Wall clock time and date at job start Mon Mar 30 2020 02:54:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.47632 * 2 1 4 4 C 1.50703 * 109.47051 * 120.00046 * 2 1 3 5 5 H 1.08003 * 119.99933 * 119.99937 * 4 2 1 6 6 C 1.37871 * 120.00051 * 299.99845 * 4 2 1 7 7 N 1.31513 * 120.00024 * 0.02562 * 6 4 2 8 8 Si 1.86795 * 120.00110 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47083 * 90.00503 * 8 6 4 10 10 H 1.48503 * 109.47455 * 210.00007 * 8 6 4 11 11 H 1.48500 * 109.47399 * 330.00435 * 8 6 4 12 12 N 1.46908 * 109.47369 * 239.99843 * 2 1 3 13 13 C 1.46899 * 110.99676 * 296.09691 * 12 2 1 14 14 C 1.46894 * 111.00291 * 172.13971 * 12 2 1 15 15 H 1.09004 * 110.53745 * 59.37973 * 14 12 2 16 16 C 1.54889 * 110.48687 * 296.76952 * 14 12 2 17 17 C 1.54890 * 102.74929 * 203.37827 * 16 14 12 18 18 C 1.54267 * 104.19467 * 37.94234 * 17 16 14 19 19 H 1.08988 * 110.07222 * 95.70229 * 18 17 16 20 20 C 1.53003 * 110.02853 * 217.10744 * 18 17 16 21 21 C 1.53872 * 106.59691 * 336.38866 * 18 17 16 22 22 H 1.08996 * 109.47288 * 305.48002 * 1 2 3 23 23 H 1.09006 * 109.47047 * 65.48126 * 1 2 3 24 24 H 1.09003 * 109.47023 * 185.47139 * 1 2 3 25 25 H 0.97002 * 120.00108 * 180.02562 * 7 6 4 26 26 H 1.08992 * 109.47492 * 296.03942 * 13 12 2 27 27 H 1.08995 * 109.47589 * 56.05090 * 13 12 2 28 28 H 1.09004 * 109.46502 * 176.04064 * 13 12 2 29 29 H 1.08998 * 110.75746 * 321.69197 * 16 14 12 30 30 H 1.09001 * 110.76008 * 84.87561 * 16 14 12 31 31 H 1.08997 * 110.48429 * 279.25868 * 17 16 14 32 32 H 1.09003 * 110.48590 * 156.62193 * 17 16 14 33 33 H 1.08996 * 109.46969 * 177.16473 * 20 18 17 34 34 H 1.08995 * 109.47263 * 57.16694 * 20 18 17 35 35 H 1.09000 * 109.46910 * 297.16356 * 20 18 17 36 36 H 1.08998 * 110.03036 * 119.28656 * 21 18 17 37 37 H 1.09007 * 110.03016 * 240.71631 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 0.9428 0.8296 2.6034 8 14 2.3213 -1.1204 4.0079 9 1 3.6296 -0.5459 4.4124 10 1 1.3431 -0.9493 5.1120 11 1 2.4858 -2.5663 3.7119 12 7 2.0197 -0.6926 -1.1995 13 6 1.6264 -2.1079 -1.1875 14 6 3.4760 -0.5519 -1.3309 15 1 3.9806 -0.9672 -0.4585 16 6 3.8617 0.9358 -1.5231 17 6 5.2380 0.8438 -2.2278 18 6 5.0911 -0.3532 -3.1898 19 1 4.8192 -0.0020 -4.1851 20 6 6.4022 -1.1395 -3.2520 21 6 3.9708 -1.2405 -2.6195 22 1 -0.3634 0.5964 0.8368 23 1 -0.3633 0.4265 -0.9350 24 1 -0.3633 -1.0230 0.0980 25 1 0.7087 1.1612 3.4844 26 1 2.1034 -2.6105 -0.3462 27 1 0.5435 -2.1833 -1.0894 28 1 1.9406 -2.5800 -2.1185 29 1 3.1360 1.4442 -2.1579 30 1 3.9504 1.4395 -0.5605 31 1 6.0271 0.6540 -1.5003 32 1 5.4433 1.7580 -2.7848 33 1 6.2732 -2.0107 -3.8942 34 1 6.6784 -1.4651 -2.2492 35 1 7.1888 -0.5028 -3.6569 36 1 3.1548 -1.3193 -3.3378 37 1 4.3612 -2.2314 -2.3871 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306428321.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:35 Heat of formation + Delta-G solvation = -32.421297 kcal Electronic energy + Delta-G solvation = -14997.342202 eV Core-core repulsion = 12773.049295 eV Total energy + Delta-G solvation = -2224.292908 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.08573 -37.38866 -34.49938 -31.70326 -30.94483 -28.44514 -27.39640 -26.81671 -24.56829 -22.06095 -20.81511 -20.08827 -18.14724 -17.40092 -16.54694 -16.07080 -15.37321 -15.17251 -14.61817 -14.32944 -14.05342 -13.77177 -13.40771 -13.04851 -12.91420 -12.76970 -12.64585 -12.54086 -12.16014 -12.09348 -11.72057 -11.57683 -11.53375 -11.40782 -11.22367 -11.20460 -11.05209 -10.48377 -8.91782 -8.04787 -6.25855 1.34565 1.36289 1.45197 2.38600 3.14660 3.46226 3.76072 3.87802 4.08725 4.51584 4.58630 4.60589 4.67439 4.74154 4.80036 4.82568 4.88574 5.00857 5.05596 5.06490 5.13909 5.18873 5.19658 5.23987 5.26859 5.36275 5.41887 5.51323 5.57699 5.64282 5.74581 6.00181 6.22189 6.40243 6.72557 6.95803 7.44538 8.91823 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.033843 B = 0.009398 C = 0.008711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.146157 B = 2978.595025 C = 3213.561022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.209 3.791 3 H 0.012 0.988 4 C -0.546 4.546 5 H 0.046 0.954 6 C 0.020 3.980 7 N -0.913 5.913 8 Si 0.945 3.055 9 H -0.278 1.278 10 H -0.281 1.281 11 H -0.273 1.273 12 N -0.536 5.536 13 C 0.038 3.962 14 C 0.084 3.916 15 H 0.016 0.984 16 C -0.110 4.110 17 C -0.111 4.111 18 C -0.089 4.089 19 H 0.082 0.918 20 C -0.139 4.139 21 C -0.106 4.106 22 H 0.055 0.945 23 H 0.029 0.971 24 H 0.027 0.973 25 H 0.261 0.739 26 H 0.008 0.992 27 H 0.054 0.946 28 H 0.072 0.928 29 H 0.064 0.936 30 H 0.036 0.964 31 H 0.062 0.938 32 H 0.079 0.921 33 H 0.062 0.938 34 H 0.045 0.955 35 H 0.066 0.934 36 H 0.070 0.930 37 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.441 -2.971 -9.965 12.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.101 3.899 3 H 0.030 0.970 4 C -0.585 4.585 5 H 0.065 0.935 6 C -0.180 4.180 7 N -0.553 5.553 8 Si 0.772 3.228 9 H -0.204 1.204 10 H -0.206 1.206 11 H -0.198 1.198 12 N -0.259 5.259 13 C -0.110 4.110 14 C -0.025 4.025 15 H 0.034 0.966 16 C -0.148 4.148 17 C -0.149 4.149 18 C -0.108 4.108 19 H 0.100 0.900 20 C -0.196 4.196 21 C -0.144 4.144 22 H 0.074 0.926 23 H 0.048 0.952 24 H 0.046 0.954 25 H 0.071 0.929 26 H 0.026 0.974 27 H 0.073 0.927 28 H 0.091 0.909 29 H 0.082 0.918 30 H 0.055 0.945 31 H 0.080 0.920 32 H 0.097 0.903 33 H 0.081 0.919 34 H 0.064 0.936 35 H 0.085 0.915 36 H 0.089 0.911 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 7.130 -2.644 -10.245 12.759 hybrid contribution 0.311 -0.638 2.141 2.255 sum 7.441 -3.283 -8.104 11.482 Atomic orbital electron populations 1.21601 0.97675 0.99247 0.98990 1.19069 0.92299 0.93101 0.85381 0.97020 1.21902 1.31300 1.12482 0.92845 0.93544 1.25614 0.95232 0.95621 1.01540 1.70012 1.37428 1.23920 1.23925 0.85756 0.78182 0.79056 0.79856 1.20374 1.20639 1.19781 1.62629 1.11402 1.12431 1.39461 1.22169 1.00272 0.89335 0.99247 1.22334 0.87961 0.96105 0.96131 0.96613 1.22386 0.97579 0.95729 0.99101 1.22387 0.95656 0.98835 0.98035 1.21688 0.95163 0.94938 0.99038 0.89958 1.21851 0.96264 1.00053 1.01472 1.22262 0.98101 0.98176 0.95861 0.92609 0.95182 0.95391 0.92935 0.97365 0.92672 0.90946 0.91762 0.94548 0.91967 0.90275 0.91933 0.93591 0.91539 0.91123 0.92147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.86 8.61 71.98 0.62 -5.24 16 2 C 0.21 10.77 2.20 44.17 0.10 10.86 16 3 H 0.01 0.68 6.76 -2.39 -0.02 0.66 16 4 C -0.55 -30.26 7.12 25.60 0.18 -30.08 16 5 H 0.05 2.61 5.86 -2.91 -0.02 2.59 16 6 C 0.02 1.09 5.30 84.65 0.45 1.54 16 7 N -0.91 -53.08 11.38 21.45 0.24 -52.84 16 8 Si 0.95 44.34 29.54 68.60 2.03 46.37 16 9 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 10 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 11 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 12 N -0.54 -23.35 4.56 -869.92 -3.96 -27.31 16 13 C 0.04 1.53 8.62 127.69 1.10 2.63 16 14 C 0.08 3.28 2.34 45.99 0.11 3.39 16 15 H 0.02 0.72 7.06 -2.38 -0.02 0.70 16 16 C -0.11 -4.05 5.38 31.89 0.17 -3.88 16 17 C -0.11 -3.08 6.36 31.67 0.20 -2.88 16 18 C -0.09 -2.21 3.50 -10.07 -0.04 -2.25 16 19 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 20 C -0.14 -2.85 8.85 71.98 0.64 -2.21 16 21 C -0.11 -3.19 4.92 31.32 0.15 -3.04 16 22 H 0.06 3.06 6.24 -2.39 -0.01 3.04 16 23 H 0.03 1.36 8.14 -2.38 -0.02 1.34 16 24 H 0.03 1.34 6.69 -2.39 -0.02 1.33 16 25 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 26 H 0.01 0.34 6.39 -2.39 -0.02 0.33 16 27 H 0.05 2.21 6.34 -2.39 -0.02 2.20 16 28 H 0.07 2.41 6.79 -2.38 -0.02 2.39 16 29 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 30 H 0.04 1.52 7.76 -2.39 -0.02 1.50 16 31 H 0.06 1.71 7.84 -2.39 -0.02 1.69 16 32 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.04 1.02 8.12 -2.39 -0.02 1.00 16 35 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.07 2.10 7.53 -2.39 -0.02 2.09 16 37 H 0.06 1.73 7.67 -2.38 -0.02 1.71 16 Total: -1.00 -59.54 278.17 3.01 -56.54 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: 1.01 Total: 8.41 kcal Atomic # 6 Polarization: -34.84 SS G_CDS: 3.69 Total: -31.16 kcal Atomic # 7 Polarization: -76.44 SS G_CDS: -3.72 Total: -80.15 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Total: -59.54 3.01 -56.54 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306428321.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.115 kcal (2) G-P(sol) polarization free energy of solvation -59.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds