Wall clock time and date at job start Mon Mar 30 2020 02:52:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.46875 * 2 1 4 4 C 1.50695 * 109.47248 * 240.00147 * 2 1 3 5 5 H 1.08005 * 119.99954 * 245.37815 * 4 2 1 6 6 C 1.37876 * 120.00373 * 65.38258 * 4 2 1 7 7 N 1.31514 * 120.00026 * 185.20276 * 6 4 2 8 8 Si 1.86799 * 119.99787 * 5.19613 * 6 4 2 9 9 H 1.48500 * 109.47487 * 270.00105 * 8 6 4 10 10 H 1.48499 * 109.47276 * 30.00466 * 8 6 4 11 11 H 1.48503 * 109.47026 * 149.99993 * 8 6 4 12 12 N 1.46899 * 109.47017 * 119.99781 * 2 1 3 13 13 C 1.39782 * 111.00065 * 289.88022 * 12 2 1 14 14 C 1.54428 * 111.76816 * 189.12601 * 13 12 2 15 15 C 1.50750 * 109.03035 * 282.59068 * 14 13 12 16 16 C 1.54173 * 112.60745 * 93.01587 * 15 14 13 17 17 C 1.53819 * 111.97289 * 318.48961 * 16 15 14 18 18 H 1.08997 * 109.04906 * 79.59622 * 17 16 15 19 19 C 1.53002 * 109.04990 * 198.48791 * 17 16 15 20 20 C 1.47633 * 110.99966 * 58.77358 * 12 2 1 21 21 H 1.08997 * 109.46985 * 184.96019 * 1 2 3 22 22 H 1.08994 * 109.47337 * 304.96343 * 1 2 3 23 23 H 1.08999 * 109.46858 * 64.96411 * 1 2 3 24 24 H 0.96998 * 120.00078 * 354.98740 * 7 6 4 25 25 H 1.08995 * 109.01748 * 309.71723 * 13 12 2 26 26 H 1.08998 * 109.01592 * 68.53884 * 13 12 2 27 27 H 1.09003 * 109.54197 * 42.45632 * 14 13 12 28 28 H 1.08995 * 109.54450 * 162.72353 * 14 13 12 29 29 H 1.08999 * 108.85752 * 213.82308 * 15 14 13 30 30 H 1.09000 * 108.85187 * 332.31788 * 15 14 13 31 31 H 1.09001 * 108.97956 * 79.13449 * 16 15 14 32 32 H 1.09005 * 108.98179 * 197.85018 * 16 15 14 33 33 H 1.09004 * 109.47078 * 60.00646 * 19 17 16 34 34 H 1.09005 * 109.46716 * 179.97438 * 19 17 16 35 35 H 1.08997 * 109.47422 * 300.00023 * 19 17 16 36 36 H 1.08998 * 109.74442 * 269.98732 * 20 12 2 37 37 H 1.09000 * 109.74384 * 30.70361 * 20 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2304 5 1 2.5798 -1.6364 -1.1337 6 6 1.7933 -0.1782 -2.4797 7 7 2.1409 -0.8475 -3.5571 8 14 0.9754 1.4934 -2.6418 9 1 -0.4979 1.3195 -2.7071 10 1 1.3234 2.3309 -1.4659 11 1 1.4507 2.1588 -3.8814 12 7 2.0197 -0.6924 1.1995 13 6 1.7683 0.0603 2.3502 14 6 2.4703 -0.5364 3.5895 15 6 1.6867 -1.7309 4.0707 16 6 2.1988 -3.0560 3.4718 17 6 2.5429 -2.9179 1.9789 18 1 3.5223 -2.4495 1.8815 19 6 2.5923 -4.3104 1.3469 20 6 1.5224 -2.0816 1.2485 21 1 -0.3633 -1.0238 0.0889 22 1 -0.3634 0.5889 0.8421 23 1 -0.3633 0.4349 -0.9311 24 1 2.6303 -1.6808 -3.4735 25 1 2.1266 1.0778 2.1943 26 1 0.6934 0.0871 2.5292 27 1 3.4805 -0.8464 3.3223 28 1 2.5145 0.2131 4.3797 29 1 1.7579 -1.7846 5.1571 30 1 0.6408 -1.6014 3.7927 31 1 3.0913 -3.3687 4.0139 32 1 1.4292 -3.8190 3.5890 33 1 1.6216 -4.7939 1.4566 34 1 2.8354 -4.2204 0.2881 35 1 3.3547 -4.9089 1.8455 36 1 0.5713 -2.1137 1.7800 37 1 1.3916 -2.4619 0.2353 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306503831.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:11 Heat of formation + Delta-G solvation = -30.012216 kcal Electronic energy + Delta-G solvation = -15256.841521 eV Core-core repulsion = 13032.653079 eV Total energy + Delta-G solvation = -2224.188442 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.68872 -36.85561 -34.80609 -33.92008 -31.29105 -28.53843 -26.85565 -26.66962 -24.53168 -22.43115 -20.94121 -20.14453 -19.27810 -17.07313 -16.43682 -16.14851 -15.65549 -15.29995 -14.98417 -14.46208 -13.99263 -13.91357 -13.79870 -13.52742 -13.37152 -13.08812 -12.67810 -12.31368 -12.23935 -12.01005 -11.84432 -11.60504 -11.47751 -11.26003 -11.10114 -11.02507 -10.81645 -10.52448 -8.82648 -8.63336 -6.30440 1.41982 1.52464 1.68877 2.48677 3.12589 3.29076 3.87815 3.95779 4.09852 4.18827 4.25193 4.44802 4.49756 4.56156 4.62840 4.67825 4.71951 4.80301 4.83085 4.92544 4.93897 5.05056 5.09187 5.16826 5.20520 5.24740 5.35561 5.44194 5.47873 5.58255 5.64026 5.90842 6.09044 6.38342 6.76422 6.99460 7.47943 8.71696 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.038522 B = 0.010586 C = 0.008943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.692165 B = 2644.292367 C = 3130.121631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.184 3.816 3 H 0.032 0.968 4 C -0.568 4.568 5 H 0.026 0.974 6 C -0.030 4.030 7 N -0.950 5.950 8 Si 1.093 2.907 9 H -0.267 1.267 10 H -0.254 1.254 11 H -0.293 1.293 12 N -0.555 5.555 13 C 0.070 3.930 14 C -0.111 4.111 15 C -0.116 4.116 16 C -0.104 4.104 17 C -0.087 4.087 18 H 0.058 0.942 19 C -0.139 4.139 20 C 0.087 3.913 21 H 0.044 0.956 22 H 0.054 0.946 23 H 0.043 0.957 24 H 0.249 0.751 25 H 0.057 0.943 26 H 0.013 0.987 27 H 0.061 0.939 28 H 0.083 0.917 29 H 0.079 0.921 30 H 0.048 0.952 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.059 0.941 34 H 0.028 0.972 35 H 0.069 0.931 36 H 0.031 0.969 37 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.344 -0.786 15.711 15.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.076 3.924 3 H 0.050 0.950 4 C -0.606 4.606 5 H 0.044 0.956 6 C -0.226 4.226 7 N -0.588 5.588 8 Si 0.916 3.084 9 H -0.192 1.192 10 H -0.178 1.178 11 H -0.220 1.220 12 N -0.278 5.278 13 C -0.059 4.059 14 C -0.149 4.149 15 C -0.154 4.154 16 C -0.142 4.142 17 C -0.106 4.106 18 H 0.076 0.924 19 C -0.197 4.197 20 C -0.040 4.040 21 H 0.063 0.937 22 H 0.072 0.928 23 H 0.061 0.939 24 H 0.058 0.942 25 H 0.076 0.924 26 H 0.031 0.969 27 H 0.079 0.921 28 H 0.102 0.898 29 H 0.097 0.903 30 H 0.067 0.933 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.048 0.952 35 H 0.088 0.912 36 H 0.050 0.950 37 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -2.452 0.258 14.628 14.835 hybrid contribution 0.013 -1.380 0.402 1.438 sum -2.439 -1.122 15.031 15.268 Atomic orbital electron populations 1.22612 0.99920 1.00669 1.00123 1.19641 0.90012 0.94277 0.88507 0.95042 1.22239 1.37111 1.08787 0.92473 0.95601 1.27093 0.97280 1.06341 0.91915 1.70940 1.39482 1.17009 1.31390 0.83408 0.76392 0.72223 0.76361 1.19243 1.17838 1.22043 1.58873 1.63261 1.02842 1.02822 1.21055 0.97107 0.96894 0.90894 1.21460 0.99583 0.97857 0.95974 1.21390 0.99182 0.94171 1.00634 1.21929 1.01347 0.97400 0.93487 1.20976 0.99159 0.95128 0.95381 0.92360 1.21828 1.02058 0.96430 0.99395 1.21636 0.95328 0.88070 0.98959 0.93728 0.92756 0.93855 0.94160 0.92432 0.96911 0.92058 0.89832 0.90258 0.93343 0.91197 0.91594 0.92230 0.95239 0.91195 0.95039 0.93331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -7.43 8.29 71.98 0.60 -6.84 16 2 C 0.18 8.73 1.85 44.17 0.08 8.81 16 3 H 0.03 1.54 6.33 -2.39 -0.02 1.52 16 4 C -0.57 -32.58 8.03 25.60 0.21 -32.38 16 5 H 0.03 1.65 7.16 -2.91 -0.02 1.63 16 6 C -0.03 -1.77 5.43 84.65 0.46 -1.31 16 7 N -0.95 -60.83 13.70 21.45 0.29 -60.53 16 8 Si 1.09 51.47 25.32 68.60 1.74 53.21 16 9 H -0.27 -11.65 6.77 99.48 0.67 -10.98 16 10 H -0.25 -10.77 6.36 99.48 0.63 -10.14 16 11 H -0.29 -13.89 7.11 99.48 0.71 -13.19 16 12 N -0.56 -23.05 3.89 -892.30 -3.47 -26.52 16 13 C 0.07 2.37 4.61 88.07 0.41 2.77 16 14 C -0.11 -2.95 5.65 30.35 0.17 -2.78 16 15 C -0.12 -2.75 5.32 30.26 0.16 -2.59 16 16 C -0.10 -2.57 5.30 31.27 0.17 -2.40 16 17 C -0.09 -2.84 2.28 -11.23 -0.03 -2.86 16 18 H 0.06 2.14 7.26 -2.39 -0.02 2.12 16 19 C -0.14 -4.21 8.84 71.98 0.64 -3.57 16 20 C 0.09 3.39 3.20 85.45 0.27 3.66 16 21 H 0.04 1.90 6.79 -2.39 -0.02 1.89 16 22 H 0.05 1.98 7.07 -2.39 -0.02 1.96 16 23 H 0.04 1.89 4.36 -2.39 -0.01 1.88 16 24 H 0.25 16.26 8.72 -92.71 -0.81 15.45 16 25 H 0.06 1.95 7.80 -2.39 -0.02 1.93 16 26 H 0.01 0.43 6.36 -2.39 -0.02 0.41 16 27 H 0.06 1.78 7.11 -2.39 -0.02 1.77 16 28 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.05 1.23 6.57 -2.39 -0.02 1.21 16 31 H 0.07 1.51 8.14 -2.39 -0.02 1.50 16 32 H 0.07 1.48 7.96 -2.38 -0.02 1.46 16 33 H 0.06 1.63 8.12 -2.39 -0.02 1.61 16 34 H 0.03 1.03 8.05 -2.38 -0.02 1.01 16 35 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.03 1.15 6.45 -2.39 -0.02 1.13 16 37 H 0.05 2.27 5.63 -2.39 -0.01 2.26 16 Total: -1.00 -64.48 266.21 2.57 -61.91 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: 0.88 Total: 11.41 kcal Atomic # 6 Polarization: -42.61 SS G_CDS: 3.13 Total: -39.48 kcal Atomic # 7 Polarization: -83.87 SS G_CDS: -3.18 Total: -87.05 kcal Atomic # 14 Polarization: 51.47 SS G_CDS: 1.74 Total: 53.21 kcal Total: -64.48 2.57 -61.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306503831.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.901 kcal (2) G-P(sol) polarization free energy of solvation -64.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds