Wall clock time and date at job start Mon Mar 30 2020 02:54:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.47066 * 2 1 4 4 C 1.50701 * 109.46865 * 240.00428 * 2 1 3 5 5 H 1.08002 * 120.00375 * 239.99688 * 4 2 1 6 6 C 1.37882 * 119.99767 * 60.00343 * 4 2 1 7 7 N 1.31509 * 120.00264 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 119.99866 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47026 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.46853 * 119.99822 * 8 6 4 11 11 H 1.48499 * 109.47137 * 239.99714 * 8 6 4 12 12 N 1.46894 * 109.47125 * 120.00895 * 2 1 3 13 13 C 1.46904 * 111.00044 * 304.70154 * 12 2 1 14 14 C 1.46908 * 110.99825 * 180.75148 * 12 2 1 15 15 H 1.08999 * 110.01323 * 308.04152 * 14 12 2 16 16 C 1.53866 * 110.03209 * 69.43205 * 14 12 2 17 17 C 1.54270 * 106.59720 * 119.28718 * 16 14 12 18 18 C 1.54882 * 104.19639 * 23.60935 * 17 16 14 19 19 H 1.08992 * 110.75881 * 80.37598 * 18 17 16 20 20 C 1.52999 * 110.75582 * 203.55976 * 18 17 16 21 21 C 1.54266 * 110.03170 * 186.65028 * 14 12 2 22 22 H 1.08998 * 109.46428 * 306.07300 * 1 2 3 23 23 H 1.08996 * 109.46796 * 66.07760 * 1 2 3 24 24 H 1.08997 * 109.46726 * 186.07881 * 1 2 3 25 25 H 0.97002 * 120.00268 * 180.02562 * 7 6 4 26 26 H 1.08993 * 109.46984 * 60.00104 * 13 12 2 27 27 H 1.08997 * 109.47327 * 180.02562 * 13 12 2 28 28 H 1.09006 * 109.46627 * 300.00427 * 13 12 2 29 29 H 1.08996 * 110.03477 * 238.56697 * 16 14 12 30 30 H 1.09001 * 110.03889 * 0.02562 * 16 14 12 31 31 H 1.09003 * 110.48419 * 142.28868 * 17 16 14 32 32 H 1.09004 * 110.48386 * 264.92564 * 17 16 14 33 33 H 1.09007 * 109.47487 * 58.54465 * 20 18 17 34 34 H 1.08996 * 109.47414 * 178.54309 * 20 18 17 35 35 H 1.09003 * 109.47282 * 298.54686 * 20 18 17 36 36 H 1.09002 * 110.48304 * 335.78261 * 21 14 12 37 37 H 1.08998 * 110.48660 * 98.42239 * 21 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1316 6 6 1.6992 -0.2391 -2.4828 7 7 0.9428 0.8299 -2.6033 8 14 2.3224 -1.1191 -4.0081 9 1 3.1483 -2.2853 -3.6041 10 1 1.1676 -1.5861 -4.8167 11 1 3.1471 -0.1853 -4.8162 12 7 2.0197 -0.6927 1.1993 13 6 1.4591 -0.0947 2.4184 14 6 3.4882 -0.6967 1.2422 15 1 3.8878 -1.0762 0.3018 16 6 4.0118 0.7268 1.5012 17 6 4.8037 0.6712 2.8239 18 6 5.2222 -0.8144 2.9539 19 1 6.0973 -1.0244 2.3390 20 6 5.4902 -1.1762 4.4161 21 6 3.9801 -1.5687 2.4158 22 1 -0.3632 0.6051 0.8306 23 1 -0.3633 0.4167 -0.9394 24 1 -0.3633 -1.0219 0.1088 25 1 0.7082 1.1612 -3.4843 26 1 0.3719 -0.1677 2.3920 27 1 1.8382 -0.6261 3.2912 28 1 1.7515 0.9538 2.4763 29 1 4.6663 1.0378 0.6870 30 1 3.1764 1.4206 1.5954 31 1 5.6837 1.3120 2.7688 32 1 4.1695 0.9636 3.6608 33 1 4.5937 -0.9885 5.0071 34 1 5.7575 -2.2306 4.4864 35 1 6.3103 -0.5674 4.7967 36 1 3.2128 -1.6386 3.1869 37 1 4.2590 -2.5614 2.0627 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306428320.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:32 Heat of formation + Delta-G solvation = -9.061336 kcal Electronic energy + Delta-G solvation = -15023.087495 eV Core-core repulsion = 12799.807551 eV Total energy + Delta-G solvation = -2223.279944 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.91075 -35.49078 -32.63553 -30.28658 -28.86265 -27.67193 -25.97768 -24.40089 -23.36507 -20.33540 -19.48732 -18.36121 -16.10803 -15.80528 -14.95673 -14.68134 -13.89189 -13.64924 -13.13466 -12.78662 -12.47079 -12.26411 -11.81324 -11.67977 -11.23314 -11.02265 -10.91864 -10.63419 -10.60233 -10.52664 -10.32381 -10.16719 -10.10242 -9.92737 -9.74300 -9.52690 -8.80248 -8.36787 -7.02178 -5.96784 -4.00853 3.31605 3.39495 3.44140 4.44552 4.85184 5.05389 5.11302 5.32455 5.40799 5.64078 5.72425 5.83087 5.89497 6.00131 6.10897 6.17218 6.19948 6.23198 6.25042 6.31273 6.41972 6.48629 6.62626 6.77067 6.81864 6.93073 6.99772 7.15212 7.23056 7.58796 7.81955 7.87912 8.33130 8.41285 8.68705 9.06795 9.63987 11.09720 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.038169 B = 0.009149 C = 0.008194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.404606 B = 3059.554692 C = 3416.207476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.210 3.790 3 H 0.001 0.999 4 C -0.497 4.497 5 H 0.062 0.938 6 C 0.057 3.943 7 N -0.894 5.894 8 Si 0.893 3.107 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.286 1.286 12 N -0.530 5.530 13 C 0.020 3.980 14 C 0.090 3.910 15 H 0.092 0.908 16 C -0.153 4.153 17 C -0.115 4.115 18 C -0.100 4.100 19 H 0.071 0.929 20 C -0.140 4.140 21 C -0.114 4.114 22 H 0.007 0.993 23 H 0.086 0.914 24 H 0.032 0.968 25 H 0.259 0.741 26 H 0.060 0.940 27 H 0.052 0.948 28 H 0.015 0.985 29 H 0.059 0.941 30 H 0.065 0.935 31 H 0.054 0.946 32 H 0.058 0.942 33 H 0.052 0.948 34 H 0.051 0.949 35 H 0.049 0.951 36 H 0.069 0.931 37 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.917 -1.461 9.974 11.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.104 3.896 3 H 0.019 0.981 4 C -0.536 4.536 5 H 0.080 0.920 6 C -0.144 4.144 7 N -0.534 5.534 8 Si 0.722 3.278 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.212 1.212 12 N -0.254 5.254 13 C -0.128 4.128 14 C -0.019 4.019 15 H 0.110 0.890 16 C -0.192 4.192 17 C -0.153 4.153 18 C -0.119 4.119 19 H 0.089 0.911 20 C -0.197 4.197 21 C -0.152 4.152 22 H 0.026 0.974 23 H 0.105 0.895 24 H 0.051 0.949 25 H 0.069 0.931 26 H 0.079 0.921 27 H 0.070 0.930 28 H 0.033 0.967 29 H 0.078 0.922 30 H 0.084 0.916 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.088 0.912 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 5.653 -1.841 9.788 11.452 hybrid contribution 0.514 0.536 -0.893 1.162 sum 6.167 -1.305 8.895 10.902 Atomic orbital electron populations 1.21866 0.98003 0.98634 1.00863 1.19239 0.92032 0.92204 0.86092 0.98146 1.21190 1.30529 1.12055 0.89803 0.91993 1.24929 0.95344 0.95116 0.98967 1.69898 1.37168 1.23184 1.23174 0.86509 0.78604 0.79648 0.83070 1.19745 1.21073 1.21223 1.62337 1.05510 1.54898 1.02631 1.22404 0.99995 0.96524 0.93920 1.22216 0.88827 0.92423 0.98474 0.89036 1.22767 0.99794 1.00167 0.96497 1.22376 0.99070 0.95837 0.98009 1.22120 0.98382 0.95621 0.95797 0.91064 1.21736 1.01051 1.00769 0.96171 1.22578 0.96144 0.98291 0.98163 0.97413 0.89502 0.94903 0.93132 0.92133 0.92985 0.96651 0.92218 0.91636 0.92694 0.92332 0.92892 0.93004 0.93232 0.91220 0.92151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.38 8.44 37.16 0.31 -3.07 16 2 C 0.21 5.36 1.85 -68.86 -0.13 5.24 16 3 H 0.00 0.03 6.93 -51.93 -0.36 -0.33 16 4 C -0.50 -13.73 7.83 -34.44 -0.27 -14.00 16 5 H 0.06 1.72 6.79 -52.49 -0.36 1.36 16 6 C 0.06 1.59 5.29 -17.82 -0.09 1.49 16 7 N -0.89 -25.77 11.29 55.43 0.63 -25.14 16 8 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 9 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 10 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 N -0.53 -11.58 4.62 -226.95 -1.05 -12.63 16 13 C 0.02 0.38 8.40 60.07 0.50 0.88 16 14 C 0.09 1.76 2.77 -66.59 -0.18 1.58 16 15 H 0.09 2.02 6.34 -51.93 -0.33 1.69 16 16 C -0.15 -2.78 5.37 -25.62 -0.14 -2.92 16 17 C -0.12 -1.68 6.27 -25.07 -0.16 -1.84 16 18 C -0.10 -1.38 3.49 -88.59 -0.31 -1.69 16 19 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 20 C -0.14 -1.59 9.28 37.16 0.34 -1.25 16 21 C -0.11 -1.83 5.77 -25.03 -0.14 -1.97 16 22 H 0.01 0.16 6.71 -51.93 -0.35 -0.19 16 23 H 0.09 2.38 5.93 -51.93 -0.31 2.07 16 24 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 26 H 0.06 1.14 6.36 -51.93 -0.33 0.81 16 27 H 0.05 0.86 5.98 -51.93 -0.31 0.55 16 28 H 0.02 0.29 6.16 -51.93 -0.32 -0.03 16 29 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.07 1.29 5.13 -51.93 -0.27 1.03 16 31 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.06 0.83 8.05 -51.93 -0.42 0.41 16 33 H 0.05 0.60 8.13 -51.93 -0.42 0.17 16 34 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.07 1.11 5.75 -51.93 -0.30 0.81 16 37 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 275.08 15.07 4.15 4.15 Total: -1.00 -28.14 275.08 -7.72 -35.86 By element: Atomic # 1 Polarization: 4.95 SS G_CDS: -6.16 Total: -1.21 kcal Atomic # 6 Polarization: -17.28 SS G_CDS: -0.26 Total: -17.54 kcal Atomic # 7 Polarization: -37.35 SS G_CDS: -0.42 Total: -37.77 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -28.14 -7.72 -35.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306428320.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.801 kcal (2) G-P(sol) polarization free energy of solvation -28.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds