Wall clock time and date at job start Mon Mar 30 2020 02:45:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08993 * 109.46926 * 2 1 4 4 C 1.50704 * 109.46753 * 239.99796 * 2 1 3 5 5 H 1.07999 * 119.99741 * 239.99491 * 4 2 1 6 6 C 1.37877 * 119.99914 * 60.00462 * 4 2 1 7 7 N 1.31512 * 120.00037 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99839 * 179.97438 * 6 4 2 9 9 H 1.48493 * 109.47389 * 59.99322 * 8 6 4 10 10 H 1.48503 * 109.47264 * 179.97438 * 8 6 4 11 11 H 1.48504 * 109.46680 * 299.99420 * 8 6 4 12 12 N 1.46898 * 109.47143 * 119.99993 * 2 1 3 13 13 C 1.46902 * 110.99704 * 275.00103 * 12 2 1 14 14 C 1.53000 * 109.46770 * 180.02562 * 13 12 2 15 15 H 1.08997 * 110.02243 * 305.05826 * 14 13 12 16 16 C 1.54266 * 110.03222 * 66.45496 * 14 13 12 17 17 C 1.54897 * 104.19585 * 142.94152 * 16 14 13 18 18 C 1.54882 * 102.74839 * 322.05457 * 17 16 14 19 19 C 1.53876 * 110.07038 * 183.63992 * 14 13 12 20 20 H 1.09004 * 110.02883 * 121.36355 * 19 14 13 21 21 C 1.52996 * 110.03269 * 359.97438 * 19 14 13 22 22 H 1.08998 * 109.47116 * 300.00068 * 1 2 3 23 23 H 1.08996 * 109.47435 * 60.00605 * 1 2 3 24 24 H 1.09007 * 109.46781 * 180.02562 * 1 2 3 25 25 H 0.97006 * 119.99639 * 180.02562 * 7 6 4 26 26 H 1.00901 * 111.00146 * 151.04667 * 12 2 1 27 27 H 1.08999 * 109.47246 * 60.00117 * 13 12 2 28 28 H 1.09001 * 109.46924 * 299.99913 * 13 12 2 29 29 H 1.08996 * 110.48947 * 24.26106 * 16 14 13 30 30 H 1.09000 * 110.48399 * 261.61689 * 16 14 13 31 31 H 1.08994 * 110.75328 * 80.37290 * 17 16 14 32 32 H 1.09004 * 110.75215 * 203.73998 * 17 16 14 33 33 H 1.08997 * 110.48961 * 156.62169 * 18 17 16 34 34 H 1.09002 * 110.48969 * 279.26637 * 18 17 16 35 35 H 1.09000 * 109.47347 * 59.99639 * 21 19 14 36 36 H 1.09003 * 109.46978 * 179.97438 * 21 19 14 37 37 H 1.09000 * 109.47122 * 299.99558 * 21 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3224 -1.1197 -4.0080 9 1 1.8280 -2.5199 -4.0081 10 1 1.8268 -0.4200 -5.2205 11 1 3.8074 -1.1190 -4.0077 12 7 2.0197 -0.6925 1.1994 13 6 2.0824 0.2227 2.3468 14 6 2.5962 -0.5328 3.5741 15 1 1.9775 -1.4112 3.7577 16 6 4.0639 -0.9560 3.3580 17 6 4.7165 -0.7897 4.7529 18 6 4.0407 0.4938 5.2956 19 6 2.5815 0.3891 4.8061 20 1 1.9549 -0.0416 5.5872 21 6 2.0582 1.7735 4.4185 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5137 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 0.7082 1.1608 -3.4845 26 1 2.9173 -1.1205 1.0287 27 1 1.0870 0.6164 2.5525 28 1 2.7588 1.0463 2.1181 29 1 4.5462 -0.3027 2.6309 30 1 4.1174 -1.9951 3.0332 31 1 4.4896 -1.6447 5.3898 32 1 5.7936 -0.6500 4.6612 33 1 4.0772 0.5129 6.3848 34 1 4.5192 1.3813 4.8814 35 1 1.0450 1.6825 4.0269 36 1 2.0512 2.4184 5.2972 37 1 2.7051 2.2059 3.6552 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300244648.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:42 Heat of formation + Delta-G solvation = -27.995433 kcal Electronic energy + Delta-G solvation = -14526.665792 eV Core-core repulsion = 12302.564804 eV Total energy + Delta-G solvation = -2224.100988 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.88153 -35.44571 -32.53981 -31.22479 -29.83352 -27.15157 -25.21916 -24.81739 -23.11507 -20.59701 -19.65625 -18.30090 -16.42210 -15.91947 -14.90924 -14.64683 -14.18302 -13.77717 -13.45895 -12.81702 -12.74475 -12.27286 -11.94106 -11.70889 -11.35851 -10.96197 -10.88056 -10.73219 -10.62597 -10.54567 -10.45535 -10.33340 -10.16700 -10.07901 -9.87069 -9.62834 -8.77481 -8.43459 -7.15639 -5.99299 -4.05625 3.32756 3.36988 3.39929 4.42525 4.74680 4.76932 4.90019 5.31190 5.40011 5.45530 5.56163 5.68092 5.70158 5.80691 5.84985 5.91606 5.97106 6.06346 6.16412 6.26918 6.28775 6.42680 6.44415 6.54768 6.68482 6.80919 6.94939 7.19302 7.29967 7.57463 7.81920 7.95856 8.32696 8.47459 8.75776 9.06334 9.60195 11.07026 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.046807 B = 0.006905 C = 0.006335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.058918 B = 4054.234016 C = 4419.017322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.211 3.789 3 H -0.001 1.001 4 C -0.518 4.518 5 H 0.058 0.942 6 C 0.061 3.939 7 N -0.891 5.891 8 Si 0.896 3.104 9 H -0.276 1.276 10 H -0.287 1.287 11 H -0.278 1.278 12 N -0.691 5.691 13 C 0.067 3.933 14 C -0.086 4.086 15 H 0.075 0.925 16 C -0.119 4.119 17 C -0.125 4.125 18 C -0.120 4.120 19 C -0.091 4.091 20 H 0.066 0.934 21 C -0.148 4.148 22 H 0.003 0.997 23 H 0.079 0.921 24 H 0.030 0.970 25 H 0.261 0.739 26 H 0.328 0.672 27 H 0.064 0.936 28 H 0.019 0.981 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.060 0.940 33 H 0.058 0.942 34 H 0.064 0.936 35 H 0.059 0.941 36 H 0.045 0.955 37 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.580 -0.291 12.989 13.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.104 3.896 3 H 0.016 0.984 4 C -0.557 4.557 5 H 0.076 0.924 6 C -0.140 4.140 7 N -0.530 5.530 8 Si 0.724 3.276 9 H -0.202 1.202 10 H -0.213 1.213 11 H -0.204 1.204 12 N -0.323 5.323 13 C -0.063 4.063 14 C -0.105 4.105 15 H 0.093 0.907 16 C -0.157 4.157 17 C -0.162 4.162 18 C -0.157 4.157 19 C -0.110 4.110 20 H 0.085 0.915 21 C -0.205 4.205 22 H 0.022 0.978 23 H 0.098 0.902 24 H 0.050 0.950 25 H 0.071 0.929 26 H 0.145 0.855 27 H 0.083 0.917 28 H 0.037 0.963 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.064 0.936 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.858 -0.406 12.995 13.561 hybrid contribution 1.013 0.132 -1.127 1.521 sum 4.871 -0.274 11.867 12.831 Atomic orbital electron populations 1.21706 0.98026 0.99239 0.99220 1.19074 0.92538 0.92249 0.85773 0.98372 1.21254 1.31390 1.12442 0.90569 0.92351 1.24924 0.95090 0.95010 0.99014 1.69894 1.36664 1.22934 1.23484 0.86592 0.79052 0.79804 0.82128 1.20199 1.21302 1.20363 1.60735 1.31973 1.33400 1.06144 1.22131 0.99435 0.93791 0.90901 1.21831 0.96219 0.98209 0.94264 0.90682 1.22423 0.95407 1.01396 0.96481 1.22482 0.99114 0.97600 0.97054 1.22447 0.95549 0.98123 0.99599 1.21748 0.96035 0.95990 0.97227 0.91534 1.21971 1.01685 0.96121 1.00744 0.97806 0.90210 0.95045 0.92922 0.85457 0.91747 0.96301 0.91773 0.91601 0.91869 0.92099 0.92326 0.91753 0.92155 0.93585 0.92245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.18 9.19 37.16 0.34 -2.84 16 2 C 0.21 5.52 2.60 -68.86 -0.18 5.34 16 3 H 0.00 -0.04 7.80 -51.93 -0.40 -0.44 16 4 C -0.52 -14.54 8.59 -34.44 -0.30 -14.84 16 5 H 0.06 1.61 7.62 -52.49 -0.40 1.21 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 7 N -0.89 -25.92 11.32 55.43 0.63 -25.29 16 8 Si 0.90 21.56 29.54 -169.99 -5.02 16.54 16 9 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 10 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 12 N -0.69 -15.23 6.30 -107.95 -0.68 -15.91 16 13 C 0.07 1.24 3.65 -3.82 -0.01 1.23 16 14 C -0.09 -1.30 3.16 -89.50 -0.28 -1.58 16 15 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 16 C -0.12 -1.66 5.50 -25.07 -0.14 -1.80 16 17 C -0.12 -1.44 6.91 -24.74 -0.17 -1.61 16 18 C -0.12 -1.36 6.36 -25.07 -0.16 -1.52 16 19 C -0.09 -1.16 3.50 -89.50 -0.31 -1.47 16 20 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 21 C -0.15 -1.91 7.89 37.16 0.29 -1.61 16 22 H 0.00 0.07 7.45 -51.93 -0.39 -0.32 16 23 H 0.08 2.21 6.07 -51.93 -0.32 1.90 16 24 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.26 7.22 8.31 -40.82 -0.34 6.89 16 26 H 0.33 7.07 7.40 -39.29 -0.29 6.78 16 27 H 0.06 1.23 5.81 -51.93 -0.30 0.93 16 28 H 0.02 0.36 6.77 -51.93 -0.35 0.01 16 29 H 0.06 0.96 7.78 -51.93 -0.40 0.56 16 30 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.06 0.74 7.84 -51.93 -0.41 0.33 16 35 H 0.06 0.82 6.65 -51.93 -0.35 0.47 16 36 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.06 0.82 6.82 -51.93 -0.35 0.46 16 LS Contribution 282.58 15.07 4.26 4.26 Total: -1.00 -28.48 282.58 -8.31 -36.79 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: -6.48 Total: 2.69 kcal Atomic # 6 Polarization: -18.07 SS G_CDS: -1.01 Total: -19.08 kcal Atomic # 7 Polarization: -41.14 SS G_CDS: -0.05 Total: -41.20 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -28.48 -8.31 -36.79 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300244648.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.795 kcal (2) G-P(sol) polarization free energy of solvation -28.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds