Wall clock time and date at job start Mon Mar 30 2020 03:32:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08996 * 109.47455 * 2 1 4 4 C 1.50706 * 109.47307 * 120.00147 * 2 1 3 5 5 H 1.08001 * 119.99849 * 120.00007 * 4 2 1 6 6 C 1.37872 * 119.99738 * 299.99583 * 4 2 1 7 7 N 1.31512 * 119.99746 * 179.97438 * 6 4 2 8 8 Si 1.86797 * 120.00152 * 0.02562 * 6 4 2 9 9 H 1.48502 * 109.47344 * 89.99856 * 8 6 4 10 10 H 1.48497 * 109.47248 * 209.99706 * 8 6 4 11 11 H 1.48497 * 109.47094 * 329.99709 * 8 6 4 12 12 C 1.53001 * 109.47079 * 239.99807 * 2 1 3 13 13 C 1.53008 * 109.47034 * 65.65026 * 12 2 1 14 14 H 1.08996 * 109.50214 * 305.64175 * 13 12 2 15 15 C 1.53129 * 109.49826 * 65.71762 * 13 12 2 16 16 C 1.53121 * 109.15667 * 177.63695 * 15 13 12 17 17 C 1.53042 * 109.27811 * 302.34520 * 16 15 13 18 18 N 1.46846 * 109.52268 * 59.18137 * 17 16 15 19 19 C 1.46897 * 110.99967 * 174.16317 * 18 17 16 20 20 C 1.46848 * 111.19714 * 298.25592 * 18 17 16 21 21 H 1.09005 * 109.46885 * 294.28542 * 1 2 3 22 22 H 1.08996 * 109.47245 * 54.28222 * 1 2 3 23 23 H 1.09005 * 109.47653 * 174.28685 * 1 2 3 24 24 H 0.97005 * 120.00173 * 179.97438 * 7 6 4 25 25 H 1.09004 * 109.47487 * 305.65507 * 12 2 1 26 26 H 1.09000 * 109.47635 * 185.65044 * 12 2 1 27 27 H 1.08992 * 109.52176 * 57.73266 * 15 13 12 28 28 H 1.08997 * 109.57225 * 297.57029 * 15 13 12 29 29 H 1.08998 * 109.50322 * 182.40372 * 16 15 13 30 30 H 1.08997 * 109.53636 * 62.30499 * 16 15 13 31 31 H 1.09004 * 109.45931 * 299.16718 * 17 16 15 32 32 H 1.09001 * 109.46134 * 179.19520 * 17 16 15 33 33 H 1.08997 * 109.47253 * 56.04314 * 19 18 17 34 34 H 1.09003 * 109.47413 * 176.04313 * 19 18 17 35 35 H 1.09004 * 109.47279 * 296.04713 * 19 18 17 36 36 H 1.09000 * 109.46468 * 181.75878 * 20 18 17 37 37 H 1.08993 * 109.46386 * 301.72814 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 2.1373 -0.8596 3.5565 8 14 0.6249 1.2790 2.6541 9 1 -0.8028 0.8727 2.6998 10 1 0.9760 1.9951 3.9068 11 1 0.8471 2.1764 1.4920 12 6 2.0399 -0.7213 -1.2492 13 6 1.6491 0.0773 -2.4945 14 1 0.5733 0.2521 -2.4919 15 6 2.3853 1.4200 -2.4924 16 6 2.0345 2.1873 -3.7702 17 6 2.4102 1.3397 -4.9878 18 7 1.6795 0.0667 -4.9438 19 6 1.9091 -0.7146 -6.1665 20 6 2.0360 -0.7091 -3.7490 21 1 -0.3633 0.4227 0.9368 22 1 -0.3633 0.5999 -0.8343 23 1 -0.3634 -1.0226 -0.1023 24 1 1.9033 -0.5280 4.4375 25 1 1.5963 -1.7156 -1.3013 26 1 3.1252 -0.8098 -1.2002 27 1 3.4606 1.2458 -2.4558 28 1 2.0807 2.0021 -1.6227 29 1 2.5887 3.1256 -3.7950 30 1 0.9648 2.3959 -3.7881 31 1 3.4824 1.1437 -4.9770 32 1 2.1485 1.8773 -5.8993 33 1 2.9795 -0.8658 -6.3055 34 1 1.4140 -1.6816 -6.0781 35 1 1.5041 -0.1760 -7.0233 36 1 1.5026 -1.6596 -3.7606 37 1 3.1099 -0.8955 -3.7441 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261025336.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:46 Heat of formation + Delta-G solvation = -37.527809 kcal Electronic energy + Delta-G solvation = -14719.985743 eV Core-core repulsion = 12495.471400 eV Total energy + Delta-G solvation = -2224.514343 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.20982 -37.27763 -34.67344 -33.41499 -31.84218 -27.66998 -27.32055 -26.88519 -23.79018 -23.12220 -21.01674 -20.25550 -18.74397 -16.94939 -16.56813 -15.99757 -15.54611 -15.40297 -15.19465 -14.61504 -14.51118 -14.08789 -13.73018 -13.60889 -13.12874 -12.98555 -12.76793 -12.59082 -12.28338 -12.06025 -11.80904 -11.72214 -11.53248 -11.40858 -11.05808 -10.77173 -10.74244 -10.66537 -9.24721 -8.27818 -6.30508 1.31630 1.36640 1.48140 2.34586 3.03099 3.08622 3.86604 3.97849 3.99799 4.20039 4.43260 4.45398 4.57212 4.58157 4.62462 4.66323 4.71352 4.73415 4.85772 4.91979 4.99861 5.03168 5.07879 5.11625 5.16751 5.22840 5.29500 5.43657 5.49825 5.67042 5.75784 5.83757 6.15713 6.21317 6.35667 6.77528 7.34934 8.89449 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.052458 B = 0.007575 C = 0.007154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 533.632276 B = 3695.623370 C = 3913.124583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.008 3.992 3 H 0.028 0.972 4 C -0.517 4.517 5 H 0.029 0.971 6 C 0.006 3.994 7 N -0.955 5.955 8 Si 0.954 3.046 9 H -0.269 1.269 10 H -0.301 1.301 11 H -0.245 1.245 12 C -0.083 4.083 13 C -0.078 4.078 14 H 0.075 0.925 15 C -0.119 4.119 16 C -0.112 4.112 17 C 0.057 3.943 18 N -0.556 5.556 19 C 0.025 3.975 20 C 0.067 3.933 21 H 0.024 0.976 22 H 0.062 0.938 23 H 0.048 0.952 24 H 0.264 0.736 25 H 0.048 0.952 26 H 0.039 0.961 27 H 0.051 0.949 28 H 0.056 0.944 29 H 0.079 0.921 30 H 0.067 0.933 31 H 0.029 0.971 32 H 0.089 0.911 33 H 0.025 0.975 34 H 0.070 0.930 35 H 0.080 0.920 36 H 0.074 0.926 37 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.846 5.533 -18.751 19.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.011 4.011 3 H 0.046 0.954 4 C -0.556 4.556 5 H 0.047 0.953 6 C -0.190 4.190 7 N -0.596 5.596 8 Si 0.781 3.219 9 H -0.195 1.195 10 H -0.230 1.230 11 H -0.168 1.168 12 C -0.122 4.122 13 C -0.097 4.097 14 H 0.093 0.907 15 C -0.156 4.156 16 C -0.150 4.150 17 C -0.071 4.071 18 N -0.280 5.280 19 C -0.123 4.123 20 C -0.061 4.061 21 H 0.042 0.958 22 H 0.081 0.919 23 H 0.067 0.933 24 H 0.073 0.927 25 H 0.067 0.933 26 H 0.058 0.942 27 H 0.070 0.930 28 H 0.074 0.926 29 H 0.098 0.902 30 H 0.086 0.914 31 H 0.047 0.953 32 H 0.107 0.893 33 H 0.044 0.956 34 H 0.089 0.911 35 H 0.099 0.901 36 H 0.092 0.908 37 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -2.334 5.630 -18.579 19.553 hybrid contribution 0.693 -0.085 0.911 1.148 sum -1.641 5.546 -17.668 18.590 Atomic orbital electron populations 1.22118 0.98021 1.00911 0.99075 1.19137 0.92794 0.96132 0.93047 0.95379 1.21492 1.30564 1.12220 0.91279 0.95263 1.25934 0.97442 1.00135 0.95469 1.70068 1.48208 1.42754 0.98571 0.85760 0.78896 0.80008 0.77193 1.19547 1.22954 1.16834 1.21357 0.99190 0.98186 0.93434 1.21176 1.00711 0.94984 0.92846 0.90650 1.21664 0.99528 0.96180 0.98252 1.21580 1.02139 0.98070 0.93189 1.22134 0.95232 0.90432 0.99288 1.61933 1.58055 1.05349 1.02670 1.22402 0.99403 0.98540 0.91937 1.22060 0.97982 0.96495 0.89600 0.95757 0.91882 0.93275 0.92729 0.93335 0.94194 0.93000 0.92559 0.90198 0.91391 0.95295 0.89284 0.95638 0.91139 0.90083 0.90783 0.95605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.07 8.32 71.98 0.60 -5.47 16 2 C 0.01 0.35 1.77 -11.54 -0.02 0.33 16 3 H 0.03 1.31 5.46 -2.39 -0.01 1.30 16 4 C -0.52 -30.13 9.14 25.60 0.23 -29.90 16 5 H 0.03 1.88 7.99 -2.91 -0.02 1.86 16 6 C 0.01 0.37 5.45 84.65 0.46 0.83 16 7 N -0.95 -61.24 13.96 21.44 0.30 -60.94 16 8 Si 0.95 46.21 24.41 68.60 1.67 47.89 16 9 H -0.27 -12.47 6.82 99.48 0.68 -11.79 16 10 H -0.30 -14.56 7.11 99.48 0.71 -13.85 16 11 H -0.24 -10.89 6.53 99.48 0.65 -10.24 16 12 C -0.08 -3.27 4.08 30.60 0.12 -3.15 16 13 C -0.08 -2.46 2.23 -10.74 -0.02 -2.48 16 14 H 0.08 2.41 6.47 -2.39 -0.02 2.39 16 15 C -0.12 -3.49 5.00 30.68 0.15 -3.34 16 16 C -0.11 -2.59 6.09 30.65 0.19 -2.40 16 17 C 0.06 1.21 5.46 86.33 0.47 1.68 16 18 N -0.56 -13.18 4.91 -922.59 -4.53 -17.71 16 19 C 0.02 0.46 9.62 127.69 1.23 1.69 16 20 C 0.07 1.81 4.75 86.32 0.41 2.22 16 21 H 0.02 1.07 3.21 -2.38 -0.01 1.06 16 22 H 0.06 2.23 6.74 -2.39 -0.02 2.21 16 23 H 0.05 2.02 8.14 -2.38 -0.02 2.00 16 24 H 0.26 15.86 8.31 -92.70 -0.77 15.09 16 25 H 0.05 1.91 8.14 -2.38 -0.02 1.89 16 26 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 27 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 28 H 0.06 1.81 6.60 -2.39 -0.02 1.80 16 29 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.03 0.63 8.14 -2.38 -0.02 0.61 16 32 H 0.09 1.55 8.12 -2.39 -0.02 1.53 16 33 H 0.03 0.45 8.14 -2.39 -0.02 0.43 16 34 H 0.07 1.24 8.02 -2.39 -0.02 1.22 16 35 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.07 1.97 8.04 -2.39 -0.02 1.95 16 37 H 0.03 0.72 8.14 -2.39 -0.02 0.70 16 Total: -1.00 -65.29 276.04 2.19 -63.11 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: 0.92 Total: 7.64 kcal Atomic # 6 Polarization: -43.80 SS G_CDS: 3.82 Total: -39.98 kcal Atomic # 7 Polarization: -74.42 SS G_CDS: -4.23 Total: -78.66 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 1.67 Total: 47.89 kcal Total: -65.29 2.19 -63.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261025336.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.578 kcal (2) G-P(sol) polarization free energy of solvation -65.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds