Wall clock time and date at job start Mon Mar 30 2020 02:52:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.47093 * 2 1 4 4 C 1.50695 * 109.47032 * 119.99942 * 2 1 3 5 5 H 1.07995 * 120.00072 * 94.23198 * 4 2 1 6 6 C 1.37873 * 120.00114 * 274.23437 * 4 2 1 7 7 N 1.31515 * 120.00377 * 356.41470 * 6 4 2 8 8 Si 1.86801 * 120.00171 * 176.14114 * 6 4 2 9 9 H 1.48502 * 109.47025 * 359.97438 * 8 6 4 10 10 H 1.48496 * 109.47299 * 119.99845 * 8 6 4 11 11 H 1.48501 * 109.47403 * 239.99937 * 8 6 4 12 12 N 1.46902 * 109.47144 * 240.00124 * 2 1 3 13 13 C 1.47637 * 110.99793 * 188.89135 * 12 2 1 14 14 C 1.50812 * 108.04976 * 150.34764 * 13 12 2 15 15 C 1.53820 * 111.62348 * 95.05584 * 14 13 12 16 16 C 1.54166 * 111.97140 * 319.04344 * 15 14 13 17 17 C 1.50754 * 112.60584 * 318.48547 * 16 15 14 18 18 H 1.09001 * 109.55043 * 333.15429 * 17 16 15 19 19 C 1.53003 * 109.62104 * 212.92495 * 17 16 15 20 20 C 1.39776 * 110.99924 * 59.99916 * 12 2 1 21 21 H 1.08992 * 109.47363 * 172.89094 * 1 2 3 22 22 H 1.09000 * 109.47099 * 292.89573 * 1 2 3 23 23 H 1.09006 * 109.46828 * 52.89435 * 1 2 3 24 24 H 0.97004 * 119.99662 * 5.10233 * 7 6 4 25 25 H 1.09004 * 109.74238 * 269.98611 * 13 12 2 26 26 H 1.09001 * 109.74305 * 30.70802 * 13 12 2 27 27 H 1.08999 * 109.05270 * 334.50420 * 14 13 12 28 28 H 1.09001 * 109.05030 * 215.60952 * 14 13 12 29 29 H 1.09001 * 108.98376 * 198.39961 * 15 14 13 30 30 H 1.09008 * 108.97905 * 79.68529 * 15 14 13 31 31 H 1.09000 * 108.85548 * 197.68250 * 16 15 14 32 32 H 1.08997 * 108.85629 * 79.29445 * 16 15 14 33 33 H 1.09004 * 109.47366 * 300.41381 * 19 17 16 34 34 H 1.09002 * 109.47123 * 60.40886 * 19 17 16 35 35 H 1.08997 * 109.47329 * 180.41157 * 19 17 16 36 36 H 1.08993 * 109.02298 * 309.71640 * 20 12 2 37 37 H 1.09005 * 109.02105 * 68.61449 * 20 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.2774 -1.7612 1.1851 6 6 2.1790 -0.0188 2.4141 7 7 1.9482 1.2753 2.4526 8 14 2.6981 -0.9214 3.9651 9 1 2.8877 -2.3622 3.6593 10 1 3.9731 -0.3495 4.4673 11 1 1.6455 -0.7702 5.0016 12 7 2.0197 -0.6925 -1.1995 13 6 3.4799 -0.8994 -1.1318 14 6 3.8106 -2.1523 -1.9034 15 6 4.2214 -1.8345 -3.3512 16 6 3.3403 -0.7324 -3.9721 17 6 1.8821 -0.8918 -3.6245 18 1 1.6661 -1.9424 -3.4304 19 6 1.0196 -0.3984 -4.7881 20 6 1.5715 -0.0586 -2.3618 21 1 -0.3633 -1.0197 -0.1272 22 1 -0.3633 0.3998 0.9467 23 1 -0.3633 0.6200 -0.8196 24 1 1.6040 1.7301 1.6680 25 1 3.9936 -0.0468 -1.5762 26 1 3.7877 -1.0148 -0.0925 27 1 2.9365 -2.8033 -1.9163 28 1 4.6309 -2.6702 -1.4063 29 1 4.1326 -2.7398 -3.9518 30 1 5.2605 -1.5052 -3.3607 31 1 3.4494 -0.7632 -5.0562 32 1 3.6841 0.2376 -3.6130 33 1 1.2388 0.6514 -4.9833 34 1 1.2397 -0.9871 -5.6786 35 1 -0.0340 -0.5079 -4.5313 36 1 0.4943 0.0919 -2.2916 37 1 2.0607 0.9116 -2.4486 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306503833.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:17 Heat of formation + Delta-G solvation = -16.818783 kcal Electronic energy + Delta-G solvation = -15137.542422 eV Core-core repulsion = 12913.926090 eV Total energy + Delta-G solvation = -2223.616332 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.04235 -35.26308 -32.88486 -32.44419 -29.11125 -27.35527 -25.56789 -23.78252 -23.57901 -20.63231 -19.65663 -18.79360 -16.57835 -15.49653 -14.78767 -14.47617 -14.16798 -13.74281 -13.49673 -13.01356 -12.69696 -12.28616 -12.04331 -11.48346 -11.38867 -11.19347 -11.02045 -10.92124 -10.75520 -10.50201 -10.19518 -10.11693 -10.08779 -9.84253 -9.67878 -9.55256 -8.43752 -8.36667 -7.06724 -6.32018 -4.03414 3.44797 3.47856 3.62150 4.52368 4.84557 5.10733 5.22156 5.25962 5.41115 5.51230 5.62768 5.73929 5.90933 5.96448 6.01740 6.12793 6.18767 6.28242 6.29791 6.39424 6.43118 6.54504 6.58492 6.68843 6.76470 6.76879 6.85495 6.98703 7.07623 7.23062 7.53554 8.06841 8.17610 8.57662 8.72100 8.95737 9.68124 11.03869 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.040613 B = 0.009459 C = 0.008202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.263711 B = 2959.363475 C = 3413.042734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.197 3.803 3 H 0.001 0.999 4 C -0.579 4.579 5 H 0.058 0.942 6 C 0.017 3.983 7 N -0.916 5.916 8 Si 1.073 2.927 9 H -0.288 1.288 10 H -0.288 1.288 11 H -0.288 1.288 12 N -0.550 5.550 13 C 0.071 3.929 14 C -0.115 4.115 15 C -0.115 4.115 16 C -0.112 4.112 17 C -0.093 4.093 18 H 0.077 0.923 19 C -0.141 4.141 20 C 0.082 3.918 21 H 0.045 0.955 22 H 0.048 0.952 23 H 0.016 0.984 24 H 0.269 0.731 25 H 0.018 0.982 26 H 0.097 0.903 27 H 0.070 0.930 28 H 0.052 0.948 29 H 0.051 0.949 30 H 0.051 0.949 31 H 0.051 0.949 32 H 0.054 0.946 33 H 0.049 0.951 34 H 0.049 0.951 35 H 0.053 0.947 36 H 0.065 0.935 37 H 0.001 0.999 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.476 -4.141 -10.706 11.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.091 3.909 3 H 0.018 0.982 4 C -0.618 4.618 5 H 0.076 0.924 6 C -0.187 4.187 7 N -0.552 5.552 8 Si 0.901 3.099 9 H -0.214 1.214 10 H -0.215 1.215 11 H -0.215 1.215 12 N -0.274 5.274 13 C -0.056 4.056 14 C -0.153 4.153 15 C -0.152 4.152 16 C -0.149 4.149 17 C -0.112 4.112 18 H 0.096 0.904 19 C -0.199 4.199 20 C -0.048 4.048 21 H 0.064 0.936 22 H 0.067 0.933 23 H 0.035 0.965 24 H 0.080 0.920 25 H 0.036 0.964 26 H 0.115 0.885 27 H 0.089 0.911 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.072 0.928 36 H 0.084 0.916 37 H 0.018 0.982 Dipole moment (debyes) X Y Z Total from point charges 1.680 -4.340 -9.125 10.243 hybrid contribution -0.121 0.642 -1.692 1.814 sum 1.558 -3.698 -10.818 11.538 Atomic orbital electron populations 1.21936 0.98763 0.99511 0.98634 1.19409 0.91255 0.92589 0.87620 0.98182 1.21908 1.47414 0.97962 0.94518 0.92380 1.25815 0.95253 0.96023 1.01633 1.70735 1.42309 1.08589 1.33606 0.83493 0.76614 0.74670 0.75077 1.21406 1.21490 1.21451 1.58851 1.11992 1.54179 1.02341 1.21698 0.87365 0.94834 1.01688 1.21443 1.00892 0.99175 0.93768 1.21914 0.98480 0.97940 0.96911 1.21443 0.95190 0.99152 0.99146 1.21073 0.94313 1.01139 0.94641 0.90437 1.21821 0.99745 1.00696 0.97635 1.20974 0.99939 0.93609 0.90299 0.93572 0.93277 0.96466 0.91956 0.96355 0.88516 0.91131 0.92925 0.93045 0.93040 0.93051 0.92739 0.93195 0.93142 0.92823 0.91640 0.98160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.05 8.69 37.16 0.32 -2.72 16 2 C 0.20 4.97 1.84 -68.86 -0.13 4.84 16 3 H 0.00 0.02 6.67 -51.93 -0.35 -0.33 16 4 C -0.58 -15.89 6.52 -34.44 -0.22 -16.12 16 5 H 0.06 1.63 7.60 -52.49 -0.40 1.23 16 6 C 0.02 0.47 5.46 -17.82 -0.10 0.37 16 7 N -0.92 -27.39 13.62 55.43 0.75 -26.63 16 8 Si 1.07 25.14 29.91 -169.99 -5.08 20.06 16 9 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 10 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 11 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 12 N -0.55 -12.00 3.85 -233.38 -0.90 -12.90 16 13 C 0.07 1.47 5.13 -4.52 -0.02 1.45 16 14 C -0.11 -1.96 5.41 -27.40 -0.15 -2.11 16 15 C -0.11 -1.66 5.91 -25.69 -0.15 -1.81 16 16 C -0.11 -1.64 4.88 -27.25 -0.13 -1.77 16 17 C -0.09 -1.45 2.44 -90.99 -0.22 -1.67 16 18 H 0.08 1.28 7.11 -51.93 -0.37 0.91 16 19 C -0.14 -1.83 8.90 37.16 0.33 -1.50 16 20 C 0.08 1.57 4.18 -6.74 -0.03 1.54 16 21 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 22 H 0.05 1.21 8.13 -51.93 -0.42 0.79 16 23 H 0.02 0.35 6.60 -51.93 -0.34 0.01 16 24 H 0.27 8.08 6.66 -40.82 -0.27 7.81 16 25 H 0.02 0.38 6.66 -51.93 -0.35 0.03 16 26 H 0.10 2.27 5.97 -51.93 -0.31 1.96 16 27 H 0.07 1.28 7.26 -51.93 -0.38 0.90 16 28 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.05 0.70 8.14 -51.92 -0.42 0.28 16 31 H 0.05 0.66 7.69 -51.93 -0.40 0.26 16 32 H 0.05 0.87 6.57 -51.93 -0.34 0.52 16 33 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.05 0.57 8.10 -51.93 -0.42 0.15 16 35 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.07 1.26 5.66 -51.93 -0.29 0.96 16 37 H 0.00 0.01 7.54 -51.93 -0.39 -0.38 16 LS Contribution 275.12 15.07 4.15 4.15 Total: -1.00 -28.60 275.12 -7.94 -36.55 By element: Atomic # 1 Polarization: 4.64 SS G_CDS: -6.36 Total: -1.72 kcal Atomic # 6 Polarization: -19.00 SS G_CDS: -0.50 Total: -19.50 kcal Atomic # 7 Polarization: -39.39 SS G_CDS: -0.14 Total: -39.53 kcal Atomic # 14 Polarization: 25.14 SS G_CDS: -5.08 Total: 20.06 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -28.60 -7.94 -36.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306503833.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.728 kcal (2) G-P(sol) polarization free energy of solvation -28.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds