Wall clock time and date at job start Mon Mar 30 2020 02:54:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.47066 * 2 1 4 4 C 1.50701 * 109.46865 * 240.00428 * 2 1 3 5 5 H 1.08002 * 120.00375 * 239.99688 * 4 2 1 6 6 C 1.37882 * 119.99767 * 60.00343 * 4 2 1 7 7 N 1.31509 * 120.00264 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 119.99866 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47026 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.46853 * 119.99822 * 8 6 4 11 11 H 1.48499 * 109.47137 * 239.99714 * 8 6 4 12 12 N 1.46894 * 109.47125 * 120.00895 * 2 1 3 13 13 C 1.46904 * 111.00044 * 304.70154 * 12 2 1 14 14 C 1.46908 * 110.99825 * 180.75148 * 12 2 1 15 15 H 1.08999 * 110.01323 * 308.04152 * 14 12 2 16 16 C 1.53866 * 110.03209 * 69.43205 * 14 12 2 17 17 C 1.54270 * 106.59720 * 119.28718 * 16 14 12 18 18 C 1.54882 * 104.19639 * 23.60935 * 17 16 14 19 19 H 1.08992 * 110.75881 * 80.37598 * 18 17 16 20 20 C 1.52999 * 110.75582 * 203.55976 * 18 17 16 21 21 C 1.54266 * 110.03170 * 186.65028 * 14 12 2 22 22 H 1.08998 * 109.46428 * 306.07300 * 1 2 3 23 23 H 1.08996 * 109.46796 * 66.07760 * 1 2 3 24 24 H 1.08997 * 109.46726 * 186.07881 * 1 2 3 25 25 H 0.97002 * 120.00268 * 180.02562 * 7 6 4 26 26 H 1.08993 * 109.46984 * 60.00104 * 13 12 2 27 27 H 1.08997 * 109.47327 * 180.02562 * 13 12 2 28 28 H 1.09006 * 109.46627 * 300.00427 * 13 12 2 29 29 H 1.08996 * 110.03477 * 238.56697 * 16 14 12 30 30 H 1.09001 * 110.03889 * 0.02562 * 16 14 12 31 31 H 1.09003 * 110.48419 * 142.28868 * 17 16 14 32 32 H 1.09004 * 110.48386 * 264.92564 * 17 16 14 33 33 H 1.09007 * 109.47487 * 58.54465 * 20 18 17 34 34 H 1.08996 * 109.47414 * 178.54309 * 20 18 17 35 35 H 1.09003 * 109.47282 * 298.54686 * 20 18 17 36 36 H 1.09002 * 110.48304 * 335.78261 * 21 14 12 37 37 H 1.08998 * 110.48660 * 98.42239 * 21 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1316 6 6 1.6992 -0.2391 -2.4828 7 7 0.9428 0.8299 -2.6033 8 14 2.3224 -1.1191 -4.0081 9 1 3.1483 -2.2853 -3.6041 10 1 1.1676 -1.5861 -4.8167 11 1 3.1471 -0.1853 -4.8162 12 7 2.0197 -0.6927 1.1993 13 6 1.4591 -0.0947 2.4184 14 6 3.4882 -0.6967 1.2422 15 1 3.8878 -1.0762 0.3018 16 6 4.0118 0.7268 1.5012 17 6 4.8037 0.6712 2.8239 18 6 5.2222 -0.8144 2.9539 19 1 6.0973 -1.0244 2.3390 20 6 5.4902 -1.1762 4.4161 21 6 3.9801 -1.5687 2.4158 22 1 -0.3632 0.6051 0.8306 23 1 -0.3633 0.4167 -0.9394 24 1 -0.3633 -1.0219 0.1088 25 1 0.7082 1.1612 -3.4843 26 1 0.3719 -0.1677 2.3920 27 1 1.8382 -0.6261 3.2912 28 1 1.7515 0.9538 2.4763 29 1 4.6663 1.0378 0.6870 30 1 3.1764 1.4206 1.5954 31 1 5.6837 1.3120 2.7688 32 1 4.1695 0.9636 3.6608 33 1 4.5937 -0.9885 5.0071 34 1 5.7575 -2.2306 4.4864 35 1 6.3103 -0.5674 4.7967 36 1 3.2128 -1.6386 3.1869 37 1 4.2590 -2.5614 2.0627 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306428320.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:32 Heat of formation + Delta-G solvation = -25.670811 kcal Electronic energy + Delta-G solvation = -15023.807736 eV Core-core repulsion = 12799.807551 eV Total energy + Delta-G solvation = -2224.000185 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.40737 -37.10065 -34.59617 -31.75388 -30.49923 -29.22487 -27.65041 -26.21706 -24.77648 -22.09035 -20.71816 -20.06057 -18.13049 -17.40887 -16.63711 -16.22613 -15.57999 -15.26073 -14.66198 -14.07357 -13.89573 -13.72958 -13.52132 -13.09752 -12.91983 -12.71679 -12.54699 -12.49027 -12.37186 -12.01570 -11.98640 -11.76148 -11.52566 -11.45453 -11.23176 -11.06869 -10.82443 -10.49481 -8.78917 -8.10666 -6.21919 1.39086 1.40905 1.52754 2.41943 3.16719 3.39413 3.80261 3.84368 4.08538 4.42924 4.50345 4.56194 4.68538 4.74325 4.75980 4.77276 4.79044 4.83994 4.95616 5.01704 5.09797 5.12169 5.16654 5.20401 5.24494 5.37515 5.41805 5.52322 5.56311 5.65668 5.74406 5.83872 6.31059 6.51520 6.82013 6.95027 7.47170 8.95161 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.038169 B = 0.009149 C = 0.008194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.404606 B = 3059.554692 C = 3416.207476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.216 3.784 3 H -0.033 1.033 4 C -0.512 4.512 5 H 0.054 0.946 6 C 0.010 3.990 7 N -0.922 5.922 8 Si 0.957 3.043 9 H -0.268 1.268 10 H -0.279 1.279 11 H -0.281 1.281 12 N -0.539 5.539 13 C 0.023 3.977 14 C 0.084 3.916 15 H 0.058 0.942 16 C -0.151 4.151 17 C -0.106 4.106 18 C -0.093 4.093 19 H 0.073 0.927 20 C -0.135 4.135 21 C -0.106 4.106 22 H 0.027 0.973 23 H 0.060 0.940 24 H 0.032 0.968 25 H 0.261 0.739 26 H 0.059 0.941 27 H 0.080 0.920 28 H 0.014 0.986 29 H 0.043 0.957 30 H 0.045 0.955 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.056 0.944 34 H 0.061 0.939 35 H 0.064 0.936 36 H 0.076 0.924 37 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.955 -2.249 11.417 13.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.109 3.891 3 H -0.016 1.016 4 C -0.550 4.550 5 H 0.072 0.928 6 C -0.189 4.189 7 N -0.562 5.562 8 Si 0.782 3.218 9 H -0.193 1.193 10 H -0.205 1.205 11 H -0.207 1.207 12 N -0.263 5.263 13 C -0.125 4.125 14 C -0.025 4.025 15 H 0.076 0.924 16 C -0.190 4.190 17 C -0.143 4.143 18 C -0.112 4.112 19 H 0.092 0.908 20 C -0.192 4.192 21 C -0.144 4.144 22 H 0.046 0.954 23 H 0.079 0.921 24 H 0.051 0.949 25 H 0.070 0.930 26 H 0.078 0.922 27 H 0.098 0.902 28 H 0.032 0.968 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.089 0.911 32 H 0.087 0.913 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.094 0.906 37 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 6.699 -2.635 11.250 13.356 hybrid contribution 0.187 0.803 -1.335 1.569 sum 6.885 -1.833 9.915 12.210 Atomic orbital electron populations 1.21698 0.97710 0.98651 1.00267 1.19005 0.92206 0.90428 0.87419 1.01599 1.21428 1.30552 1.11945 0.91115 0.92826 1.25693 0.95517 0.95817 1.01830 1.70019 1.37990 1.24319 1.23873 0.85524 0.78178 0.78631 0.79428 1.19268 1.20485 1.20729 1.62280 1.07038 1.54521 1.02438 1.22441 0.99922 0.96728 0.93433 1.22253 0.87570 0.94015 0.98687 0.92411 1.22688 0.99278 0.98631 0.98400 1.22337 0.99211 0.97026 0.95770 1.22094 0.97150 0.94254 0.97686 0.90818 1.21693 1.01859 1.01716 0.93925 1.22519 0.97354 0.97870 0.96610 0.95388 0.92109 0.94932 0.93011 0.92202 0.90155 0.96761 0.93815 0.93664 0.91097 0.91276 0.92511 0.92039 0.91705 0.90586 0.91973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.34 8.44 71.98 0.61 -5.73 16 2 C 0.22 11.33 1.85 44.17 0.08 11.41 16 3 H -0.03 -1.95 6.93 -2.39 -0.02 -1.96 16 4 C -0.51 -28.98 7.83 25.60 0.20 -28.78 16 5 H 0.05 3.06 6.79 -2.91 -0.02 3.04 16 6 C 0.01 0.54 5.29 84.66 0.45 0.98 16 7 N -0.92 -54.24 11.29 21.45 0.24 -53.99 16 8 Si 0.96 44.69 29.54 68.60 2.03 46.72 16 9 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 10 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 11 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 12 N -0.54 -23.61 4.62 -871.94 -4.03 -27.64 16 13 C 0.02 0.83 8.40 127.69 1.07 1.90 16 14 C 0.08 3.30 2.77 45.64 0.13 3.43 16 15 H 0.06 2.63 6.34 -2.39 -0.02 2.62 16 16 C -0.15 -5.50 5.37 31.32 0.17 -5.33 16 17 C -0.11 -2.84 6.27 31.67 0.20 -2.65 16 18 C -0.09 -2.30 3.49 -9.48 -0.03 -2.33 16 19 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 20 C -0.13 -2.53 9.28 71.98 0.67 -1.86 16 21 C -0.11 -3.20 5.77 31.69 0.18 -3.02 16 22 H 0.03 1.25 6.71 -2.39 -0.02 1.23 16 23 H 0.06 3.40 5.93 -2.39 -0.01 3.39 16 24 H 0.03 1.59 8.14 -2.39 -0.02 1.57 16 25 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 26 H 0.06 2.17 6.36 -2.39 -0.02 2.15 16 27 H 0.08 2.46 5.98 -2.39 -0.01 2.44 16 28 H 0.01 0.52 6.16 -2.38 -0.01 0.51 16 29 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.04 1.82 5.13 -2.39 -0.01 1.81 16 31 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.07 1.74 8.05 -2.38 -0.02 1.72 16 33 H 0.06 1.04 8.13 -2.38 -0.02 1.02 16 34 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.08 2.21 5.75 -2.39 -0.01 2.19 16 37 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 Total: -1.00 -61.08 275.08 2.99 -58.09 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: 1.02 Total: 8.80 kcal Atomic # 6 Polarization: -35.70 SS G_CDS: 3.72 Total: -31.98 kcal Atomic # 7 Polarization: -77.85 SS G_CDS: -3.78 Total: -81.63 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Total: -61.08 2.99 -58.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306428320.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.419 kcal (2) G-P(sol) polarization free energy of solvation -61.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds