Wall clock time and date at job start Mon Mar 30 2020 02:54:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.47632 * 2 1 4 4 C 1.50703 * 109.47051 * 120.00046 * 2 1 3 5 5 H 1.08003 * 119.99933 * 119.99937 * 4 2 1 6 6 C 1.37871 * 120.00051 * 299.99845 * 4 2 1 7 7 N 1.31513 * 120.00024 * 0.02562 * 6 4 2 8 8 Si 1.86795 * 120.00110 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47083 * 90.00503 * 8 6 4 10 10 H 1.48503 * 109.47455 * 210.00007 * 8 6 4 11 11 H 1.48500 * 109.47399 * 330.00435 * 8 6 4 12 12 N 1.46908 * 109.47369 * 239.99843 * 2 1 3 13 13 C 1.46899 * 110.99676 * 296.09691 * 12 2 1 14 14 C 1.46894 * 111.00291 * 172.13971 * 12 2 1 15 15 H 1.09004 * 110.53745 * 59.37973 * 14 12 2 16 16 C 1.54889 * 110.48687 * 296.76952 * 14 12 2 17 17 C 1.54890 * 102.74929 * 203.37827 * 16 14 12 18 18 C 1.54267 * 104.19467 * 37.94234 * 17 16 14 19 19 H 1.08988 * 110.07222 * 95.70229 * 18 17 16 20 20 C 1.53003 * 110.02853 * 217.10744 * 18 17 16 21 21 C 1.53872 * 106.59691 * 336.38866 * 18 17 16 22 22 H 1.08996 * 109.47288 * 305.48002 * 1 2 3 23 23 H 1.09006 * 109.47047 * 65.48126 * 1 2 3 24 24 H 1.09003 * 109.47023 * 185.47139 * 1 2 3 25 25 H 0.97002 * 120.00108 * 180.02562 * 7 6 4 26 26 H 1.08992 * 109.47492 * 296.03942 * 13 12 2 27 27 H 1.08995 * 109.47589 * 56.05090 * 13 12 2 28 28 H 1.09004 * 109.46502 * 176.04064 * 13 12 2 29 29 H 1.08998 * 110.75746 * 321.69197 * 16 14 12 30 30 H 1.09001 * 110.76008 * 84.87561 * 16 14 12 31 31 H 1.08997 * 110.48429 * 279.25868 * 17 16 14 32 32 H 1.09003 * 110.48590 * 156.62193 * 17 16 14 33 33 H 1.08996 * 109.46969 * 177.16473 * 20 18 17 34 34 H 1.08995 * 109.47263 * 57.16694 * 20 18 17 35 35 H 1.09000 * 109.46910 * 297.16356 * 20 18 17 36 36 H 1.08998 * 110.03036 * 119.28656 * 21 18 17 37 37 H 1.09007 * 110.03016 * 240.71631 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 0.9428 0.8296 2.6034 8 14 2.3213 -1.1204 4.0079 9 1 3.6296 -0.5459 4.4124 10 1 1.3431 -0.9493 5.1120 11 1 2.4858 -2.5663 3.7119 12 7 2.0197 -0.6926 -1.1995 13 6 1.6264 -2.1079 -1.1875 14 6 3.4760 -0.5519 -1.3309 15 1 3.9806 -0.9672 -0.4585 16 6 3.8617 0.9358 -1.5231 17 6 5.2380 0.8438 -2.2278 18 6 5.0911 -0.3532 -3.1898 19 1 4.8192 -0.0020 -4.1851 20 6 6.4022 -1.1395 -3.2520 21 6 3.9708 -1.2405 -2.6195 22 1 -0.3634 0.5964 0.8368 23 1 -0.3633 0.4265 -0.9350 24 1 -0.3633 -1.0230 0.0980 25 1 0.7087 1.1612 3.4844 26 1 2.1034 -2.6105 -0.3462 27 1 0.5435 -2.1833 -1.0894 28 1 1.9406 -2.5800 -2.1185 29 1 3.1360 1.4442 -2.1579 30 1 3.9504 1.4395 -0.5605 31 1 6.0271 0.6540 -1.5003 32 1 5.4433 1.7580 -2.7848 33 1 6.2732 -2.0107 -3.8942 34 1 6.6784 -1.4651 -2.2492 35 1 7.1888 -0.5028 -3.6569 36 1 3.1548 -1.3193 -3.3378 37 1 4.3612 -2.2314 -2.3871 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306428321.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:35 Heat of formation + Delta-G solvation = -16.517763 kcal Electronic energy + Delta-G solvation = -14996.652573 eV Core-core repulsion = 12773.049295 eV Total energy + Delta-G solvation = -2223.603279 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.58044 -35.75719 -32.51209 -30.31303 -29.19604 -26.95800 -25.65938 -24.95240 -23.12619 -20.36463 -19.22953 -18.64432 -16.09399 -15.79208 -14.74032 -14.53778 -13.91635 -13.33424 -13.05095 -12.92023 -12.67455 -12.26242 -11.80174 -11.49197 -11.16392 -11.03661 -10.87332 -10.68328 -10.39577 -10.35694 -10.24904 -10.19479 -10.11964 -9.94443 -9.69471 -9.50941 -9.06994 -8.35244 -7.04880 -5.95247 -4.06981 3.27888 3.35129 3.38016 4.42427 4.98900 5.05591 5.10427 5.30242 5.37072 5.69490 5.72732 5.92311 5.94292 6.08434 6.17330 6.23705 6.28384 6.33731 6.42243 6.43956 6.53066 6.63502 6.81119 6.83252 6.85137 7.02087 7.06059 7.12121 7.29486 7.65036 7.77269 8.04081 8.23914 8.41759 8.53182 9.03516 9.60021 11.05218 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.033843 B = 0.009398 C = 0.008711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.146157 B = 2978.595025 C = 3213.561022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.204 3.796 3 H 0.041 0.959 4 C -0.539 4.539 5 H 0.055 0.945 6 C 0.067 3.933 7 N -0.888 5.888 8 Si 0.885 3.115 9 H -0.281 1.281 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.536 5.536 13 C 0.034 3.966 14 C 0.090 3.910 15 H 0.047 0.953 16 C -0.110 4.110 17 C -0.119 4.119 18 C -0.095 4.095 19 H 0.065 0.935 20 C -0.143 4.143 21 C -0.115 4.115 22 H 0.079 0.921 23 H 0.014 0.986 24 H 0.026 0.974 25 H 0.260 0.740 26 H 0.027 0.973 27 H 0.058 0.942 28 H 0.040 0.960 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.061 0.939 32 H 0.057 0.943 33 H 0.049 0.951 34 H 0.054 0.946 35 H 0.048 0.952 36 H 0.067 0.933 37 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.303 -2.126 -8.667 10.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.098 3.902 3 H 0.059 0.941 4 C -0.578 4.578 5 H 0.073 0.927 6 C -0.135 4.135 7 N -0.526 5.526 8 Si 0.713 3.287 9 H -0.208 1.208 10 H -0.212 1.212 11 H -0.201 1.201 12 N -0.260 5.260 13 C -0.115 4.115 14 C -0.019 4.019 15 H 0.065 0.935 16 C -0.148 4.148 17 C -0.157 4.157 18 C -0.114 4.114 19 H 0.084 0.916 20 C -0.200 4.200 21 C -0.153 4.153 22 H 0.098 0.902 23 H 0.033 0.967 24 H 0.045 0.955 25 H 0.070 0.930 26 H 0.045 0.955 27 H 0.077 0.923 28 H 0.058 0.942 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.068 0.932 34 H 0.073 0.927 35 H 0.067 0.933 36 H 0.086 0.914 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 5.984 -1.791 -8.935 10.902 hybrid contribution 0.677 -0.920 1.759 2.097 sum 6.661 -2.711 -7.176 10.160 Atomic orbital electron populations 1.21768 0.97962 0.99649 0.99238 1.19285 0.92126 0.94378 0.84416 0.94089 1.21714 1.31545 1.12739 0.91771 0.92721 1.24899 0.94926 0.94883 0.98784 1.69896 1.36575 1.22853 1.23309 0.86705 0.78646 0.80126 0.83180 1.20763 1.21200 1.20111 1.62651 1.09876 1.11779 1.41685 1.22159 1.00636 0.90299 0.98389 1.22230 0.89623 0.94822 0.95267 0.93511 1.22433 0.95174 0.96922 1.00238 1.22413 0.98259 0.97130 0.97905 1.21694 0.94955 0.95794 0.98912 0.91610 1.21887 0.97073 0.99537 1.01505 1.22322 0.97196 0.97721 0.98030 0.90236 0.96730 0.95485 0.93004 0.95474 0.92333 0.94154 0.91336 0.91516 0.92019 0.92397 0.93192 0.92724 0.93259 0.91394 0.92860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.17 8.61 37.16 0.32 -2.85 16 2 C 0.20 5.15 2.20 -68.86 -0.15 5.00 16 3 H 0.04 1.13 6.76 -51.93 -0.35 0.77 16 4 C -0.54 -14.62 7.12 -34.44 -0.25 -14.87 16 5 H 0.05 1.50 5.86 -52.48 -0.31 1.20 16 6 C 0.07 1.86 5.30 -17.82 -0.09 1.76 16 7 N -0.89 -25.31 11.38 55.43 0.63 -24.68 16 8 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 9 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 10 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 12 N -0.54 -11.68 4.56 -226.31 -1.03 -12.71 16 13 C 0.03 0.69 8.62 60.06 0.52 1.21 16 14 C 0.09 1.76 2.34 -66.06 -0.15 1.61 16 15 H 0.05 1.04 7.06 -51.93 -0.37 0.67 16 16 C -0.11 -2.01 5.38 -24.74 -0.13 -2.14 16 17 C -0.12 -1.76 6.36 -25.07 -0.16 -1.92 16 18 C -0.09 -1.31 3.50 -89.50 -0.31 -1.63 16 19 H 0.07 0.86 8.14 -51.94 -0.42 0.44 16 20 C -0.14 -1.71 8.85 37.16 0.33 -1.38 16 21 C -0.11 -1.85 4.92 -25.62 -0.13 -1.97 16 22 H 0.08 2.14 6.24 -51.93 -0.32 1.81 16 23 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 24 H 0.03 0.65 6.69 -51.93 -0.35 0.30 16 25 H 0.26 7.09 8.31 -40.82 -0.34 6.76 16 26 H 0.03 0.59 6.39 -51.93 -0.33 0.26 16 27 H 0.06 1.20 6.34 -51.93 -0.33 0.87 16 28 H 0.04 0.71 6.79 -51.93 -0.35 0.36 16 29 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 30 H 0.07 1.34 7.76 -51.93 -0.40 0.93 16 31 H 0.06 0.90 7.84 -51.93 -0.41 0.49 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.05 0.68 8.12 -51.93 -0.42 0.26 16 35 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.07 1.11 7.53 -51.93 -0.39 0.72 16 37 H 0.05 0.83 7.67 -51.92 -0.40 0.43 16 LS Contribution 278.17 15.07 4.19 4.19 Total: -1.00 -27.68 278.17 -7.84 -35.52 By element: Atomic # 1 Polarization: 4.87 SS G_CDS: -6.40 Total: -1.53 kcal Atomic # 6 Polarization: -16.97 SS G_CDS: -0.21 Total: -17.18 kcal Atomic # 7 Polarization: -36.99 SS G_CDS: -0.40 Total: -37.39 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -27.68 -7.84 -35.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306428321.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.000 kcal (2) G-P(sol) polarization free energy of solvation -27.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds