Wall clock time and date at job start Mon Mar 30 2020 02:57:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.47112 * 2 1 4 4 C 1.50699 * 109.46951 * 239.99666 * 2 1 3 5 5 H 1.07999 * 119.99742 * 245.46372 * 4 2 1 6 6 C 1.37875 * 120.00085 * 65.46495 * 4 2 1 7 7 N 1.31510 * 119.99950 * 9.54389 * 6 4 2 8 8 Si 1.86803 * 119.99853 * 189.54474 * 6 4 2 9 9 H 1.48500 * 109.47219 * 84.99476 * 8 6 4 10 10 H 1.48501 * 109.47009 * 204.99346 * 8 6 4 11 11 H 1.48501 * 109.46939 * 324.99164 * 8 6 4 12 12 N 1.46898 * 109.46629 * 119.99733 * 2 1 3 13 13 C 1.46901 * 111.00048 * 274.99723 * 12 2 1 14 14 H 1.08992 * 110.01801 * 34.30415 * 13 12 2 15 15 C 1.53880 * 110.03161 * 155.69439 * 13 12 2 16 16 H 1.08999 * 110.02963 * 0.02562 * 15 13 12 17 17 C 1.53001 * 110.03026 * 238.61919 * 15 13 12 18 18 C 1.54270 * 106.59836 * 119.28534 * 15 13 12 19 19 C 1.54889 * 104.19488 * 23.60806 * 18 15 13 20 20 C 1.54270 * 110.03106 * 272.90865 * 13 12 2 21 21 H 1.08997 * 110.49010 * 335.78751 * 20 13 12 22 22 C 1.53002 * 110.48311 * 98.43016 * 20 13 12 23 23 H 1.08994 * 109.47125 * 183.74224 * 1 2 3 24 24 H 1.08999 * 109.46923 * 303.74857 * 1 2 3 25 25 H 1.09003 * 109.46659 * 63.74361 * 1 2 3 26 26 H 0.96997 * 119.99880 * 180.02562 * 7 6 4 27 27 H 1.00905 * 110.99895 * 151.04440 * 12 2 1 28 28 H 1.09001 * 109.46980 * 59.99770 * 17 15 13 29 29 H 1.09000 * 109.46788 * 180.02562 * 17 15 13 30 30 H 1.09001 * 109.46756 * 300.00012 * 17 15 13 31 31 H 1.08995 * 110.48538 * 142.28500 * 18 15 13 32 32 H 1.08995 * 110.48503 * 264.93348 * 18 15 13 33 33 H 1.09003 * 110.75728 * 80.37253 * 19 18 15 34 34 H 1.08995 * 110.75621 * 203.74125 * 19 18 15 35 35 H 1.08995 * 109.47544 * 59.99611 * 22 20 13 36 36 H 1.08994 * 109.47240 * 180.02562 * 22 20 13 37 37 H 1.09006 * 109.47007 * 299.99913 * 22 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.5785 -1.6371 -1.1337 6 6 1.7947 -0.1775 -2.4796 7 7 1.2992 1.0354 -2.5935 8 14 2.1764 -1.1782 -4.0101 9 1 1.0246 -2.0613 -4.3241 10 1 2.4231 -0.2615 -5.1520 11 1 3.3850 -2.0072 -3.7707 12 7 2.0196 -0.6924 1.1995 13 6 2.0824 0.2227 2.3469 14 1 1.2682 0.9452 2.2929 15 6 1.9947 -0.5729 3.6611 16 1 1.9060 -1.6381 3.4475 17 6 0.7920 -0.1006 4.4804 18 6 3.3021 -0.2961 4.4319 19 6 3.7951 1.0600 3.8689 20 6 3.4395 0.9561 2.3642 21 1 4.1938 0.3753 1.8333 22 6 3.3029 2.3497 1.7477 23 1 -0.3633 -1.0254 0.0671 24 1 -0.3633 0.5709 0.8545 25 1 -0.3633 0.4547 -0.9217 26 1 1.1316 1.4102 -3.4723 27 1 2.9173 -1.1205 1.0288 28 1 -0.1217 -0.2549 3.9065 29 1 0.7389 -0.6694 5.4087 30 1 0.9024 0.9592 4.7099 31 1 3.1050 -0.2164 5.5009 32 1 4.0340 -1.0795 4.2353 33 1 3.2617 1.8886 4.3349 34 1 4.8712 1.1666 4.0053 35 1 2.5791 2.9306 2.3193 36 1 4.2699 2.8523 1.7679 37 1 2.9625 2.2589 0.7162 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306292908.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:58 Heat of formation + Delta-G solvation = -29.900364 kcal Electronic energy + Delta-G solvation = -14907.456579 eV Core-core repulsion = 12683.272987 eV Total energy + Delta-G solvation = -2224.183592 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.84394 -34.81898 -32.14206 -31.84341 -28.93160 -27.98740 -25.24245 -24.10770 -23.67413 -19.88882 -19.60166 -19.11335 -16.33747 -15.43726 -14.83596 -14.27524 -13.89011 -13.52132 -13.13276 -12.81539 -12.34144 -12.22666 -11.91118 -11.63991 -11.50608 -11.21492 -10.88375 -10.78993 -10.62144 -10.31069 -10.29128 -10.23738 -10.19741 -10.02807 -9.90814 -9.65124 -8.80970 -8.39324 -7.06658 -6.02597 -4.03608 3.32206 3.38366 3.41078 4.43763 4.93640 5.00719 5.09643 5.31622 5.51567 5.61141 5.68008 5.78987 5.88407 5.95806 6.00435 6.02004 6.13893 6.25306 6.29358 6.36798 6.47368 6.49880 6.60789 6.74696 6.77616 6.88565 6.93826 7.18481 7.26952 7.54451 7.83470 7.93653 8.23577 8.47018 8.78197 9.09012 9.60968 11.06552 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.042058 B = 0.008319 C = 0.007963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.594493 B = 3365.048469 C = 3515.630518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.205 3.795 3 H 0.018 0.982 4 C -0.519 4.519 5 H 0.058 0.942 6 C 0.064 3.936 7 N -0.889 5.889 8 Si 0.891 3.109 9 H -0.280 1.280 10 H -0.288 1.288 11 H -0.275 1.275 12 N -0.684 5.684 13 C 0.094 3.906 14 H 0.073 0.927 15 C -0.091 4.091 16 H 0.078 0.922 17 C -0.138 4.138 18 C -0.120 4.120 19 C -0.118 4.118 20 C -0.121 4.121 21 H 0.071 0.929 22 C -0.146 4.146 23 H 0.032 0.968 24 H 0.007 0.993 25 H 0.061 0.939 26 H 0.260 0.740 27 H 0.330 0.670 28 H 0.055 0.945 29 H 0.046 0.954 30 H 0.048 0.952 31 H 0.058 0.942 32 H 0.060 0.940 33 H 0.062 0.938 34 H 0.056 0.944 35 H 0.047 0.953 36 H 0.044 0.956 37 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.671 0.302 11.242 11.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.098 3.902 3 H 0.036 0.964 4 C -0.557 4.557 5 H 0.076 0.924 6 C -0.138 4.138 7 N -0.527 5.527 8 Si 0.719 3.281 9 H -0.206 1.206 10 H -0.214 1.214 11 H -0.200 1.200 12 N -0.313 5.313 13 C -0.017 4.017 14 H 0.091 0.909 15 C -0.110 4.110 16 H 0.097 0.903 17 C -0.195 4.195 18 C -0.158 4.158 19 C -0.156 4.156 20 C -0.141 4.141 21 H 0.090 0.910 22 C -0.203 4.203 23 H 0.051 0.949 24 H 0.026 0.974 25 H 0.080 0.920 26 H 0.070 0.930 27 H 0.148 0.852 28 H 0.074 0.926 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.075 0.925 35 H 0.066 0.934 36 H 0.063 0.937 37 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.972 0.185 11.242 11.415 hybrid contribution 0.919 0.090 -1.191 1.507 sum 2.890 0.275 10.051 10.462 Atomic orbital electron populations 1.21661 0.98667 0.98643 0.98755 1.19189 0.91811 0.93530 0.85694 0.96414 1.21242 1.35692 1.08063 0.90746 0.92385 1.24902 0.95335 0.94611 0.98945 1.69965 1.45102 1.13951 1.23693 0.86639 0.78709 0.80110 0.82683 1.20580 1.21441 1.20035 1.60811 1.32000 1.32526 1.06003 1.22287 0.95081 0.93047 0.91278 0.90918 1.21791 0.93678 1.00987 0.94539 0.90328 1.21805 0.98337 1.00345 0.99046 1.22415 0.97395 0.97207 0.98775 1.22530 0.99759 0.97282 0.96052 1.22754 0.99044 0.97326 0.95007 0.91043 1.21887 1.00449 0.95769 1.02218 0.94882 0.97426 0.92039 0.93000 0.85195 0.92596 0.93510 0.93330 0.92365 0.92102 0.91973 0.92527 0.93398 0.93737 0.91006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.95 9.26 37.16 0.34 -2.60 16 2 C 0.21 5.15 2.31 -68.86 -0.16 4.99 16 3 H 0.02 0.49 5.39 -51.93 -0.28 0.21 16 4 C -0.52 -14.26 8.48 -34.44 -0.29 -14.55 16 5 H 0.06 1.59 7.69 -52.49 -0.40 1.18 16 6 C 0.06 1.78 5.17 -17.82 -0.09 1.69 16 7 N -0.89 -25.55 12.16 55.43 0.67 -24.88 16 8 Si 0.89 21.44 29.55 -169.99 -5.02 16.42 16 9 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 10 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 12 N -0.68 -14.57 5.97 -99.78 -0.60 -15.16 16 13 C 0.09 1.70 2.29 -66.59 -0.15 1.55 16 14 H 0.07 1.43 6.42 -51.93 -0.33 1.09 16 15 C -0.09 -1.38 3.29 -89.50 -0.29 -1.68 16 16 H 0.08 1.28 7.92 -51.93 -0.41 0.87 16 17 C -0.14 -1.89 8.83 37.16 0.33 -1.56 16 18 C -0.12 -1.58 6.37 -25.07 -0.16 -1.74 16 19 C -0.12 -1.61 6.33 -24.70 -0.16 -1.77 16 20 C -0.12 -2.00 3.04 -88.92 -0.27 -2.27 16 21 H 0.07 1.26 7.57 -51.93 -0.39 0.86 16 22 C -0.15 -2.48 8.98 37.16 0.33 -2.15 16 23 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 24 H 0.01 0.16 7.50 -51.93 -0.39 -0.23 16 25 H 0.06 1.65 6.83 -51.93 -0.35 1.29 16 26 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 27 H 0.33 7.01 7.65 -39.29 -0.30 6.71 16 28 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 29 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.68 7.84 -51.93 -0.41 0.27 16 32 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.06 0.81 8.04 -51.93 -0.42 0.39 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.05 0.75 8.12 -51.93 -0.42 0.33 16 36 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.07 1.46 5.96 -51.93 -0.31 1.15 16 LS Contribution 285.60 15.07 4.30 4.30 Total: -1.00 -27.66 285.60 -7.73 -35.39 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: -6.52 Total: 4.02 kcal Atomic # 6 Polarization: -19.52 SS G_CDS: -0.57 Total: -20.09 kcal Atomic # 7 Polarization: -40.12 SS G_CDS: 0.08 Total: -40.04 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -27.66 -7.73 -35.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306292908.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.490 kcal (2) G-P(sol) polarization free energy of solvation -27.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds