Wall clock time and date at job start Mon Mar 30 2020 02:57:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.47112 * 2 1 4 4 C 1.50699 * 109.46951 * 239.99666 * 2 1 3 5 5 H 1.07999 * 119.99742 * 245.46372 * 4 2 1 6 6 C 1.37875 * 120.00085 * 65.46495 * 4 2 1 7 7 N 1.31510 * 119.99950 * 9.54389 * 6 4 2 8 8 Si 1.86803 * 119.99853 * 189.54474 * 6 4 2 9 9 H 1.48500 * 109.47219 * 84.99476 * 8 6 4 10 10 H 1.48501 * 109.47009 * 204.99346 * 8 6 4 11 11 H 1.48501 * 109.46939 * 324.99164 * 8 6 4 12 12 N 1.46898 * 109.46629 * 119.99733 * 2 1 3 13 13 C 1.46901 * 111.00048 * 274.99723 * 12 2 1 14 14 H 1.08992 * 110.01801 * 34.30415 * 13 12 2 15 15 C 1.53880 * 110.03161 * 155.69439 * 13 12 2 16 16 H 1.08999 * 110.02963 * 0.02562 * 15 13 12 17 17 C 1.53001 * 110.03026 * 238.61919 * 15 13 12 18 18 C 1.54270 * 106.59836 * 119.28534 * 15 13 12 19 19 C 1.54889 * 104.19488 * 23.60806 * 18 15 13 20 20 C 1.54270 * 110.03106 * 272.90865 * 13 12 2 21 21 H 1.08997 * 110.49010 * 335.78751 * 20 13 12 22 22 C 1.53002 * 110.48311 * 98.43016 * 20 13 12 23 23 H 1.08994 * 109.47125 * 183.74224 * 1 2 3 24 24 H 1.08999 * 109.46923 * 303.74857 * 1 2 3 25 25 H 1.09003 * 109.46659 * 63.74361 * 1 2 3 26 26 H 0.96997 * 119.99880 * 180.02562 * 7 6 4 27 27 H 1.00905 * 110.99895 * 151.04440 * 12 2 1 28 28 H 1.09001 * 109.46980 * 59.99770 * 17 15 13 29 29 H 1.09000 * 109.46788 * 180.02562 * 17 15 13 30 30 H 1.09001 * 109.46756 * 300.00012 * 17 15 13 31 31 H 1.08995 * 110.48538 * 142.28500 * 18 15 13 32 32 H 1.08995 * 110.48503 * 264.93348 * 18 15 13 33 33 H 1.09003 * 110.75728 * 80.37253 * 19 18 15 34 34 H 1.08995 * 110.75621 * 203.74125 * 19 18 15 35 35 H 1.08995 * 109.47544 * 59.99611 * 22 20 13 36 36 H 1.08994 * 109.47240 * 180.02562 * 22 20 13 37 37 H 1.09006 * 109.47007 * 299.99913 * 22 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.5785 -1.6371 -1.1337 6 6 1.7947 -0.1775 -2.4796 7 7 1.2992 1.0354 -2.5935 8 14 2.1764 -1.1782 -4.0101 9 1 1.0246 -2.0613 -4.3241 10 1 2.4231 -0.2615 -5.1520 11 1 3.3850 -2.0072 -3.7707 12 7 2.0196 -0.6924 1.1995 13 6 2.0824 0.2227 2.3469 14 1 1.2682 0.9452 2.2929 15 6 1.9947 -0.5729 3.6611 16 1 1.9060 -1.6381 3.4475 17 6 0.7920 -0.1006 4.4804 18 6 3.3021 -0.2961 4.4319 19 6 3.7951 1.0600 3.8689 20 6 3.4395 0.9561 2.3642 21 1 4.1938 0.3753 1.8333 22 6 3.3029 2.3497 1.7477 23 1 -0.3633 -1.0254 0.0671 24 1 -0.3633 0.5709 0.8545 25 1 -0.3633 0.4547 -0.9217 26 1 1.1316 1.4102 -3.4723 27 1 2.9173 -1.1205 1.0288 28 1 -0.1217 -0.2549 3.9065 29 1 0.7389 -0.6694 5.4087 30 1 0.9024 0.9592 4.7099 31 1 3.1050 -0.2164 5.5009 32 1 4.0340 -1.0795 4.2353 33 1 3.2617 1.8886 4.3349 34 1 4.8712 1.1666 4.0053 35 1 2.5791 2.9306 2.3193 36 1 4.2699 2.8523 1.7679 37 1 2.9625 2.2589 0.7162 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306292908.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:57 Heat of formation + Delta-G solvation = -45.978993 kcal Electronic energy + Delta-G solvation = -14908.153801 eV Core-core repulsion = 12683.272987 eV Total energy + Delta-G solvation = -2224.880813 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.20598 -36.64482 -33.98946 -33.21710 -30.56497 -29.41577 -27.30042 -25.70137 -24.84510 -21.76008 -21.00350 -20.41726 -18.33699 -16.94180 -16.66352 -15.80001 -15.44083 -14.80308 -14.64083 -14.46533 -13.99538 -13.62857 -13.30128 -13.10442 -13.05254 -12.81688 -12.64167 -12.60178 -12.42651 -12.25740 -11.81954 -11.61353 -11.45836 -11.41220 -11.30240 -11.15652 -10.85124 -10.50412 -8.80889 -8.15680 -6.23614 1.40050 1.42190 1.50667 2.41698 3.15964 3.61797 3.71256 3.88491 4.12047 4.39572 4.44268 4.57288 4.63143 4.67065 4.74080 4.84039 4.89683 4.95771 5.01123 5.04870 5.07015 5.16559 5.19664 5.28436 5.32898 5.37986 5.48694 5.51783 5.56423 5.62792 5.76320 5.89323 6.19843 6.55132 6.89496 7.08366 7.45436 8.93075 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.042058 B = 0.008319 C = 0.007963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.594493 B = 3365.048469 C = 3515.630518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.210 3.790 3 H -0.006 1.006 4 C -0.536 4.536 5 H 0.055 0.945 6 C 0.016 3.984 7 N -0.917 5.917 8 Si 0.954 3.046 9 H -0.276 1.276 10 H -0.284 1.284 11 H -0.268 1.268 12 N -0.683 5.683 13 C 0.091 3.909 14 H 0.053 0.947 15 C -0.088 4.088 16 H 0.067 0.933 17 C -0.134 4.134 18 C -0.112 4.112 19 C -0.108 4.108 20 C -0.122 4.122 21 H 0.057 0.943 22 C -0.140 4.140 23 H 0.031 0.969 24 H 0.021 0.979 25 H 0.036 0.964 26 H 0.261 0.739 27 H 0.329 0.671 28 H 0.039 0.961 29 H 0.070 0.930 30 H 0.055 0.945 31 H 0.083 0.917 32 H 0.064 0.936 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.057 0.943 36 H 0.061 0.939 37 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.456 -0.187 12.757 13.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.101 3.899 3 H 0.011 0.989 4 C -0.575 4.575 5 H 0.073 0.927 6 C -0.183 4.183 7 N -0.557 5.557 8 Si 0.780 3.220 9 H -0.202 1.202 10 H -0.210 1.210 11 H -0.193 1.193 12 N -0.312 5.312 13 C -0.020 4.020 14 H 0.071 0.929 15 C -0.107 4.107 16 H 0.085 0.915 17 C -0.192 4.192 18 C -0.150 4.150 19 C -0.146 4.146 20 C -0.142 4.142 21 H 0.076 0.924 22 C -0.198 4.198 23 H 0.050 0.950 24 H 0.040 0.960 25 H 0.055 0.945 26 H 0.070 0.930 27 H 0.147 0.853 28 H 0.058 0.942 29 H 0.088 0.912 30 H 0.075 0.925 31 H 0.102 0.898 32 H 0.083 0.917 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.076 0.924 36 H 0.080 0.920 37 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 2.761 -0.310 12.777 13.075 hybrid contribution 0.668 0.270 -1.637 1.789 sum 3.429 -0.040 11.139 11.655 Atomic orbital electron populations 1.21497 0.98623 0.98409 0.98043 1.18984 0.91796 0.92314 0.86756 0.98882 1.21563 1.35823 1.08060 0.92029 0.92718 1.25672 0.95269 0.95490 1.01878 1.70083 1.45974 1.15260 1.24335 0.85633 0.78697 0.78662 0.79010 1.20173 1.21018 1.19286 1.60767 1.31941 1.33063 1.05471 1.22398 0.95383 0.92826 0.91384 0.92866 1.21746 0.95909 0.99712 0.93367 0.91484 1.21776 0.96709 1.01214 0.99483 1.22386 0.95909 0.96894 0.99798 1.22484 1.01056 0.98010 0.93073 1.22692 0.97682 0.96356 0.97474 0.92411 1.21810 1.01509 0.96721 0.99720 0.94981 0.95992 0.94502 0.92966 0.85339 0.94215 0.91152 0.92546 0.89849 0.91722 0.90915 0.90804 0.92355 0.91963 0.95278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.44 9.26 71.98 0.67 -4.77 16 2 C 0.21 10.82 2.31 44.17 0.10 10.92 16 3 H -0.01 -0.36 5.39 -2.39 -0.01 -0.37 16 4 C -0.54 -30.00 8.48 25.60 0.22 -29.78 16 5 H 0.05 3.02 7.69 -2.91 -0.02 3.00 16 6 C 0.02 0.92 5.17 84.65 0.44 1.36 16 7 N -0.92 -53.90 12.16 21.45 0.26 -53.64 16 8 Si 0.95 44.27 29.55 68.60 2.03 46.30 16 9 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 10 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 11 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 12 N -0.68 -29.49 5.97 -469.59 -2.80 -32.30 16 13 C 0.09 3.24 2.29 45.64 0.10 3.35 16 14 H 0.05 2.10 6.42 -2.39 -0.02 2.09 16 15 C -0.09 -2.52 3.29 -10.07 -0.03 -2.56 16 16 H 0.07 2.09 7.92 -2.39 -0.02 2.07 16 17 C -0.13 -3.37 8.83 71.98 0.64 -2.73 16 18 C -0.11 -2.58 6.37 31.67 0.20 -2.38 16 19 C -0.11 -2.62 6.33 31.91 0.20 -2.41 16 20 C -0.12 -3.93 3.04 -9.69 -0.03 -3.96 16 21 H 0.06 2.02 7.57 -2.39 -0.02 2.00 16 22 C -0.14 -4.76 8.98 71.98 0.65 -4.12 16 23 H 0.03 1.57 8.14 -2.39 -0.02 1.55 16 24 H 0.02 0.99 7.50 -2.39 -0.02 0.98 16 25 H 0.04 2.02 6.83 -2.39 -0.02 2.00 16 26 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 27 H 0.33 14.19 7.65 -89.69 -0.69 13.50 16 28 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.08 1.56 7.84 -2.39 -0.02 1.54 16 32 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.07 1.63 8.04 -2.39 -0.02 1.61 16 34 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.06 1.81 8.12 -2.39 -0.02 1.79 16 36 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.03 1.22 5.96 -2.38 -0.01 1.20 16 Total: -1.00 -59.72 285.60 2.97 -56.74 By element: Atomic # 1 Polarization: 19.64 SS G_CDS: 0.34 Total: 19.98 kcal Atomic # 6 Polarization: -40.24 SS G_CDS: 3.15 Total: -37.09 kcal Atomic # 7 Polarization: -83.39 SS G_CDS: -2.54 Total: -85.93 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Total: -59.72 2.97 -56.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306292908.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.764 kcal (2) G-P(sol) polarization free energy of solvation -59.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds