Wall clock time and date at job start Mon Mar 30 2020 02:52:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.47093 * 2 1 4 4 C 1.50695 * 109.47032 * 119.99942 * 2 1 3 5 5 H 1.07995 * 120.00072 * 94.23198 * 4 2 1 6 6 C 1.37873 * 120.00114 * 274.23437 * 4 2 1 7 7 N 1.31515 * 120.00377 * 356.41470 * 6 4 2 8 8 Si 1.86801 * 120.00171 * 176.14114 * 6 4 2 9 9 H 1.48502 * 109.47025 * 359.97438 * 8 6 4 10 10 H 1.48496 * 109.47299 * 119.99845 * 8 6 4 11 11 H 1.48501 * 109.47403 * 239.99937 * 8 6 4 12 12 N 1.46902 * 109.47144 * 240.00124 * 2 1 3 13 13 C 1.47637 * 110.99793 * 188.89135 * 12 2 1 14 14 C 1.50812 * 108.04976 * 150.34764 * 13 12 2 15 15 C 1.53820 * 111.62348 * 95.05584 * 14 13 12 16 16 C 1.54166 * 111.97140 * 319.04344 * 15 14 13 17 17 C 1.50754 * 112.60584 * 318.48547 * 16 15 14 18 18 H 1.09001 * 109.55043 * 333.15429 * 17 16 15 19 19 C 1.53003 * 109.62104 * 212.92495 * 17 16 15 20 20 C 1.39776 * 110.99924 * 59.99916 * 12 2 1 21 21 H 1.08992 * 109.47363 * 172.89094 * 1 2 3 22 22 H 1.09000 * 109.47099 * 292.89573 * 1 2 3 23 23 H 1.09006 * 109.46828 * 52.89435 * 1 2 3 24 24 H 0.97004 * 119.99662 * 5.10233 * 7 6 4 25 25 H 1.09004 * 109.74238 * 269.98611 * 13 12 2 26 26 H 1.09001 * 109.74305 * 30.70802 * 13 12 2 27 27 H 1.08999 * 109.05270 * 334.50420 * 14 13 12 28 28 H 1.09001 * 109.05030 * 215.60952 * 14 13 12 29 29 H 1.09001 * 108.98376 * 198.39961 * 15 14 13 30 30 H 1.09008 * 108.97905 * 79.68529 * 15 14 13 31 31 H 1.09000 * 108.85548 * 197.68250 * 16 15 14 32 32 H 1.08997 * 108.85629 * 79.29445 * 16 15 14 33 33 H 1.09004 * 109.47366 * 300.41381 * 19 17 16 34 34 H 1.09002 * 109.47123 * 60.40886 * 19 17 16 35 35 H 1.08997 * 109.47329 * 180.41157 * 19 17 16 36 36 H 1.08993 * 109.02298 * 309.71640 * 20 12 2 37 37 H 1.09005 * 109.02105 * 68.61449 * 20 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.2774 -1.7612 1.1851 6 6 2.1790 -0.0188 2.4141 7 7 1.9482 1.2753 2.4526 8 14 2.6981 -0.9214 3.9651 9 1 2.8877 -2.3622 3.6593 10 1 3.9731 -0.3495 4.4673 11 1 1.6455 -0.7702 5.0016 12 7 2.0197 -0.6925 -1.1995 13 6 3.4799 -0.8994 -1.1318 14 6 3.8106 -2.1523 -1.9034 15 6 4.2214 -1.8345 -3.3512 16 6 3.3403 -0.7324 -3.9721 17 6 1.8821 -0.8918 -3.6245 18 1 1.6661 -1.9424 -3.4304 19 6 1.0196 -0.3984 -4.7881 20 6 1.5715 -0.0586 -2.3618 21 1 -0.3633 -1.0197 -0.1272 22 1 -0.3633 0.3998 0.9467 23 1 -0.3633 0.6200 -0.8196 24 1 1.6040 1.7301 1.6680 25 1 3.9936 -0.0468 -1.5762 26 1 3.7877 -1.0148 -0.0925 27 1 2.9365 -2.8033 -1.9163 28 1 4.6309 -2.6702 -1.4063 29 1 4.1326 -2.7398 -3.9518 30 1 5.2605 -1.5052 -3.3607 31 1 3.4494 -0.7632 -5.0562 32 1 3.6841 0.2376 -3.6130 33 1 1.2388 0.6514 -4.9833 34 1 1.2397 -0.9871 -5.6786 35 1 -0.0340 -0.5079 -4.5313 36 1 0.4943 0.0919 -2.2916 37 1 2.0607 0.9116 -2.4486 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306503833.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:16 Heat of formation + Delta-G solvation = -33.474246 kcal Electronic energy + Delta-G solvation = -15138.264657 eV Core-core repulsion = 12913.926090 eV Total energy + Delta-G solvation = -2224.338567 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.61104 -36.95023 -34.39683 -34.23667 -30.96296 -28.71535 -27.36126 -25.62644 -24.98283 -22.35436 -21.34127 -20.12435 -18.63400 -17.25742 -16.32638 -15.94005 -15.69726 -15.54628 -15.00766 -14.69633 -14.04666 -13.64689 -13.48218 -13.24702 -13.17689 -12.90255 -12.68224 -12.53907 -12.34683 -12.03354 -11.94558 -11.90174 -11.37925 -11.32330 -11.12906 -11.02305 -10.54870 -10.47976 -8.92184 -8.55553 -6.29251 1.53253 1.61605 1.78628 2.56520 3.13529 3.31924 3.84378 3.92450 4.02460 4.25031 4.29968 4.42824 4.51925 4.60182 4.68726 4.72967 4.74489 4.80247 4.84974 4.92716 4.97622 5.05894 5.12043 5.14051 5.20175 5.32687 5.37549 5.46061 5.50995 5.60551 5.60948 6.01177 6.08851 6.55225 6.57868 7.01496 7.50123 8.77924 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.040613 B = 0.009459 C = 0.008202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.263711 B = 2959.363475 C = 3413.042734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.195 3.805 3 H -0.037 1.037 4 C -0.579 4.579 5 H 0.050 0.950 6 C -0.033 4.033 7 N -0.942 5.942 8 Si 1.118 2.882 9 H -0.271 1.271 10 H -0.282 1.282 11 H -0.281 1.281 12 N -0.548 5.548 13 C 0.073 3.927 14 C -0.108 4.108 15 C -0.110 4.110 16 C -0.112 4.112 17 C -0.084 4.084 18 H 0.073 0.927 19 C -0.137 4.137 20 C 0.078 3.922 21 H 0.051 0.949 22 H 0.027 0.973 23 H 0.038 0.962 24 H 0.255 0.745 25 H 0.013 0.987 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.075 0.925 30 H 0.062 0.938 31 H 0.080 0.920 32 H 0.036 0.964 33 H 0.051 0.949 34 H 0.074 0.926 35 H 0.054 0.946 36 H 0.063 0.937 37 H -0.015 1.015 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.810 -5.685 -12.298 13.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.088 3.912 3 H -0.019 1.019 4 C -0.618 4.618 5 H 0.069 0.931 6 C -0.231 4.231 7 N -0.580 5.580 8 Si 0.941 3.059 9 H -0.195 1.195 10 H -0.208 1.208 11 H -0.207 1.207 12 N -0.272 5.272 13 C -0.054 4.054 14 C -0.146 4.146 15 C -0.148 4.148 16 C -0.149 4.149 17 C -0.103 4.103 18 H 0.092 0.908 19 C -0.194 4.194 20 C -0.052 4.052 21 H 0.070 0.930 22 H 0.047 0.953 23 H 0.057 0.943 24 H 0.065 0.935 25 H 0.032 0.968 26 H 0.081 0.919 27 H 0.080 0.920 28 H 0.082 0.918 29 H 0.094 0.906 30 H 0.081 0.919 31 H 0.098 0.902 32 H 0.055 0.945 33 H 0.070 0.930 34 H 0.093 0.907 35 H 0.073 0.927 36 H 0.081 0.919 37 H 0.003 0.997 Dipole moment (debyes) X Y Z Total from point charges 2.013 -5.894 -10.751 12.425 hybrid contribution -0.224 1.143 -1.254 1.711 sum 1.789 -4.751 -12.005 13.034 Atomic orbital electron populations 1.21742 0.97314 1.00098 0.98384 1.19326 0.92387 0.90652 0.88815 1.01922 1.22105 1.46637 0.97550 0.95477 0.93134 1.27203 0.94976 0.95979 1.04945 1.70861 1.44393 1.09657 1.33075 0.82912 0.76625 0.74513 0.71888 1.19545 1.20807 1.20724 1.58932 1.12638 1.53541 1.02087 1.21669 0.86690 0.96696 1.00312 1.21347 1.00969 0.96795 0.95491 1.21887 0.98937 0.99016 0.94918 1.21453 0.94290 0.98268 1.00926 1.21011 0.95727 1.00032 0.93542 0.90819 1.21791 0.99205 1.01188 0.97232 1.21123 0.99447 0.93636 0.91004 0.92964 0.95346 0.94283 0.93473 0.96835 0.91913 0.91957 0.91801 0.90593 0.91932 0.90151 0.94535 0.92958 0.90678 0.92691 0.91904 0.99720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.56 8.69 71.98 0.63 -4.93 16 2 C 0.20 10.13 1.84 44.17 0.08 10.21 16 3 H -0.04 -2.16 6.67 -2.39 -0.02 -2.18 16 4 C -0.58 -32.50 6.52 25.60 0.17 -32.33 16 5 H 0.05 2.87 7.60 -2.91 -0.02 2.84 16 6 C -0.03 -1.92 5.46 84.65 0.46 -1.45 16 7 N -0.94 -58.01 13.62 21.45 0.29 -57.72 16 8 Si 1.12 50.82 29.91 68.60 2.05 52.87 16 9 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 10 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 11 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 12 N -0.55 -24.17 3.85 -892.28 -3.43 -27.60 16 13 C 0.07 3.07 5.13 85.45 0.44 3.51 16 14 C -0.11 -3.54 5.41 30.16 0.16 -3.38 16 15 C -0.11 -2.85 5.91 31.27 0.18 -2.66 16 16 C -0.11 -2.97 4.88 30.26 0.15 -2.82 16 17 C -0.08 -2.44 2.44 -11.03 -0.03 -2.47 16 18 H 0.07 2.23 7.11 -2.39 -0.02 2.21 16 19 C -0.14 -3.11 8.90 71.98 0.64 -2.47 16 20 C 0.08 2.95 4.18 88.07 0.37 3.32 16 21 H 0.05 2.37 8.14 -2.39 -0.02 2.35 16 22 H 0.03 1.42 8.13 -2.39 -0.02 1.40 16 23 H 0.04 1.64 6.60 -2.38 -0.02 1.62 16 24 H 0.26 16.03 6.66 -92.71 -0.62 15.42 16 25 H 0.01 0.57 6.66 -2.39 -0.02 0.55 16 26 H 0.06 3.03 5.97 -2.39 -0.01 3.02 16 27 H 0.06 2.15 7.26 -2.39 -0.02 2.13 16 28 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 29 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.06 1.50 8.14 -2.38 -0.02 1.48 16 31 H 0.08 1.71 7.69 -2.39 -0.02 1.69 16 32 H 0.04 1.10 6.57 -2.39 -0.02 1.08 16 33 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.07 1.38 8.10 -2.39 -0.02 1.36 16 35 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.06 2.38 5.66 -2.39 -0.01 2.37 16 37 H -0.02 -0.62 7.54 -2.38 -0.02 -0.64 16 Total: -1.00 -62.83 275.12 3.33 -59.50 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: 1.16 Total: 8.43 kcal Atomic # 6 Polarization: -38.73 SS G_CDS: 3.25 Total: -35.48 kcal Atomic # 7 Polarization: -82.19 SS G_CDS: -3.14 Total: -85.33 kcal Atomic # 14 Polarization: 50.82 SS G_CDS: 2.05 Total: 52.87 kcal Total: -62.83 3.33 -59.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306503833.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.029 kcal (2) G-P(sol) polarization free energy of solvation -62.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds