Wall clock time and date at job start Mon Mar 30 2020 03:32:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08996 * 109.47455 * 2 1 4 4 C 1.50706 * 109.47307 * 120.00147 * 2 1 3 5 5 H 1.08001 * 119.99849 * 120.00007 * 4 2 1 6 6 C 1.37872 * 119.99738 * 299.99583 * 4 2 1 7 7 N 1.31512 * 119.99746 * 179.97438 * 6 4 2 8 8 Si 1.86797 * 120.00152 * 0.02562 * 6 4 2 9 9 H 1.48502 * 109.47344 * 89.99856 * 8 6 4 10 10 H 1.48497 * 109.47248 * 209.99706 * 8 6 4 11 11 H 1.48497 * 109.47094 * 329.99709 * 8 6 4 12 12 C 1.53001 * 109.47079 * 239.99807 * 2 1 3 13 13 C 1.53008 * 109.47034 * 65.65026 * 12 2 1 14 14 H 1.08996 * 109.50214 * 305.64175 * 13 12 2 15 15 C 1.53129 * 109.49826 * 65.71762 * 13 12 2 16 16 C 1.53121 * 109.15667 * 177.63695 * 15 13 12 17 17 C 1.53042 * 109.27811 * 302.34520 * 16 15 13 18 18 N 1.46846 * 109.52268 * 59.18137 * 17 16 15 19 19 C 1.46897 * 110.99967 * 174.16317 * 18 17 16 20 20 C 1.46848 * 111.19714 * 298.25592 * 18 17 16 21 21 H 1.09005 * 109.46885 * 294.28542 * 1 2 3 22 22 H 1.08996 * 109.47245 * 54.28222 * 1 2 3 23 23 H 1.09005 * 109.47653 * 174.28685 * 1 2 3 24 24 H 0.97005 * 120.00173 * 179.97438 * 7 6 4 25 25 H 1.09004 * 109.47487 * 305.65507 * 12 2 1 26 26 H 1.09000 * 109.47635 * 185.65044 * 12 2 1 27 27 H 1.08992 * 109.52176 * 57.73266 * 15 13 12 28 28 H 1.08997 * 109.57225 * 297.57029 * 15 13 12 29 29 H 1.08998 * 109.50322 * 182.40372 * 16 15 13 30 30 H 1.08997 * 109.53636 * 62.30499 * 16 15 13 31 31 H 1.09004 * 109.45931 * 299.16718 * 17 16 15 32 32 H 1.09001 * 109.46134 * 179.19520 * 17 16 15 33 33 H 1.08997 * 109.47253 * 56.04314 * 19 18 17 34 34 H 1.09003 * 109.47413 * 176.04313 * 19 18 17 35 35 H 1.09004 * 109.47279 * 296.04713 * 19 18 17 36 36 H 1.09000 * 109.46468 * 181.75878 * 20 18 17 37 37 H 1.08993 * 109.46386 * 301.72814 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 2.1373 -0.8596 3.5565 8 14 0.6249 1.2790 2.6541 9 1 -0.8028 0.8727 2.6998 10 1 0.9760 1.9951 3.9068 11 1 0.8471 2.1764 1.4920 12 6 2.0399 -0.7213 -1.2492 13 6 1.6491 0.0773 -2.4945 14 1 0.5733 0.2521 -2.4919 15 6 2.3853 1.4200 -2.4924 16 6 2.0345 2.1873 -3.7702 17 6 2.4102 1.3397 -4.9878 18 7 1.6795 0.0667 -4.9438 19 6 1.9091 -0.7146 -6.1665 20 6 2.0360 -0.7091 -3.7490 21 1 -0.3633 0.4227 0.9368 22 1 -0.3633 0.5999 -0.8343 23 1 -0.3634 -1.0226 -0.1023 24 1 1.9033 -0.5280 4.4375 25 1 1.5963 -1.7156 -1.3013 26 1 3.1252 -0.8098 -1.2002 27 1 3.4606 1.2458 -2.4558 28 1 2.0807 2.0021 -1.6227 29 1 2.5887 3.1256 -3.7950 30 1 0.9648 2.3959 -3.7881 31 1 3.4824 1.1437 -4.9770 32 1 2.1485 1.8773 -5.8993 33 1 2.9795 -0.8658 -6.3055 34 1 1.4140 -1.6816 -6.0781 35 1 1.5041 -0.1760 -7.0233 36 1 1.5026 -1.6596 -3.7606 37 1 3.1099 -0.8955 -3.7441 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261025336.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:46 Heat of formation + Delta-G solvation = -17.797086 kcal Electronic energy + Delta-G solvation = -14719.130155 eV Core-core repulsion = 12495.471400 eV Total energy + Delta-G solvation = -2223.658754 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.04070 -35.68122 -33.05757 -31.82814 -30.32046 -26.64336 -25.77324 -24.91376 -22.71753 -21.71890 -19.65168 -18.71684 -16.61533 -15.57791 -15.18794 -14.64138 -14.33189 -14.04337 -13.84793 -13.07370 -12.73265 -12.55199 -12.29056 -12.22250 -12.01726 -11.60064 -11.42533 -11.06957 -10.79375 -10.50331 -10.35347 -10.14996 -9.90915 -9.79064 -9.50622 -9.04755 -8.81502 -8.47601 -8.25264 -6.00671 -3.98624 3.32416 3.42406 3.45553 4.01730 4.47499 4.99998 5.03069 5.14523 5.28743 5.33147 5.45679 5.47092 5.61737 5.70389 5.78423 5.80489 5.98951 5.99966 6.10047 6.17111 6.30316 6.39915 6.45859 6.48210 6.59487 6.78297 6.85236 6.95051 7.05205 7.16765 7.19563 7.38761 7.65432 7.87338 8.60548 9.03879 9.62959 11.12930 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.052458 B = 0.007575 C = 0.007154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 533.632276 B = 3695.623370 C = 3913.124583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.008 3.992 3 H 0.028 0.972 4 C -0.511 4.511 5 H 0.071 0.929 6 C 0.066 3.934 7 N -0.906 5.906 8 Si 0.891 3.109 9 H -0.281 1.281 10 H -0.300 1.300 11 H -0.266 1.266 12 C -0.091 4.091 13 C -0.087 4.087 14 H 0.077 0.923 15 C -0.117 4.117 16 C -0.118 4.118 17 C 0.058 3.942 18 N -0.545 5.545 19 C 0.026 3.974 20 C 0.061 3.939 21 H 0.035 0.965 22 H 0.029 0.971 23 H 0.047 0.953 24 H 0.262 0.738 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.056 0.944 28 H 0.071 0.929 29 H 0.061 0.939 30 H 0.068 0.932 31 H 0.029 0.971 32 H 0.067 0.933 33 H 0.021 0.979 34 H 0.066 0.934 35 H 0.064 0.936 36 H 0.071 0.929 37 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.708 3.899 -16.457 16.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.011 4.011 3 H 0.046 0.954 4 C -0.549 4.549 5 H 0.089 0.911 6 C -0.135 4.135 7 N -0.545 5.545 8 Si 0.722 3.278 9 H -0.208 1.208 10 H -0.228 1.228 11 H -0.191 1.191 12 C -0.129 4.129 13 C -0.106 4.106 14 H 0.095 0.905 15 C -0.155 4.155 16 C -0.155 4.155 17 C -0.070 4.070 18 N -0.270 5.270 19 C -0.123 4.123 20 C -0.067 4.067 21 H 0.054 0.946 22 H 0.048 0.952 23 H 0.067 0.933 24 H 0.072 0.928 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.075 0.925 28 H 0.090 0.910 29 H 0.080 0.920 30 H 0.086 0.914 31 H 0.048 0.952 32 H 0.086 0.914 33 H 0.040 0.960 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.090 0.910 37 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -1.196 3.998 -16.249 16.777 hybrid contribution 0.259 0.515 0.215 0.615 sum -0.937 4.513 -16.034 16.684 Atomic orbital electron populations 1.22199 0.99693 1.00176 0.98365 1.19164 0.91477 0.96589 0.93841 0.95372 1.21115 1.31526 1.13320 0.88902 0.91080 1.25040 0.95833 0.96694 0.95915 1.69913 1.46146 1.40522 0.97870 0.86788 0.80494 0.83806 0.76672 1.20820 1.22827 1.19138 1.21495 1.00167 0.98171 0.93072 1.21325 1.00877 0.94765 0.93635 0.90483 1.21676 0.99983 0.96599 0.97204 1.21613 1.01915 0.97570 0.94442 1.22075 0.95327 0.90823 0.98802 1.61931 1.57725 1.04865 1.02451 1.22334 0.98935 0.98361 0.92633 1.22215 0.98257 0.96539 0.89644 0.94609 0.95189 0.93346 0.92835 0.92881 0.92938 0.92508 0.91034 0.91984 0.91358 0.95231 0.91422 0.96013 0.91520 0.91750 0.91012 0.95165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.25 8.32 37.15 0.31 -2.94 16 2 C 0.01 0.19 1.77 -91.77 -0.16 0.03 16 3 H 0.03 0.68 5.46 -51.93 -0.28 0.39 16 4 C -0.51 -14.51 9.14 -34.44 -0.31 -14.82 16 5 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 6 C 0.07 1.93 5.45 -17.82 -0.10 1.84 16 7 N -0.91 -28.23 13.96 55.43 0.77 -27.45 16 8 Si 0.89 22.57 24.41 -169.99 -4.15 18.42 16 9 H -0.28 -6.97 6.82 56.52 0.39 -6.58 16 10 H -0.30 -7.61 7.11 56.52 0.40 -7.21 16 11 H -0.27 -6.43 6.53 56.52 0.37 -6.06 16 12 C -0.09 -1.79 4.08 -26.73 -0.11 -1.90 16 13 C -0.09 -1.44 2.23 -90.53 -0.20 -1.64 16 14 H 0.08 1.33 6.47 -51.93 -0.34 1.00 16 15 C -0.12 -1.83 5.00 -26.60 -0.13 -1.97 16 16 C -0.12 -1.54 6.09 -26.65 -0.16 -1.70 16 17 C 0.06 0.71 5.46 -3.83 -0.02 0.69 16 18 N -0.55 -7.27 4.91 -242.96 -1.19 -8.47 16 19 C 0.03 0.28 9.62 60.06 0.58 0.85 16 20 C 0.06 0.89 4.75 -3.84 -0.02 0.87 16 21 H 0.04 0.84 3.21 -51.93 -0.17 0.67 16 22 H 0.03 0.57 6.74 -51.93 -0.35 0.22 16 23 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 24 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 25 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 26 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 27 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 28 H 0.07 1.22 6.60 -51.93 -0.34 0.88 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 31 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.07 0.73 8.12 -51.93 -0.42 0.31 16 33 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 34 H 0.07 0.67 8.02 -51.93 -0.42 0.26 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.07 1.02 8.04 -51.93 -0.42 0.60 16 37 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 276.04 15.07 4.16 4.16 Total: -1.00 -30.12 276.04 -7.31 -37.42 By element: Atomic # 1 Polarization: 3.18 SS G_CDS: -6.56 Total: -3.39 kcal Atomic # 6 Polarization: -20.36 SS G_CDS: -0.33 Total: -20.70 kcal Atomic # 7 Polarization: -35.50 SS G_CDS: -0.42 Total: -35.92 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -4.15 Total: 18.42 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -30.12 -7.31 -37.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261025336.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.627 kcal (2) G-P(sol) polarization free energy of solvation -30.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds