 1.00978 0.94566 0.97773 1.22183 0.97179 0.95641 0.92340 1.61938 1.60453 1.03278 1.02548 1.22383 0.97340 0.89563 1.02985 1.22009 0.96548 0.95009 0.92159 0.95889 0.95166 0.93265 0.93171 0.94164 0.93195 0.92459 0.91323 0.89338 0.91646 0.95186 0.89228 0.95470 0.92357 0.89590 0.92810 0.95980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.26 8.73 71.98 0.63 -5.63 16 2 C 0.04 2.05 2.17 -11.54 -0.03 2.02 16 3 H 0.00 0.01 6.37 -2.39 -0.02 -0.01 16 4 C -0.53 -30.33 8.56 25.60 0.22 -30.11 16 5 H 0.05 2.79 7.74 -2.91 -0.02 2.77 16 6 C 0.01 0.56 5.30 84.66 0.45 1.01 16 7 N -0.92 -54.59 11.32 21.45 0.24 -54.35 16 8 Si 0.95 44.57 29.54 68.60 2.03 46.60 16 9 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 10 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 11 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 12 C -0.09 -3.78 4.09 30.60 0.13 -3.65 16 13 C -0.08 -2.75 2.21 -10.74 -0.02 -2.78 16 14 H 0.06 2.46 6.34 -2.39 -0.02 2.45 16 15 C -0.11 -3.15 5.29 30.68 0.16 -2.98 16 16 C -0.11 -2.54 6.09 30.65 0.19 -2.36 16 17 C 0.05 1.28 5.46 86.33 0.47 1.75 16 18 N -0.56 -16.48 4.91 -922.60 -4.53 -21.01 16 19 C 0.03 0.63 9.62 127.69 1.23 1.86 16 20 C 0.07 2.50 4.49 86.32 0.39 2.88 16 21 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 22 H 0.03 1.36 6.46 -2.39 -0.02 1.34 16 23 H 0.05 2.76 6.07 -2.39 -0.01 2.74 16 24 H 0.26 14.64 8.31 -92.70 -0.77 13.87 16 25 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 26 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 27 H 0.06 1.55 8.14 -2.39 -0.02 1.54 16 28 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 29 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.06 1.56 8.14 -2.38 -0.02 1.54 16 31 H 0.03 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.09 1.74 8.12 -2.39 -0.02 1.72 16 33 H 0.03 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.06 1.57 8.02 -2.39 -0.02 1.55 16 35 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.05 2.21 6.41 -2.38 -0.02 2.20 16 37 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 Total: -1.00 -61.38 282.52 2.55 -58.83 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: 1.00 Total: 7.92 kcal Atomic # 6 Polarization: -41.79 SS G_CDS: 3.81 Total: -37.98 kcal Atomic # 7 Polarization: -71.07 SS G_CDS: -4.29 Total: -75.36 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Total: -61.38 2.55 -58.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261025325.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.892 kcal (2) G-P(sol) polarization free energy of solvation -61.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds