Wall clock time and date at job start Mon Mar 30 2020 03:32:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09006 * 109.47422 * 2 1 4 4 C 1.50709 * 109.46991 * 119.99517 * 2 1 3 5 5 H 1.07995 * 119.99790 * 120.00297 * 4 2 1 6 6 C 1.37878 * 119.99736 * 300.00174 * 4 2 1 7 7 N 1.31514 * 120.00071 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 119.99758 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47249 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.47142 * 120.00221 * 8 6 4 11 11 H 1.48504 * 109.47252 * 240.00262 * 8 6 4 12 12 C 1.52995 * 109.47639 * 239.99473 * 2 1 3 13 13 C 1.53006 * 109.46944 * 66.42449 * 12 2 1 14 14 H 1.08995 * 109.45868 * 173.31881 * 13 12 2 15 15 C 1.53033 * 109.46070 * 53.35036 * 13 12 2 16 16 C 1.53120 * 109.27801 * 180.80353 * 15 13 12 17 17 C 1.53121 * 109.15787 * 57.65454 * 16 15 13 18 18 C 1.53036 * 109.27879 * 302.34541 * 17 16 15 19 19 N 1.46843 * 109.45968 * 293.29814 * 13 12 2 20 20 C 1.46897 * 111.00119 * 305.85184 * 19 13 12 21 21 H 1.08998 * 109.47157 * 174.41837 * 1 2 3 22 22 H 1.09001 * 109.47655 * 294.42507 * 1 2 3 23 23 H 1.09003 * 109.46714 * 54.42575 * 1 2 3 24 24 H 0.97001 * 119.99776 * 179.97438 * 7 6 4 25 25 H 1.08996 * 109.47171 * 306.42787 * 12 2 1 26 26 H 1.08998 * 109.47407 * 186.42353 * 12 2 1 27 27 H 1.08999 * 109.50739 * 300.74737 * 15 13 12 28 28 H 1.09000 * 109.50580 * 60.86724 * 15 13 12 29 29 H 1.09001 * 109.52301 * 297.75375 * 16 15 13 30 30 H 1.09005 * 109.52473 * 177.55796 * 16 15 13 31 31 H 1.09005 * 109.50237 * 182.40162 * 17 16 15 32 32 H 1.08996 * 109.53589 * 62.30965 * 17 16 15 33 33 H 1.09000 * 109.46058 * 299.16461 * 18 17 16 34 34 H 1.09004 * 109.45959 * 179.19848 * 18 17 16 35 35 H 1.08999 * 109.46924 * 65.03015 * 20 19 13 36 36 H 1.09002 * 109.46995 * 185.02408 * 20 19 13 37 37 H 1.08997 * 109.47622 * 305.02620 * 20 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6532 -1.5884 1.1316 6 6 1.6991 -0.2392 2.4828 7 7 0.9426 0.8298 2.6033 8 14 2.3211 -1.1200 4.0081 9 1 3.1462 -2.2867 3.6041 10 1 3.1463 -0.1870 4.8166 11 1 1.1658 -1.5864 4.8162 12 6 2.0401 -0.7213 -1.2491 13 6 1.6661 0.0870 -2.4932 14 1 2.1299 -0.3625 -3.3712 15 6 2.1628 1.5258 -2.3347 16 6 1.7690 2.3359 -3.5730 17 6 0.2488 2.2794 -3.7478 18 6 -0.1924 0.8188 -3.8653 19 7 0.2068 0.0868 -2.6564 20 6 -0.3209 -1.2840 -2.6728 21 1 -0.3633 -1.0228 -0.1000 22 1 -0.3634 0.4249 0.9357 23 1 -0.3633 0.5979 -0.8359 24 1 0.7079 1.1611 3.4843 25 1 1.5859 -1.7104 -1.3084 26 1 3.1240 -0.8219 -1.1934 27 1 1.7102 1.9716 -1.4491 28 1 3.2477 1.5267 -2.2293 29 1 2.2528 1.9134 -4.4537 30 1 2.0828 3.3719 -3.4455 31 1 -0.0338 2.8189 -4.6518 32 1 -0.2345 2.7373 -2.8848 33 1 0.2801 0.3657 -4.7368 34 1 -1.2759 0.7745 -3.9756 35 1 -0.1529 -1.7496 -1.7016 36 1 -1.3900 -1.2593 -2.8837 37 1 0.1885 -1.8604 -3.4450 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261232538.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:31 Heat of formation + Delta-G solvation = -5.118279 kcal Electronic energy + Delta-G solvation = -15226.987498 eV Core-core repulsion = 13003.878538 eV Total energy + Delta-G solvation = -2223.108960 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.13312 -34.64332 -33.10693 -31.87758 -29.26749 -26.72731 -25.13591 -24.81165 -22.54178 -21.32140 -19.77537 -18.24058 -16.11910 -15.31758 -14.96561 -14.44547 -14.10676 -13.94912 -13.52395 -12.63328 -12.39855 -12.27720 -11.85455 -11.64750 -11.39253 -11.10639 -10.92138 -10.83648 -10.56036 -10.45742 -10.31898 -10.01744 -9.84642 -9.62341 -9.25124 -8.95355 -8.52242 -8.08178 -7.42180 -5.80158 -3.87027 3.36704 3.44609 3.48314 4.40245 4.55535 5.15525 5.21941 5.30471 5.47940 5.56914 5.71260 5.79508 5.85518 5.92251 5.96878 6.05667 6.17389 6.25664 6.37410 6.44012 6.51377 6.57379 6.72267 6.85263 6.93045 7.20445 7.41505 7.62255 7.68529 7.82127 7.86563 7.94772 8.26925 8.53342 8.70819 9.18809 9.76361 11.23414 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.046762 B = 0.008675 C = 0.008331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.627675 B = 3226.758062 C = 3360.176237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.050 3.950 3 H 0.028 0.972 4 C -0.512 4.512 5 H 0.048 0.952 6 C 0.060 3.940 7 N -0.888 5.888 8 Si 0.883 3.117 9 H -0.275 1.275 10 H -0.286 1.286 11 H -0.286 1.286 12 C -0.108 4.108 13 C 0.091 3.909 14 H 0.020 0.980 15 C -0.115 4.115 16 C -0.120 4.120 17 C -0.115 4.115 18 C 0.053 3.947 19 N -0.515 5.515 20 C 0.020 3.980 21 H 0.010 0.990 22 H 0.064 0.936 23 H 0.056 0.944 24 H 0.255 0.745 25 H 0.049 0.951 26 H 0.047 0.953 27 H 0.089 0.911 28 H 0.060 0.940 29 H 0.049 0.951 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.072 0.928 33 H 0.021 0.979 34 H 0.067 0.933 35 H 0.089 0.911 36 H 0.057 0.943 37 H 0.012 0.988 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.145 0.765 -11.845 11.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.032 3.968 3 H 0.046 0.954 4 C -0.550 4.550 5 H 0.067 0.933 6 C -0.140 4.140 7 N -0.527 5.527 8 Si 0.711 3.289 9 H -0.200 1.200 10 H -0.212 1.212 11 H -0.212 1.212 12 C -0.145 4.145 13 C -0.016 4.016 14 H 0.038 0.962 15 C -0.153 4.153 16 C -0.158 4.158 17 C -0.153 4.153 18 C -0.075 4.075 19 N -0.240 5.240 20 C -0.128 4.128 21 H 0.029 0.971 22 H 0.083 0.917 23 H 0.075 0.925 24 H 0.065 0.935 25 H 0.067 0.933 26 H 0.066 0.934 27 H 0.107 0.893 28 H 0.078 0.922 29 H 0.068 0.932 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.091 0.909 33 H 0.039 0.961 34 H 0.085 0.915 35 H 0.107 0.893 36 H 0.076 0.924 37 H 0.031 0.969 Dipole moment (debyes) X Y Z Total from point charges -1.418 1.112 -11.311 11.454 hybrid contribution 0.692 -1.002 0.221 1.238 sum -0.726 0.110 -11.090 11.114 Atomic orbital electron populations 1.22094 0.98148 0.98038 1.01873 1.18617 0.93502 0.95288 0.89401 0.95405 1.21383 1.30345 1.11999 0.91280 0.93323 1.24931 0.95360 0.95089 0.98654 1.69932 1.37053 1.23110 1.22630 0.86692 0.78579 0.79767 0.83837 1.20028 1.21248 1.21239 1.21851 0.99235 0.98214 0.95228 1.21699 0.86282 0.96331 0.97335 0.96246 1.21731 1.00150 0.94801 0.98616 1.21601 0.95810 0.99971 0.98389 1.21558 0.96323 0.95900 1.01524 1.22098 0.99719 0.94604 0.91084 1.62183 1.11883 1.14606 1.35295 1.22558 0.98771 0.89361 1.02126 0.97136 0.91706 0.92535 0.93457 0.93254 0.93423 0.89279 0.92153 0.93203 0.92331 0.92492 0.90887 0.96090 0.91465 0.89291 0.92429 0.96940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.56 7.54 37.15 0.28 -3.28 16 2 C 0.05 1.26 1.96 -91.77 -0.18 1.08 16 3 H 0.03 0.76 5.94 -51.93 -0.31 0.45 16 4 C -0.51 -14.43 8.56 -34.44 -0.29 -14.72 16 5 H 0.05 1.37 7.74 -52.49 -0.41 0.96 16 6 C 0.06 1.71 5.29 -17.82 -0.09 1.62 16 7 N -0.89 -26.19 11.29 55.43 0.63 -25.56 16 8 Si 0.88 21.88 29.54 -169.99 -5.02 16.86 16 9 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 10 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 11 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 12 C -0.11 -2.27 4.42 -26.73 -0.12 -2.39 16 13 C 0.09 1.65 2.12 -67.72 -0.14 1.50 16 14 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 15 C -0.12 -2.00 4.87 -26.65 -0.13 -2.13 16 16 C -0.12 -1.70 6.00 -26.61 -0.16 -1.86 16 17 C -0.12 -1.58 6.09 -26.65 -0.16 -1.74 16 18 C 0.05 0.77 5.46 -3.83 -0.02 0.74 16 19 N -0.52 -8.84 1.87 -234.93 -0.44 -9.28 16 20 C 0.02 0.32 8.23 60.06 0.49 0.81 16 21 H 0.01 0.24 6.30 -51.93 -0.33 -0.09 16 22 H 0.06 1.82 5.94 -51.93 -0.31 1.51 16 23 H 0.06 1.30 5.55 -51.93 -0.29 1.01 16 24 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 25 H 0.05 1.03 6.05 -51.93 -0.31 0.72 16 26 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.09 1.79 6.14 -51.93 -0.32 1.47 16 28 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.07 0.89 8.02 -51.93 -0.42 0.48 16 35 H 0.09 1.61 4.22 -51.93 -0.22 1.40 16 36 H 0.06 0.83 8.00 -51.93 -0.42 0.41 16 37 H 0.01 0.18 8.13 -51.93 -0.42 -0.24 16 LS Contribution 270.04 15.07 4.07 4.07 Total: -1.00 -29.00 270.04 -7.56 -36.55 By element: Atomic # 1 Polarization: 3.98 SS G_CDS: -6.26 Total: -2.28 kcal Atomic # 6 Polarization: -19.83 SS G_CDS: -0.53 Total: -20.36 kcal Atomic # 7 Polarization: -35.03 SS G_CDS: 0.19 Total: -34.84 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -29.00 -7.56 -36.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261232538.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.436 kcal (2) G-P(sol) polarization free energy of solvation -28.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds