Wall clock time and date at job start Mon Mar 30 2020 03:32:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09006 * 109.47422 * 2 1 4 4 C 1.50709 * 109.46991 * 119.99517 * 2 1 3 5 5 H 1.07995 * 119.99790 * 120.00297 * 4 2 1 6 6 C 1.37878 * 119.99736 * 300.00174 * 4 2 1 7 7 N 1.31514 * 120.00071 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 119.99758 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47249 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.47142 * 120.00221 * 8 6 4 11 11 H 1.48504 * 109.47252 * 240.00262 * 8 6 4 12 12 C 1.52995 * 109.47639 * 239.99473 * 2 1 3 13 13 C 1.53006 * 109.46944 * 66.42449 * 12 2 1 14 14 H 1.08995 * 109.45868 * 173.31881 * 13 12 2 15 15 C 1.53033 * 109.46070 * 53.35036 * 13 12 2 16 16 C 1.53120 * 109.27801 * 180.80353 * 15 13 12 17 17 C 1.53121 * 109.15787 * 57.65454 * 16 15 13 18 18 C 1.53036 * 109.27879 * 302.34541 * 17 16 15 19 19 N 1.46843 * 109.45968 * 293.29814 * 13 12 2 20 20 C 1.46897 * 111.00119 * 305.85184 * 19 13 12 21 21 H 1.08998 * 109.47157 * 174.41837 * 1 2 3 22 22 H 1.09001 * 109.47655 * 294.42507 * 1 2 3 23 23 H 1.09003 * 109.46714 * 54.42575 * 1 2 3 24 24 H 0.97001 * 119.99776 * 179.97438 * 7 6 4 25 25 H 1.08996 * 109.47171 * 306.42787 * 12 2 1 26 26 H 1.08998 * 109.47407 * 186.42353 * 12 2 1 27 27 H 1.08999 * 109.50739 * 300.74737 * 15 13 12 28 28 H 1.09000 * 109.50580 * 60.86724 * 15 13 12 29 29 H 1.09001 * 109.52301 * 297.75375 * 16 15 13 30 30 H 1.09005 * 109.52473 * 177.55796 * 16 15 13 31 31 H 1.09005 * 109.50237 * 182.40162 * 17 16 15 32 32 H 1.08996 * 109.53589 * 62.30965 * 17 16 15 33 33 H 1.09000 * 109.46058 * 299.16461 * 18 17 16 34 34 H 1.09004 * 109.45959 * 179.19848 * 18 17 16 35 35 H 1.08999 * 109.46924 * 65.03015 * 20 19 13 36 36 H 1.09002 * 109.46995 * 185.02408 * 20 19 13 37 37 H 1.08997 * 109.47622 * 305.02620 * 20 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6532 -1.5884 1.1316 6 6 1.6991 -0.2392 2.4828 7 7 0.9426 0.8298 2.6033 8 14 2.3211 -1.1200 4.0081 9 1 3.1462 -2.2867 3.6041 10 1 3.1463 -0.1870 4.8166 11 1 1.1658 -1.5864 4.8162 12 6 2.0401 -0.7213 -1.2491 13 6 1.6661 0.0870 -2.4932 14 1 2.1299 -0.3625 -3.3712 15 6 2.1628 1.5258 -2.3347 16 6 1.7690 2.3359 -3.5730 17 6 0.2488 2.2794 -3.7478 18 6 -0.1924 0.8188 -3.8653 19 7 0.2068 0.0868 -2.6564 20 6 -0.3209 -1.2840 -2.6728 21 1 -0.3633 -1.0228 -0.1000 22 1 -0.3634 0.4249 0.9357 23 1 -0.3633 0.5979 -0.8359 24 1 0.7079 1.1611 3.4843 25 1 1.5859 -1.7104 -1.3084 26 1 3.1240 -0.8219 -1.1934 27 1 1.7102 1.9716 -1.4491 28 1 3.2477 1.5267 -2.2293 29 1 2.2528 1.9134 -4.4537 30 1 2.0828 3.3719 -3.4455 31 1 -0.0338 2.8189 -4.6518 32 1 -0.2345 2.7373 -2.8848 33 1 0.2801 0.3657 -4.7368 34 1 -1.2759 0.7745 -3.9756 35 1 -0.1529 -1.7496 -1.7016 36 1 -1.3900 -1.2593 -2.8837 37 1 0.1885 -1.8604 -3.4450 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261232538.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:31 Heat of formation + Delta-G solvation = -20.572844 kcal Electronic energy + Delta-G solvation = -15227.657658 eV Core-core repulsion = 13003.878538 eV Total energy + Delta-G solvation = -2223.779120 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.50983 -36.43997 -34.44243 -33.69503 -30.97022 -28.11372 -26.95117 -26.64031 -23.84456 -22.87498 -21.21941 -19.85452 -18.23398 -16.78041 -16.40656 -16.23688 -15.57082 -15.23372 -14.96231 -14.26298 -13.92614 -13.81472 -13.44074 -13.24087 -12.87749 -12.75300 -12.61895 -12.43983 -12.37770 -12.12643 -11.85951 -11.66834 -11.28742 -11.22218 -10.96325 -10.84275 -10.51509 -10.18398 -8.81858 -7.97567 -6.13146 1.39317 1.40919 1.51958 2.46721 3.13755 3.26080 3.96337 4.03110 4.08929 4.27737 4.44994 4.57567 4.62030 4.66718 4.72311 4.82684 4.91663 4.99418 5.01150 5.11716 5.14768 5.20757 5.30560 5.35029 5.37843 5.46306 5.61897 5.66742 5.79929 5.89158 6.19215 6.35179 6.37093 6.50587 6.55628 7.03593 7.53840 9.03654 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.046762 B = 0.008675 C = 0.008331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.627675 B = 3226.758062 C = 3360.176237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.051 3.949 3 H 0.001 0.999 4 C -0.534 4.534 5 H 0.044 0.956 6 C 0.010 3.990 7 N -0.915 5.915 8 Si 0.947 3.053 9 H -0.269 1.269 10 H -0.281 1.281 11 H -0.282 1.282 12 C -0.100 4.100 13 C 0.099 3.901 14 H 0.036 0.964 15 C -0.115 4.115 16 C -0.114 4.114 17 C -0.114 4.114 18 C 0.053 3.947 19 N -0.538 5.538 20 C 0.023 3.977 21 H 0.011 0.989 22 H 0.027 0.973 23 H 0.073 0.927 24 H 0.256 0.744 25 H 0.049 0.951 26 H 0.042 0.958 27 H 0.052 0.948 28 H 0.058 0.942 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.087 0.913 32 H 0.053 0.947 33 H 0.035 0.965 34 H 0.080 0.920 35 H 0.062 0.938 36 H 0.074 0.926 37 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.144 0.443 -13.414 13.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.033 3.967 3 H 0.019 0.981 4 C -0.572 4.572 5 H 0.062 0.938 6 C -0.188 4.188 7 N -0.555 5.555 8 Si 0.773 3.227 9 H -0.194 1.194 10 H -0.207 1.207 11 H -0.208 1.208 12 C -0.138 4.138 13 C -0.010 4.010 14 H 0.054 0.946 15 C -0.153 4.153 16 C -0.151 4.151 17 C -0.152 4.152 18 C -0.074 4.074 19 N -0.263 5.263 20 C -0.125 4.125 21 H 0.030 0.970 22 H 0.046 0.954 23 H 0.092 0.908 24 H 0.066 0.934 25 H 0.068 0.932 26 H 0.061 0.939 27 H 0.071 0.929 28 H 0.077 0.923 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.105 0.895 32 H 0.072 0.928 33 H 0.053 0.947 34 H 0.099 0.901 35 H 0.080 0.920 36 H 0.093 0.907 37 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -1.417 0.785 -12.891 12.993 hybrid contribution 0.686 -0.892 0.695 1.323 sum -0.731 -0.108 -12.196 12.219 Atomic orbital electron populations 1.21907 0.97846 0.98023 1.00496 1.18533 0.93645 0.93982 0.90521 0.98066 1.21788 1.30446 1.12099 0.92864 0.93799 1.25699 0.95594 0.95846 1.01674 1.70079 1.37902 1.24298 1.23264 0.85685 0.78127 0.78788 0.80105 1.19362 1.20716 1.20789 1.21689 0.98696 0.98293 0.95112 1.21536 0.87367 0.96045 0.96008 0.94576 1.21666 0.99791 0.94880 0.98918 1.21564 0.96425 1.00035 0.97121 1.21574 0.95640 0.95795 1.02148 1.22181 1.00677 0.94453 0.90129 1.62042 1.11127 1.15501 1.37627 1.22485 1.00031 0.88919 1.01075 0.96986 0.95375 0.90828 0.93450 0.93236 0.93944 0.92903 0.92288 0.91422 0.91310 0.89453 0.92820 0.94652 0.90135 0.91956 0.90684 0.95492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.32 7.54 71.98 0.54 -5.78 16 2 C 0.05 2.66 1.96 -11.54 -0.02 2.63 16 3 H 0.00 0.08 5.94 -2.38 -0.01 0.06 16 4 C -0.53 -30.69 8.56 25.60 0.22 -30.47 16 5 H 0.04 2.50 7.74 -2.91 -0.02 2.47 16 6 C 0.01 0.56 5.29 84.65 0.45 1.01 16 7 N -0.92 -55.27 11.29 21.45 0.24 -55.02 16 8 Si 0.95 45.36 29.54 68.60 2.03 47.39 16 9 H -0.27 -12.51 7.11 99.48 0.71 -11.81 16 10 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 11 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 12 C -0.10 -4.24 4.42 30.59 0.14 -4.10 16 13 C 0.10 3.43 2.12 44.94 0.10 3.52 16 14 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 15 C -0.11 -3.91 4.87 30.65 0.15 -3.76 16 16 C -0.11 -2.95 6.00 30.67 0.18 -2.76 16 17 C -0.11 -2.80 6.09 30.65 0.19 -2.61 16 18 C 0.05 1.36 5.46 86.32 0.47 1.83 16 19 N -0.54 -17.55 1.87 -897.19 -1.68 -19.22 16 20 C 0.02 0.69 8.23 127.69 1.05 1.74 16 21 H 0.01 0.55 6.30 -2.39 -0.02 0.54 16 22 H 0.03 1.60 5.94 -2.39 -0.01 1.59 16 23 H 0.07 3.42 5.55 -2.39 -0.01 3.41 16 24 H 0.26 14.72 8.31 -92.71 -0.77 13.95 16 25 H 0.05 2.07 6.05 -2.39 -0.01 2.05 16 26 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 27 H 0.05 2.18 6.14 -2.39 -0.01 2.17 16 28 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 29 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.07 1.64 8.14 -2.38 -0.02 1.62 16 31 H 0.09 1.65 8.14 -2.38 -0.02 1.63 16 32 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.08 1.86 8.02 -2.38 -0.02 1.84 16 35 H 0.06 2.22 4.22 -2.39 -0.01 2.21 16 36 H 0.07 1.98 8.00 -2.39 -0.02 1.96 16 37 H 0.03 0.73 8.13 -2.39 -0.02 0.71 16 Total: -1.00 -62.60 270.04 5.07 -57.53 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: 1.02 Total: 8.08 kcal Atomic # 6 Polarization: -42.21 SS G_CDS: 3.46 Total: -38.75 kcal Atomic # 7 Polarization: -72.81 SS G_CDS: -1.43 Total: -74.25 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.39 kcal Total: -62.60 5.07 -57.53 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261232538.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.954 kcal (2) G-P(sol) polarization free energy of solvation -62.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds